Strain Fitness in Pantoea sp. MT58 around IAI47_19210

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
68,368	+				-0.1
68,368	+				-1.0
68,369	-				-0.6
68,395	+				-0.9
68,396	-				-0.8
68,434	+				+0.2
68,434	+				-2.0
68,434	+				-1.0
68,435	-				-0.5
68,435	-				+1.2
68,435	-				+1.4
68,435	-				+0.4
68,435	-				+1.3
68,435	-				+0.2
68,435	-				+0.1
68,475	+				+0.2
68,475	+				-0.5
68,475	+				+0.2
68,476	-				+0.9
68,539	+		IAI47_19205	0.13	-1.0
68,539	+		IAI47_19205	0.13	+0.0
68,540	-		IAI47_19205	0.13	+0.7
68,610	+		IAI47_19205	0.22	-0.4
68,610	+		IAI47_19205	0.22	+0.1
68,610	+		IAI47_19205	0.22	+0.4
68,610	+		IAI47_19205	0.22	+0.0
68,611	-		IAI47_19205	0.22	-0.4
68,614	+		IAI47_19205	0.22	+0.8
68,614	+		IAI47_19205	0.22	-1.1
68,615	-		IAI47_19205	0.23	-1.3
68,639	+		IAI47_19205	0.26	+0.8
68,639	+		IAI47_19205	0.26	+0.8
68,639	+		IAI47_19205	0.26	-0.7
68,639	+		IAI47_19205	0.26	-0.6
68,639	+		IAI47_19205	0.26	-0.2
68,639	+		IAI47_19205	0.26	-0.2
68,639	+		IAI47_19205	0.26	-1.2
68,639	+		IAI47_19205	0.26	-0.6
68,639	+		IAI47_19205	0.26	-1.2
68,639	+		IAI47_19205	0.26	+0.3
68,640	-		IAI47_19205	0.26	-2.4
68,640	-		IAI47_19205	0.26	+0.1
68,640	-		IAI47_19205	0.26	-0.1
68,650	+		IAI47_19205	0.27	+1.6
68,650	+		IAI47_19205	0.27	+0.5
68,651	-		IAI47_19205	0.27	+1.0
68,700	+		IAI47_19205	0.33	-2.5
68,700	+		IAI47_19205	0.33	+2.6
68,700	+		IAI47_19205	0.33	-0.8
68,701	-		IAI47_19205	0.33	+1.4
68,701	-		IAI47_19205	0.33	+1.8
68,753	+		IAI47_19205	0.40	+3.0
68,754	-		IAI47_19205	0.40	-0.1
68,754	-		IAI47_19205	0.40	+2.4
68,757	+		IAI47_19205	0.41	+0.5
68,757	+		IAI47_19205	0.41	-1.5
68,757	+		IAI47_19205	0.41	-1.2
68,757	+		IAI47_19205	0.41	+0.5
68,757	+		IAI47_19205	0.41	+3.1
68,758	-		IAI47_19205	0.41	-0.8
68,758	-		IAI47_19205	0.41	-0.2
68,758	-		IAI47_19205	0.41	+0.5
68,766	+		IAI47_19205	0.42	+1.8
68,766	+		IAI47_19205	0.42	+0.7
68,766	+		IAI47_19205	0.42	+1.9
68,766	+		IAI47_19205	0.42	-0.5
68,845	-		IAI47_19205	0.52	-2.1
68,845	-		IAI47_19205	0.52	-0.2
68,870	+		IAI47_19205	0.55	-0.5
68,871	-		IAI47_19205	0.55	+0.3
68,878	+		IAI47_19205	0.56	-0.2
68,879	-		IAI47_19205	0.56	-0.4
68,882	+		IAI47_19205	0.56	+0.0
68,882	+		IAI47_19205	0.56	+1.4
68,883	-		IAI47_19205	0.57	-0.8
