Strain Fitness in Pantoea sp. MT58 around IAI47_20920

Experiment: Ying_all64 rep A; time point 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_20915 and IAI47_20920 are separated by 3 nucleotidesIAI47_20920 and IAI47_20925 are separated by 10 nucleotides IAI47_20915: IAI47_20915 - glycosyl hydrolase 53 family protein, at 429,964 to 431,157 _20915 IAI47_20920: IAI47_20920 - sugar ABC transporter permease, at 431,161 to 432,012 _20920 IAI47_20925: IAI47_20925 - sugar ABC transporter permease, at 432,023 to 433,330 _20925 Position (kb) 431 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 430.187 kb on + strand, within IAI47_20915at 430.188 kb on - strand, within IAI47_20915at 430.188 kb on - strand, within IAI47_20915at 430.188 kb on - strand, within IAI47_20915at 430.284 kb on - strand, within IAI47_20915at 430.322 kb on + strand, within IAI47_20915at 430.335 kb on + strand, within IAI47_20915at 430.336 kb on - strand, within IAI47_20915at 430.336 kb on - strand, within IAI47_20915at 430.336 kb on - strand, within IAI47_20915at 430.336 kb on - strand, within IAI47_20915at 430.336 kb on - strand, within IAI47_20915at 430.336 kb on - strand, within IAI47_20915at 430.379 kb on + strand, within IAI47_20915at 430.380 kb on - strand, within IAI47_20915at 430.385 kb on + strand, within IAI47_20915at 430.385 kb on + strand, within IAI47_20915at 430.385 kb on + strand, within IAI47_20915at 430.385 kb on + strand, within IAI47_20915at 430.385 kb on + strand, within IAI47_20915at 430.385 kb on + strand, within IAI47_20915at 430.385 kb on + strand, within IAI47_20915at 430.386 kb on - strand, within IAI47_20915at 430.386 kb on - strand, within IAI47_20915at 430.386 kb on - strand, within IAI47_20915at 430.386 kb on - strand, within IAI47_20915at 430.597 kb on - strand, within IAI47_20915at 430.597 kb on - strand, within IAI47_20915at 430.597 kb on - strand, within IAI47_20915at 430.623 kb on + strand, within IAI47_20915at 430.632 kb on + strand, within IAI47_20915at 430.657 kb on + strand, within IAI47_20915at 430.657 kb on + strand, within IAI47_20915at 430.657 kb on + strand, within IAI47_20915at 430.657 kb on + strand, within IAI47_20915at 430.657 kb on + strand, within IAI47_20915at 430.657 kb on + strand, within IAI47_20915at 430.657 kb on + strand, within IAI47_20915at 430.657 kb on + strand, within IAI47_20915at 430.658 kb on - strand, within IAI47_20915at 430.697 kb on + strand, within IAI47_20915at 430.698 kb on - strand, within IAI47_20915at 430.790 kb on + strand, within IAI47_20915at 430.791 kb on - strand, within IAI47_20915at 430.791 kb on - strand, within IAI47_20915at 430.791 kb on - strand, within IAI47_20915at 430.791 kb on - strand, within IAI47_20915at 430.797 kb on + strand, within IAI47_20915at 430.938 kb on + strand, within IAI47_20915at 