Strain Fitness in Pantoea sp. MT58 around IAI47_07625

Experiment: Ying_all64 rep B; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep B; time point 2
1,613,900	+		IAI47_07620	0.26	-1.3
1,613,900	+		IAI47_07620	0.26	-1.0
1,613,900	+		IAI47_07620	0.26	-0.4
1,613,918	+		IAI47_07620	0.27	-2.1
1,613,925	+		IAI47_07620	0.28	+0.3
1,613,926	-		IAI47_07620	0.28	+2.3
1,613,926	-		IAI47_07620	0.28	+0.5
1,613,932	+		IAI47_07620	0.28	+0.4
1,613,932	+		IAI47_07620	0.28	+2.0
1,613,933	-		IAI47_07620	0.28	+1.1
1,613,933	-		IAI47_07620	0.28	-0.0
1,614,185	+		IAI47_07620	0.47	+0.4
1,614,185	+		IAI47_07620	0.47	-1.0
1,614,186	-		IAI47_07620	0.47	-0.6
1,614,258	-		IAI47_07620	0.53	+1.0
1,614,275	+		IAI47_07620	0.54	+0.5
1,614,285	-		IAI47_07620	0.55	-0.2
1,614,312	+		IAI47_07620	0.57	+1.5
1,614,313	-		IAI47_07620	0.57	+0.4
1,614,354	+		IAI47_07620	0.60	+0.7
1,614,354	+		IAI47_07620	0.60	+0.4
1,614,354	+		IAI47_07620	0.60	+0.2
1,614,354	+		IAI47_07620	0.60	+0.3
1,614,355	-		IAI47_07620	0.60	-0.8
1,614,411	+		IAI47_07620	0.64	+1.0
1,614,412	-		IAI47_07620	0.64	+0.6
1,614,412	-		IAI47_07620	0.64	+0.4
1,614,427	-		IAI47_07620	0.65	+2.8
1,614,427	-		IAI47_07620	0.65	+0.1
1,614,427	-		IAI47_07620	0.65	-0.0
1,614,437	+		IAI47_07620	0.66	-1.5
1,614,438	-		IAI47_07620	0.66	+1.9
1,614,438	-		IAI47_07620	0.66	+0.3
1,614,438	-		IAI47_07620	0.66	+0.3
1,614,672	-		IAI47_07620	0.84	+1.5
1,614,699	-		IAI47_07620	0.86	+0.4
1,614,738	+		IAI47_07620	0.89	-0.1
1,614,739	-		IAI47_07620	0.89	+0.4
1,614,739	-		IAI47_07620	0.89	-0.0
1,614,838	-				-0.4
1,614,838	-				-0.1
1,614,885	+				+0.7
1,614,885	+				+1.7
1,614,885	+				+2.0
1,614,885	+				-0.0
1,614,885	+				+0.1
1,614,885	+				+0.3
1,614,885	+				-1.3
1,614,885	+				-0.0
1,614,886	-				-0.8
1,614,886	-				+1.5
1,614,886	-				-0.3
1,614,886	-				-0.8
1,614,886	-				+0.7
1,614,886	-				+0.2
1,614,886	-				-0.4
1,614,886	-				-0.8
1,614,886	-				-0.0
1,614,886	-				-0.4
1,614,886	-				-1.0
1,614,886	-				+0.1
1,614,886	-				-0.5
1,614,886	-				+1.8
1,614,897	+				-1.0
1,614,897	+				-0.0
1,614,898	-				+0.6
1,614,912	+				-0.2
1,614,913	-				+1.2
1,614,913	-				+0.1
1,614,913	-				+1.1
1,614,913	-				-0.5
1,615,181	+		IAI47_07625	0.33	-1.3
1,615,181	+		IAI47_07625	0.33	-0.0
1,615,223	+		IAI47_07625	0.38	+0.1
1,615,223	+		IAI47_07625	0.38	+0.7
1,615,223	+		IAI47_07625	0.38	-0.7
1,615,224	-		IAI47_07625	0.39	+2.2
1,615,224	-		IAI47_07625	0.39	+1.8
1,615,384	+		IAI47_07625	0.58	-0.1
1,615,384	+		IAI47_07625	0.58	-0.3
