Strain Fitness in Pantoea sp. MT58 around IAI47_11565

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
2,449,437	+		IAI47_11560	0.80	+0.1
2,449,443	+		IAI47_11560	0.80	-0.4
2,449,443	+		IAI47_11560	0.80	-0.1
2,449,444	-		IAI47_11560	0.80	+1.9
2,449,464	+		IAI47_11560	0.81	-0.2
2,449,464	+		IAI47_11560	0.81	-0.5
2,449,464	+		IAI47_11560	0.81	+0.7
2,449,464	+		IAI47_11560	0.81	+0.3
2,449,465	-		IAI47_11560	0.81	+0.9
2,449,465	-		IAI47_11560	0.81	-0.1
2,449,465	-		IAI47_11560	0.81	+1.3
2,449,473	+		IAI47_11560	0.81	+1.1
2,449,473	+		IAI47_11560	0.81	-0.6
2,449,473	+		IAI47_11560	0.81	+0.9
2,449,473	+		IAI47_11560	0.81	+0.7
2,449,565	+		IAI47_11560	0.83	-0.2
2,449,616	-		IAI47_11560	0.84	-0.5
2,449,620	+		IAI47_11560	0.84	-0.9
2,449,621	-		IAI47_11560	0.84	-0.0
2,449,629	+		IAI47_11560	0.84	+1.7
2,449,629	+		IAI47_11560	0.84	-0.0
2,449,629	+		IAI47_11560	0.84	+1.1
2,449,629	+		IAI47_11560	0.84	-0.1
2,449,629	+		IAI47_11560	0.84	+1.0
2,449,629	+		IAI47_11560	0.84	-1.5
2,449,630	-		IAI47_11560	0.84	+0.8
2,449,630	-		IAI47_11560	0.84	+0.4
2,449,630	-		IAI47_11560	0.84	-1.7
2,449,631	+		IAI47_11560	0.84	-1.1
2,449,631	+		IAI47_11560	0.84	-0.0
2,449,631	+		IAI47_11560	0.84	+0.2
2,449,631	+		IAI47_11560	0.84	-0.4
2,449,631	+		IAI47_11560	0.84	-0.1
2,449,631	+		IAI47_11560	0.84	+0.5
2,449,632	-		IAI47_11560	0.84	+0.5
2,449,632	-		IAI47_11560	0.84	-0.0
2,449,632	-		IAI47_11560	0.84	-0.6
2,449,632	-		IAI47_11560	0.84	-2.8
2,449,632	-		IAI47_11560	0.84	-0.1
2,449,632	-		IAI47_11560	0.84	-0.0
2,449,632	-		IAI47_11560	0.84	+0.4
2,449,632	-		IAI47_11560	0.84	-0.5
2,449,632	-		IAI47_11560	0.84	+0.7
2,449,632	-		IAI47_11560	0.84	-0.2
2,449,671	+		IAI47_11560	0.85	+0.1
2,449,671	+		IAI47_11560	0.85	-0.4
2,449,671	+		IAI47_11560	0.85	-1.0
2,449,671	+		IAI47_11560	0.85	+1.5
2,449,671	+		IAI47_11560	0.85	+0.3
2,449,671	+		IAI47_11560	0.85	+1.1
2,449,671	+		IAI47_11560	0.85	+0.9
2,449,671	+		IAI47_11560	0.85	+1.4
2,449,671	+		IAI47_11560	0.85	-0.1
2,449,671	+		IAI47_11560	0.85	-0.7
2,449,671	+		IAI47_11560	0.85	-0.5
2,449,672	-		IAI47_11560	0.85	-0.1
2,449,672	-		IAI47_11560	0.85	-1.1
2,449,672	-		IAI47_11560	0.85	-1.5
2,449,672	-		IAI47_11560	0.85	-0.2
2,449,672	-		IAI47_11560	0.85	-0.2
2,449,672	-		IAI47_11560	0.85	-1.6