431.034 kb on + strand, within IAI47_20915at 431.034 kb on + strand, within IAI47_20915at 431.035 kb on - strand, within IAI47_20915at 431.035 kb on - strand, within IAI47_20915at 431.050 kb on - strandat 431.050 kb on - strandat 431.163 kb on - strandat 431.163 kb on - strandat 431.169 kb on + strandat 431.169 kb on + strandat 431.170 kb on - strandat 431.170 kb on - strandat 431.170 kb on - strandat 431.170 kb on - strandat 431.170 kb on - strandat 431.170 kb on - strandat 431.170 kb on - strandat 431.173 kb on - strandat 431.202 kb on - strandat 431.202 kb on - strandat 431.220 kb on - strandat 431.220 kb on - strandat 431.220 kb on - strandat 431.264 kb on + strand, within IAI47_20920at 431.264 kb on + strand, within IAI47_20920at 431.264 kb on + strand, within IAI47_20920at 431.264 kb on + strand, within IAI47_20920at 431.264 kb on + strand, within IAI47_20920at 431.265 kb on - strand, within IAI47_20920at 431.265 kb on - strand, within IAI47_20920at 431.265 kb on - strand, within IAI47_20920at 431.265 kb on - strand, within IAI47_20920at 431.265 kb on - strand, within IAI47_20920at 431.273 kb on + strand, within IAI47_20920at 431.273 kb on + strand, within IAI47_20920at 431.274 kb on - strand, within IAI47_20920at 431.304 kb on + strand, within IAI47_20920at 431.304 kb on + strand, within IAI47_20920at 431.304 kb on + strand, within IAI47_20920at 431.306 kb on + strand, within IAI47_20920at 431.306 kb on + strand, within IAI47_20920at 431.306 kb on + strand, within IAI47_20920at 431.306 kb on + strand, within IAI47_20920at 431.306 kb on + strand, within IAI47_20920at 431.307 kb on - strand, within IAI47_20920at 431.307 kb on - strand, within IAI47_20920at 431.307 kb on - strand, within IAI47_20920at 431.365 kb on - strand, within IAI47_20920at 431.460 kb on + strand, within IAI47_20920at 431.516 kb on + strand, within IAI47_20920at 431.531 kb on + strand, within IAI47_20920at 431.531 kb on + strand, within IAI47_20920at 431.531 kb on + strand, within IAI47_20920at 431.531 kb on + strand, within IAI47_20920at 431.531 kb on + strand, within IAI47_20920at 431.531 kb on + strand, within IAI47_20920at 431.532 kb on - strand, within IAI47_20920at 431.532 kb on - strand, within IAI47_20920at 431.532 kb on - strand, within IAI47_20920at 431.532 kb on - strand, within IAI47_20920at 431.561 kb on + strand, within IAI47_20920at 431.561 kb on + strand, within IAI47_20920at 431.561 kb on + strand, within IAI47_20920at 431.562 kb on - strand, within IAI47_20920at 431.562 kb on - strand, within IAI47_20920at 431.562 kb on - strand, within IAI47_20920at 431.562 kb on - strand, within IAI47_20920at 431.562 kb on - strand, within IAI47_20920at 431.562 kb on - strand, within IAI47_20920at 431.562 kb on - strand, within IAI47_20920at 431.594 kb on - strand, within IAI47_20920at 