1,615,384	+		IAI47_07625	0.58	-0.1
1,615,385	-		IAI47_07625	0.58	-0.0
1,615,385	-		IAI47_07625	0.58	+1.5
1,615,385	-		IAI47_07625	0.58	-0.2
1,615,385	-		IAI47_07625	0.58	+0.4
1,615,402	+		IAI47_07625	0.60	-0.5
1,615,402	+		IAI47_07625	0.60	+1.3
1,615,413	+		IAI47_07625	0.61	+0.9
1,615,413	+		IAI47_07625	0.61	-0.9
1,615,414	-		IAI47_07625	0.61	+0.3
1,615,414	-		IAI47_07625	0.61	-0.3
1,615,643	-		IAI47_07625	0.88	+2.0
1,615,702	+				+0.4
1,615,703	-				-0.5
1,615,746	+				-0.0
1,615,746	+				+1.6
1,615,746	+				+0.6
1,615,747	-				-0.0
1,615,753	+				-0.0
1,615,755	+				+1.7
1,615,755	+				+1.3
1,615,755	+				+0.6
1,615,756	-				+1.0
1,615,827	+				+0.4
1,615,827	+				-0.0
1,615,827	+				+1.1
1,615,827	+				+1.0
1,615,827	+				+0.2
1,615,827	+				+1.7
1,615,827	+				+0.3
1,615,828	-				-0.5
1,615,828	-				+1.6
1,615,828	-				-0.5
1,615,828	-				+1.1
1,615,828	-				-0.4
1,615,828	-				-0.8
1,615,828	-				-1.2
1,615,988	+		IAI47_07630	0.27	+0.2
1,616,032	+		IAI47_07630	0.31	-0.2
1,616,032	+		IAI47_07630	0.31	-0.1
1,616,032	+		IAI47_07630	0.31	+1.7
1,616,032	+		IAI47_07630	0.31	-0.3
1,616,032	+		IAI47_07630	0.31	+0.1
1,616,032	+		IAI47_07630	0.31	+0.7
1,616,032	+		IAI47_07630	0.31	+1.0
1,616,032	+		IAI47_07630	0.31	-1.0
1,616,033	-		IAI47_07630	0.31	+1.2
1,616,033	-		IAI47_07630	0.31	+0.1
1,616,033	-		IAI47_07630	0.31	-0.0
1,616,033	-		IAI47_07630	0.31	-0.5
1,616,033	-		IAI47_07630	0.31	-0.2
1,616,033	-		IAI47_07630	0.31	-0.6
1,616,033	-		IAI47_07630	0.31	-0.6
1,616,067	+		IAI47_07630	0.35	+0.8
1,616,067	+		IAI47_07630	0.35	+1.0
1,616,067	+		IAI47_07630	0.35	+1.4
1,616,067	+		IAI47_07630	0.35	+2.4
1,616,068	-		IAI47_07630	0.35	-0.3
1,616,068	-		IAI47_07630	0.35	-0.7
1,616,068	-		IAI47_07630	0.35	+1.5
1,616,068	-		IAI47_07630	0.35	+1.4
1,616,077	+		IAI47_07630	0.36	+1.0
1,616,077	+		IAI47_07630	0.36	+0.5
1,616,078	-		IAI47_07630	0.36	-0.1
1,616,124	-		IAI47_07630	0.41	+1.5
1,616,252	+		IAI47_07630	0.55	-1.7
1,616,252	+		IAI47_07630	0.55	+1.0
1,616,252	+		IAI47_07630	0.55	+1.0
1,616,253	-		IAI47_07630	0.55	+0.8
1,616,375	+		IAI47_07630	0.68	-1.2
1,616,662	+				+1.8
1,616,665	+				+0.2
1,616,665	+				+0.2
1,616,665	+				-0.0
1,616,665	+				-0.5
1,616,665	+				-0.3
1,616,665	+				-0.6
1,616,665	+				-0.5
1,616,665	+				-1.1
1,616,665	+				+1.0
1,616,665	+				-0.0
1,616,666	-				+0.2
1,616,666	-				-0.5
1,616,666	-				+1.3
1,616,666	-				+1.0
1,616,666	-				-1.1
1,616,679	+				-1.3
1,616,679	+				-0.2
1,616,679	+				-0.3
1,616,679	+				+0.1
1,616,680	-				-0.2