68,932	+		IAI47_19205	0.63	+0.1
68,932	+		IAI47_19205	0.63	+1.5
68,932	+		IAI47_19205	0.63	-0.7
68,933	-		IAI47_19205	0.63	+0.1
68,933	-		IAI47_19205	0.63	-0.6
68,933	-		IAI47_19205	0.63	-1.5
68,933	-		IAI47_19205	0.63	+0.3
68,933	-		IAI47_19205	0.63	+1.8
68,934	+		IAI47_19205	0.63	+0.1
68,934	+		IAI47_19205	0.63	+1.0
68,934	+		IAI47_19205	0.63	+0.4
68,934	+		IAI47_19205	0.63	-0.2
68,934	+		IAI47_19205	0.63	-3.1
68,935	-		IAI47_19205	0.63	+1.2
68,935	-		IAI47_19205	0.63	+0.4
68,935	-		IAI47_19205	0.63	-0.2
68,936	+		IAI47_19205	0.63	+0.8
68,936	+		IAI47_19205	0.63	+0.3
68,936	+		IAI47_19205	0.63	+0.7
68,936	+		IAI47_19205	0.63	+0.4
68,936	+		IAI47_19205	0.63	-0.8
68,936	+		IAI47_19205	0.63	+0.8
68,936	+		IAI47_19205	0.63	-0.0
68,936	+		IAI47_19205	0.63	+0.9
68,936	+		IAI47_19205	0.63	+0.8
68,937	-		IAI47_19205	0.63	-0.8
68,937	-		IAI47_19205	0.63	-0.8
68,937	-		IAI47_19205	0.63	-1.2
68,937	-		IAI47_19205	0.63	+0.4
68,937	-		IAI47_19205	0.63	+0.2
68,937	-		IAI47_19205	0.63	+1.4
68,937	-		IAI47_19205	0.63	-1.3
68,937	-		IAI47_19205	0.63	+0.5
68,937	-		IAI47_19205	0.63	-1.1
68,948	+		IAI47_19205	0.65	+1.8
68,977	-		IAI47_19205	0.69	-0.2
68,996	+		IAI47_19205	0.71	+0.5
68,996	+		IAI47_19205	0.71	+3.4
68,996	+		IAI47_19205	0.71	-0.5
68,997	-		IAI47_19205	0.71	-1.0
68,997	-		IAI47_19205	0.71	-0.6
69,086	+		IAI47_19205	0.82	-0.5
69,130	+		IAI47_19205	0.88	+0.3
69,149	-				+1.2
69,164	+				-0.8
69,164	+				+0.5
69,221	+				+1.8
69,221	+				-0.1
69,222	-				-1.2
69,242	-				-0.0
69,285	+				+0.9
69,285	+				+1.5
69,285	+				-1.2
69,286	-				-1.7
69,289	+				+2.4
69,296	+				-0.8
69,297	-				+0.5
69,308	+				-0.5
69,308	+				-1.8
69,309	-				-0.0
69,309	-				-0.8
69,309	-				-1.2
69,309	-				-0.4
69,318	+				-0.2
69,318	+				-0.3
69,318	+				-1.2
69,319	-				+0.4
69,403	+		IAI47_19210	0.18	-0.7
69,403	+		IAI47_19210	0.18	+0.4
69,404	-		IAI47_19210	0.18	+0.8
69,404	-		IAI47_19210	0.18	-0.7
69,454	+		IAI47_19210	0.38	+0.3
69,454	+		IAI47_19210	0.38	-1.4
69,454	+		IAI47_19210	0.38	+0.0
69,454	+		IAI47_19210	0.38	-0.2
69,455	-		IAI47_19210	0.39	-1.7
69,455	-		IAI47_19210	0.39	-2.0
69,455	-		IAI47_19210	0.39	-0.9
69,455	-		IAI47_19210	0.39	+0.3
69,456	+		IAI47_19210	0.39	-1.5
69,456	+		IAI47_19210	0.39	+0.8
69,456	+		IAI47_19210	0.39	+0.4