431.694 kb on + strand, within IAI47_20920at 431.718 kb on - strand, within IAI47_20920at 431.786 kb on + strand, within IAI47_20920at 431.796 kb on + strand, within IAI47_20920at 431.796 kb on + strand, within IAI47_20920at 431.796 kb on + strand, within IAI47_20920at 431.797 kb on - strand, within IAI47_20920at 431.797 kb on - strand, within IAI47_20920at 431.797 kb on - strand, within IAI47_20920at 431.797 kb on - strand, within IAI47_20920at 431.797 kb on - strand, within IAI47_20920at 431.797 kb on - strand, within IAI47_20920at 431.798 kb on + strand, within IAI47_20920at 431.799 kb on - strand, within IAI47_20920at 431.799 kb on - strand, within IAI47_20920at 431.799 kb on - strand, within IAI47_20920at 431.799 kb on - strand, within IAI47_20920at 431.799 kb on - strand, within IAI47_20920at 431.828 kb on + strand, within IAI47_20920at 431.880 kb on + strand, within IAI47_20920at 431.880 kb on + strand, within IAI47_20920at 431.880 kb on + strand, within IAI47_20920at 431.881 kb on - strand, within IAI47_20920at 431.881 kb on - strand, within IAI47_20920at 431.922 kb on - strand, within IAI47_20920at 431.925 kb on + strand, within IAI47_20920at 431.925 kb on + strand, within IAI47_20920at 431.925 kb on + strand, within IAI47_20920at 431.925 kb on + strand, within IAI47_20920at 431.925 kb on + strand, within IAI47_20920at 431.926 kb on - strand, within IAI47_20920at 431.926 kb on - strand, within IAI47_20920at 431.926 kb on - strand, within IAI47_20920at 431.926 kb on - strand, within IAI47_20920at 431.926 kb on - strand, within IAI47_20920at 431.926 kb on - strand, within IAI47_20920at 431.974 kb on + strandat 431.974 kb on + strandat 431.992 kb on - strandat 431.994 kb on + strandat 431.995 kb on - strandat 432.012 kb on + strandat 432.012 kb on + strandat 432.012 kb on + strandat 432.012 kb on + strandat 432.012 kb on + strandat 432.013 kb on - strandat 432.013 kb on - strandat 432.013 kb on - strandat 432.013 kb on - strandat 432.083 kb on + strandat 432.083 kb on + strandat 432.083 kb on + strandat 432.083 kb on + strandat 432.083 kb on + strandat 432.084 kb on - strandat 432.130 kb on - strandat 432.156 kb on + strand, within IAI47_20925at 432.157 kb on - strand, within IAI47_20925at 432.157 kb on - strand, within IAI47_20925at 432.224 kb on - strand, within IAI47_20925at 432.231 kb on + strand, within IAI47_20925at 432.231 kb on + strand, within IAI47_20925at 432.264 kb on + strand, within IAI47_20925at 432.264 kb on + strand, within IAI47_20925at 432.264 kb on + strand, within IAI47_20925at 432.264 kb on + strand, within IAI47_20925at 432.264 kb on + strand, within IAI47_20925at 432.265 kb on - strand, within IAI47_20925at 432.294 kb on + strand, within IAI47_20925at 432.366 kb on + strand, within IAI47_20925at 432.366 kb on + strand, within IAI47_20925at 432.367 kb on - strand, within IAI47_20925at 432.491 kb on - strand, within IAI47_20925at 432.604 kb on + strand, within IAI47_20925at 432.629 kb on - strand, within IAI47_20925at 432.763 kb on + strand, within IAI47_20925at 432.763 kb on + strand, within IAI47_20925at 432.763 kb on + strand, within IAI47_20925at 432.763 kb on + strand, within IAI47_20925at 432.764 kb on - strand, within IAI47_20925at 432.766 kb on + strand, within IAI47_20925at 432.766 kb on + strand, within IAI47_20925at 432.826 kb on - strand, within IAI47_20925at 432.826 kb on - strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.834 kb on + strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.835 kb on - strand, within IAI47_20925at 432.838 kb on + strand, within IAI47_20925at 432.839 kb on - strand, within IAI47_20925at 432.839 kb on - strand, within IAI47_20925at 432.839 kb on - strand, within IAI47_20925at 432.899 kb on - strand, within IAI47_20925at 432.921 kb on + strand, within IAI47_20925at 432.944 kb on + strand, within IAI47_20925at 432.945 kb on - strand, within IAI47_20925at 432.945 kb on - strand, within IAI47_20925at 432.951 kb on + strand, within IAI47_20925at 432.951 kb on + strand, within IAI47_20925at 432.952 kb on - strand, within IAI47_20925at 432.971 kb on - strand, within IAI47_20925at 432.994 kb on + strand, within IAI47_20925at 432.994 kb on + strand, within IAI47_20925at 432.994 kb on + strand, within IAI47_20925at 432.995 kb on - strand, within IAI47_20925

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2
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430,187 + IAI47_20915 0.19 +0.2
430,188 - IAI47_20915 0.19 +0.1
430,188 - IAI47_20915 0.19 +1.1
430,188 - IAI47_20915 0.19 +1.4
430,284 - IAI47_20915 0.27 -0.4
430,322 + IAI47_20915 0.30 +0.1
430,335 + IAI47_20915 0.31 +0.3
430,336 - IAI47_20915 0.31 +0.9
430,336 - IAI47_20915 0.31 +0.7
430,336 - IAI47_20915 0.31 +0.7
430,336 - IAI47_20915 0.31 -0.1
430,336 - IAI47_20915 0.31 +0.4
430,336 - IAI47_20915 0.31 +0.6
430,379 + IAI47_20915 0.35 -0.4
430,380 - IAI47_20915 0.35 +0.7
430,385 + IAI47_20915 0.35 -1.3
430,385 + IAI47_20915 0.35 -1.9
430,385 + IAI47_20915 0.35 -0.7
430,385 + IAI47_20915 0.35 -0.3
430,385 + IAI47_20915 0.35 +0.7
430,385 + IAI47_20915 0.35 -1.1
430,385 + IAI47_20915 0.35 -1.6
430,386 - IAI47_20915 0.35 +2.7
430,386 - IAI47_20915 0.35 +1.7
430,386 - IAI47_20915 0.35 -0.5
430,386 - IAI47_20915 0.35 +0.9
430,597 - IAI47_20915 0.53 +0.4
430,597 - IAI47_20915 0.53 +1.4
430,597 - IAI47_20915 0.53 +0.6
430,623 + IAI47_20915 0.55 -0.7
430,632 + IAI47_20915 0.56 +0.1
430,657 + IAI47_20915 0.58 +0.7
430,657 + IAI47_20915 0.58 -0.1
430,657 + IAI47_20915 0.58 -0.3
430,657 + IAI47_20915 0.58 +0.1
430,657 + IAI47_20915 0.58 +1.1
430,657 + IAI47_20915 0.58 -3.3