69,456	+		IAI47_19210	0.39	-1.2
69,457	-		IAI47_19210	0.39	+0.1
69,457	-		IAI47_19210	0.39	-1.5
69,481	+		IAI47_19210	0.49	+0.0
69,481	+		IAI47_19210	0.49	-0.2
69,481	+		IAI47_19210	0.49	+0.8
69,481	+		IAI47_19210	0.49	+1.4
69,481	+		IAI47_19210	0.49	-0.2
69,482	-		IAI47_19210	0.49	-0.7
69,482	-		IAI47_19210	0.49	-1.4
69,482	-		IAI47_19210	0.49	-2.7
69,482	-		IAI47_19210	0.49	-0.6
69,482	-		IAI47_19210	0.49	-0.1
69,482	-		IAI47_19210	0.49	-0.2
69,544	-		IAI47_19210	0.74	+0.6
69,544	-		IAI47_19210	0.74	-0.7
69,544	-		IAI47_19210	0.74	+0.4
69,544	-		IAI47_19210	0.74	+0.6
69,544	-		IAI47_19210	0.74	+0.0
69,559	+		IAI47_19210	0.80	+1.0
69,560	-		IAI47_19210	0.81	-0.2
69,560	-		IAI47_19210	0.81	+1.5
69,632	+				-0.4
69,633	-				-0.9
69,729	+				+0.2
69,729	+				+0.7
69,729	+				+0.2
69,729	+				-1.1
69,729	+				+0.3
69,730	-				-0.1
69,730	-				-1.9
69,730	-				-0.3
69,730	-				+0.5
69,730	-				+1.4
69,730	-				+0.2
69,735	+				-2.7
69,735	+				-0.2
69,735	+				-0.8
69,735	+				+0.7
69,735	+				-0.6
69,735	+				-0.2
69,735	+				-0.2
69,735	+				+0.4
69,735	+				+0.1
69,735	+				-0.8
69,736	-				+0.4
69,736	-				+0.8
69,736	-				+0.8
69,736	-				+2.4
69,736	-				-0.7
69,736	-				+0.3
69,736	-				-0.8
69,736	-				-0.8
69,737	+				+0.2
69,738	-				-0.4
69,738	-				+0.4
69,738	-				-0.3
69,752	+				+0.3
69,753	-				+0.0
69,753	-				+1.3
69,813	-				-1.3
69,836	+				+0.2
69,836	+				+0.2
69,841	+				-0.5
69,841	+				+1.5
69,842	-				-2.7
69,842	-				-1.2
69,842	-				+2.4
69,851	+				-1.1
69,909	-				-0.7
69,918	+				+0.3
69,918	+				+0.8
69,919	-				-2.0
69,940	-				-0.0
69,945	+				+0.1
69,945	+				+0.8
69,945	+				-0.6
69,946	-				-0.8
69,946	-				-0.8
69,988	+				+0.6
69,988	+				+0.7
69,989	-				-0.4
69,989	-				+0.5
70,108	+		IAI47_19215	0.18	-1.2
70,108	+		IAI47_19215	0.18	+1.4
70,109	-		IAI47_19215	0.18	-0.4
70,109	-		IAI47_19215	0.18	+0.2
70,109	-		IAI47_19215	0.18	+0.3
70,109	-		IAI47_19215	0.18	-2.9
70,109	-		IAI47_19215	0.18	-0.9
70,178	-		IAI47_19215	0.25	-0.3
70,178	-		IAI47_19215	0.25	-0.2
70,178	-		IAI47_19215	0.25	-0.0
70,178	-		IAI47_19215	0.25	+0.3
70,208	+		IAI47_19215	0.28	-1.1
70,209	-		IAI47_19215	0.28	-0.8
70,261	-		IAI47_19215	0.34	-0.4
70,270	+		IAI47_19215	0.35	-1.0