430,657 + IAI47_20915 0.58 +0.1
430,657 + IAI47_20915 0.58 +1.9
430,658 - IAI47_20915 0.58 +0.6
430,697 + IAI47_20915 0.61 +0.7
430,698 - IAI47_20915 0.61 +0.1
430,790 + IAI47_20915 0.69 +1.2
430,791 - IAI47_20915 0.69 +0.0
430,791 - IAI47_20915 0.69 -1.3
430,791 - IAI47_20915 0.69 +0.1
430,791 - IAI47_20915 0.69 -1.1
430,797 + IAI47_20915 0.70 -0.6
430,938 + IAI47_20915 0.82 -1.4
431,034 + IAI47_20915 0.90 +2.3
431,034 + IAI47_20915 0.90 +0.2
431,035 - IAI47_20915 0.90 +1.4
431,035 - IAI47_20915 0.90 -0.3
431,050 - -0.4
431,050 - +1.1
431,163 - +0.7
431,163 - +0.3
431,169 + -0.5
431,169 + +1.3
431,170 - +0.7
431,170 - -0.3
431,170 - +0.7
431,170 - -1.3
431,170 - -1.1
431,170 - +0.2
431,170 - +0.8
431,173 - +1.4
431,202 - -1.1
431,202 - -1.5
431,220 - -0.9
431,220 - -0.2
431,220 - +0.7
431,264 + IAI47_20920 0.12 -0.3
431,264 + IAI47_20920 0.12 -2.1
431,264 + IAI47_20920 0.12 -2.6
431,264 + IAI47_20920 0.12 +0.0
431,264 + IAI47_20920 0.12 -0.6
431,265 - IAI47_20920 0.12 +0.3
431,265 - IAI47_20920 0.12 +0.7
431,265 - IAI47_20920 0.12 -0.9
431,265 - IAI47_20920 0.12 +0.5
431,265 - IAI47_20920 0.12 +0.2
431,273 + IAI47_20920 0.13 +0.5
431,273 + IAI47_20920 0.13 -0.0
431,274 - IAI47_20920 0.13 -0.6
431,304 + IAI47_20920 0.17 +0.4
431,304 + IAI47_20920 0.17 +0.5
431,304 + IAI47_20920 0.17 +2.0
431,306 + IAI47_20920 0.17 +2.5
431,306 + IAI47_20920 0.17 +0.5
431,306 + IAI47_20920 0.17 +0.4
431,306 + IAI47_20920 0.17 +2.0
431,306 + IAI47_20920 0.17 -0.7
431,307 - IAI47_20920 0.17 -0.3
431,307 - IAI47_20920 0.17 +2.6
431,307 - IAI47_20920 0.17 +0.3
431,365 - IAI47_20920 0.24 +0.7
431,460 + IAI47_20920 0.35 +1.1
431,516 + IAI47_20920 0.42 +2.5
431,531 + IAI47_20920 0.43 -0.6
431,531 + IAI47_20920 0.43 +1.7
431,531 + IAI47_20920 0.43 +0.1
431,531 + IAI47_20920 0.43 +0.6
431,531 + IAI47_20920 0.43 +0.5
431,531 + IAI47_20920 0.43 -0.5
431,532 - IAI47_20920 0.44 -1.4
431,532 - IAI47_20920 0.44 +1.2
431,532 - IAI47_20920 0.44 -1.2
431,532 - IAI47_20920 0.44 -2.6
431,561 + IAI47_20920 0.47 +1.0
431,561 + IAI47_20920 0.47 +0.1
431,561 + IAI47_20920 0.47 -0.6
431,562 - IAI47_20920 0.47 -0.5
431,562 - IAI47_20920 0.47 -0.5
431,562 - IAI47_20920 0.47 +2.1
431,562 - IAI47_20920 0.47 +0.1
431,562 - IAI47_20920 0.47 +0.1
431,562 - IAI47_20920 0.47 +1.7
431,562 - IAI47_20920 0.47 +1.0
431,594 - IAI47_20920 0.51 +0.4
431,694 + IAI47_20920 0.63 -0.2
431,718 - IAI47_20920 0.65 -1.1
431,786 + IAI47_20920 0.73 +0.5
431,796 + IAI47_20920 0.75 +1.1
431,796 + IAI47_20920 0.75 +0.2
431,796 + IAI47_20920 0.75 +0.7
431,797 - IAI47_20920 0.75 +1.2
431,797 - IAI47_20920 0.75 -0.6
431,797 - IAI47_20920 0.75 -0.7
431,797 - IAI47_20920 0.75 +1.8
431,797 - IAI47_20920 0.75 -0.3
431,797 - IAI47_20920 0.75 -0.5
431,798 + IAI47_20920 0.75 +0.9
431,799 - IAI47_20920 0.75 +0.7
431,799 - IAI47_20920 0.75 +0.7
431,799 - IAI47_20920 0.75 +0.3
431,799 - IAI47_20920 0.75 +1.6
431,799 - IAI47_20920 0.75 -0.1
431,828 + IAI47_20920 0.78 +3.1
431,880 + IAI47_20920 0.84 -0.1
431,880 + IAI47_20920 0.84 -2.3
431,880 + IAI47_20920 0.84 -0.3
431,881 - IAI47_20920 0.85 -1.4
431,881 - IAI47_20920 0.85 -1.0
431,922 - IAI47_20920 0.89 +0.7
431,925 + IAI47_20920 0.90 +0.5
431,925 + IAI47_20920 0.90 -0.3
431,925 + IAI47_20920 0.90 +0.7
431,925 + IAI47_20920 0.90 +0.2
431,925 + IAI47_20920 0.90 -0.4
431,926 - IAI47_20920 0.90 +0.3
431,926 - IAI47_20920 0.90 +0.7
431,926 - IAI47_20920 0.90 -0.4
431,926 - IAI47_20920 0.90 -0.1
431,926 - IAI47_20920 0.90 -0.3
431,926 - IAI47_20920 0.90 -0.3
431,974 + +1.1
431,974 + +1.6
431,992 - -1.3
431,994 + +0.5
431,995 - -0.9
432,012 + +0.7
432,012 + +0.1
432,012 + -0.0
432,012 + +0.7
432,012 + +0.8
432,013 - -1.3
432,013 - -1.3
432,013 - -1.3
432,013 - +2.1
432,083 + +1.0
432,083 + -0.3
432,083 + -0.4
432,083 + -3.4
432,083 + +1.2
432,084 - +2.1
432,130 - +0.2
432,156 + IAI47_20925 0.10 +1.1
432,157 - IAI47_20925 0.10 +1.4
432,157 - IAI47_20925 0.10 -0.0
432,224 - IAI47_20925 0.15 +1.6
432,231 + IAI47_20925 0.16 -0.3
432,231 + IAI47_20925 0.16 -0.1
432,264 + IAI47_20925 0.18 -0.4
432,264 + IAI47_20925 0.18 +0.5
432,264 + IAI47_20925 0.18 +1.5
432,264 + IAI47_20925 0.18 -1.3
432,264 + IAI47_20925 0.18 +1.5
432,265 - IAI47_20925 0.19 +1.1
432,294 + IAI47_20925 0.21 -0.5
432,366 + IAI47_20925 0.26 +1.0
432,366 + IAI47_20925 0.26 +1.9
432,367 - IAI47_20925 0.26 +0.1
432,491 - IAI47_20925 0.36 +0.5
432,604 + IAI47_20925 0.44 -0.6
432,629 - IAI47_20925 0.46 -0.3
432,763 + IAI47_20925 0.57 +0.5
432,763 + IAI47_20925 0.57 -0.3
432,763 + IAI47_20925 0.57 -3.0
432,763 + IAI47_20925 0.57 -0.0
432,764 - IAI47_20925 0.57 -1.9
432,766 + IAI47_20925 0.57 -1.6
432,766 + IAI47_20925 0.57 -0.0
432,826 - IAI47_20925 0.61 -1.5
432,826 - IAI47_20925 0.61 +0.1
432,834 + IAI47_20925 0.62 -0.7
432,834 + IAI47_20925 0.62 -0.0
432,834 + IAI47_20925 0.62 -0.3
432,834 + IAI47_20925 0.62 +0.1
432,834 + IAI47_20925 0.62 -0.3
432,835 - IAI47_20925 0.62 -0.5
432,835 - IAI47_20925 0.62 +0.9
432,835 - IAI47_20925 0.62 -0.3
432,835 - IAI47_20925 0.62 +0.6
432,835 - IAI47_20925 0.62 +0.7
432,835 - IAI47_20925 0.62 +0.4
432,838 + IAI47_20925 0.62 +0.5
432,839 - IAI47_20925 0.62 +0.1
432,839 - IAI47_20925 0.62 +1.1
432,839 - IAI47_20925 0.62 -0.1
432,899 - IAI47_20925 0.67 -1.3
432,921 + IAI47_20925 0.69 +0.4
432,944 + IAI47_20925 0.70 +1.1
432,945 - IAI47_20925 0.70 +1.7
432,945 - IAI47_20925 0.70 +0.1
432,951 + IAI47_20925 0.71 -1.0
432,951 + IAI47_20925 0.71 +2.3
432,952 - IAI47_20925 0.71 -1.2
432,971 - IAI47_20925 0.72 +0.9
432,994 + IAI47_20925 0.74 -0.6
432,994 + IAI47_20925 0.74 -0.3
432,994 + IAI47_20925 0.74 -0.1
432,995 - IAI47_20925 0.74 -1.7

Or see this region's nucleotide sequence