70,271	-		IAI47_19215	0.35	-1.5
70,271	-		IAI47_19215	0.35	-0.2
70,282	+		IAI47_19215	0.36	-0.2
70,283	-		IAI47_19215	0.36	-0.2
70,325	+		IAI47_19215	0.40	+0.3
70,326	-		IAI47_19215	0.40	-0.2
70,326	-		IAI47_19215	0.40	+0.5
70,326	-		IAI47_19215	0.40	-1.0
70,328	+		IAI47_19215	0.41	+0.8
70,329	-		IAI47_19215	0.41	-1.4
70,403	+		IAI47_19215	0.48	-1.1
70,403	+		IAI47_19215	0.48	-0.4
70,473	+		IAI47_19215	0.55	-1.3
70,473	+		IAI47_19215	0.55	-0.2
70,473	+		IAI47_19215	0.55	+0.6
70,473	+		IAI47_19215	0.55	-1.5
70,473	+		IAI47_19215	0.55	-1.7
70,473	+		IAI47_19215	0.55	-0.5
70,473	+		IAI47_19215	0.55	-0.5
70,473	+		IAI47_19215	0.55	-0.7
70,473	+		IAI47_19215	0.55	-1.1
70,473	+		IAI47_19215	0.55	+0.2
70,473	+		IAI47_19215	0.55	-1.8
70,473	+		IAI47_19215	0.55	-1.6
70,473	+		IAI47_19215	0.55	-1.2
70,473	+		IAI47_19215	0.55	-0.7
70,474	-		IAI47_19215	0.56	-1.5
70,474	-		IAI47_19215	0.56	+0.3
70,474	-		IAI47_19215	0.56	-0.8
70,474	-		IAI47_19215	0.56	-0.5
70,474	-		IAI47_19215	0.56	-1.2
70,474	-		IAI47_19215	0.56	-1.4
70,474	-		IAI47_19215	0.56	-0.5
70,474	-		IAI47_19215	0.56	-1.1
70,474	-		IAI47_19215	0.56	-0.6
70,474	-		IAI47_19215	0.56	-2.0
70,474	-		IAI47_19215	0.56	-0.5
70,474	-		IAI47_19215	0.56	-2.3
70,474	-		IAI47_19215	0.56	-0.5
70,474	-		IAI47_19215	0.56	-2.4
70,474	-		IAI47_19215	0.56	+1.7
70,474	-		IAI47_19215	0.56	-1.8
70,474	-		IAI47_19215	0.56	+0.2
70,474	-		IAI47_19215	0.56	-1.5
70,477	+		IAI47_19215	0.56	-1.4
70,477	+		IAI47_19215	0.56	+2.8
70,477	+		IAI47_19215	0.56	-0.7
70,477	+		IAI47_19215	0.56	+0.6
70,477	+		IAI47_19215	0.56	+0.6
70,478	-		IAI47_19215	0.56	-1.2
70,478	-		IAI47_19215	0.56	-0.2
70,478	-		IAI47_19215	0.56	-1.5
70,478	-		IAI47_19215	0.56	-0.3
70,478	-		IAI47_19215	0.56	-2.8
70,478	-		IAI47_19215	0.56	+0.4
70,478	-		IAI47_19215	0.56	+1.8
70,478	-		IAI47_19215	0.56	+0.2
70,478	-		IAI47_19215	0.56	-2.7
70,478	-		IAI47_19215	0.56	-2.1
70,478	-		IAI47_19215	0.56	-0.4
70,555	+		IAI47_19215	0.64	-0.9
70,555	+		IAI47_19215	0.64	-1.0
70,555	+		IAI47_19215	0.64	-0.2
70,555	+		IAI47_19215	0.64	-1.8
70,556	-		IAI47_19215	0.64	-1.5
70,558	+		IAI47_19215	0.64	-0.5
70,558	+		IAI47_19215	0.64	-1.3
70,558	+		IAI47_19215	0.64	-1.3
70,558	+		IAI47_19215	0.64	-1.9
70,559	-		IAI47_19215	0.64	-1.4