2,449,693	+		IAI47_11560	0.86	-0.7
2,449,694	-		IAI47_11560	0.86	+0.3
2,449,716	+		IAI47_11560	0.86	-0.9
2,449,719	+		IAI47_11560	0.86	-0.5
2,449,720	-		IAI47_11560	0.86	-0.0
2,449,749	+		IAI47_11560	0.87	+0.5
2,449,749	+		IAI47_11560	0.87	-0.5
2,449,767	+		IAI47_11560	0.88	-1.0
2,449,775	-		IAI47_11560	0.88	-0.0
2,449,800	+		IAI47_11560	0.88	+0.9
2,449,806	+		IAI47_11560	0.88	-0.1
2,449,807	-		IAI47_11560	0.88	+0.8
2,449,807	-		IAI47_11560	0.88	+0.5
2,449,821	+		IAI47_11560	0.89	+1.1
2,449,821	+		IAI47_11560	0.89	-0.6
2,449,821	+		IAI47_11560	0.89	-0.5
2,449,822	-		IAI47_11560	0.89	+0.6
2,449,822	-		IAI47_11560	0.89	+0.1
2,449,822	-		IAI47_11560	0.89	+0.5
2,449,830	+		IAI47_11560	0.89	+0.5
2,449,830	+		IAI47_11560	0.89	+0.2
2,449,830	+		IAI47_11560	0.89	-0.1
2,449,831	-		IAI47_11560	0.89	-0.3
2,449,845	+		IAI47_11560	0.89	-1.7
2,449,845	+		IAI47_11560	0.89	+0.6
2,449,845	+		IAI47_11560	0.89	+2.5
2,449,846	-		IAI47_11560	0.89	+1.7
2,449,846	-		IAI47_11560	0.89	+1.9
2,449,868	+		IAI47_11560	0.90	-0.8
2,449,932	+				-0.7
2,449,947	+				-0.1
2,449,947	+				-1.0
2,449,947	+				+0.2
2,449,947	+				+0.8
2,449,947	+				-0.9
2,449,947	+				+0.8
2,449,947	+				+1.3
2,449,947	+				+0.1
2,449,947	+				+0.5
2,449,948	-				+1.2
2,449,948	-				-0.2
2,449,948	-				-0.1
2,449,948	-				-1.7
2,449,948	-				+2.5
2,449,948	-				+1.6
2,449,948	-				-1.3
2,449,948	-				+0.2
2,449,977	+				-0.4
2,449,978	-				+2.1
2,449,978	-				-0.2
2,450,021	-				-0.7
2,450,028	+				-0.6
2,450,029	-				-0.6
2,450,040	+				+0.7
2,450,041	-				-1.0
2,450,086	-				-0.9
2,450,086	-				-0.9
2,450,086	-				-0.3
2,450,088	+				-2.7
2,450,088	+				-0.9
2,450,088	+				-1.5
2,450,088	+				+0.5
2,450,088	+				+0.3
2,450,088	+				-1.5
2,450,088	+				-1.2
2,450,088	+				+0.7
2,450,088	+				+0.9
2,450,089	-				+1.9
2,450,089	-				-0.6
2,450,089	-				-0.2
2,450,089	-				+2.9
2,450,089	-				+0.1
2,450,089	-				-1.9
2,450,089	-				-0.7
2,450,089	-				-0.5
2,450,089	-				-0.9
2,450,089	-				-0.5
2,450,089	-				+2.5
2,450,093	+				+0.4
2,450,140	+				-0.3
2,450,140	+				+0.3
2,450,141	-				+0.1
2,450,141	-				-0.3
2,450,197	+				+1.0
2,450,197	+				+0.2
2,450,197	+				-0.0
2,450,197	+				-0.3
2,450,197	+				+0.7
2,450,198	-				+1.1
2,450,198	-				-0.5
2,450,198	-				+1.4
2,450,199	-				+0.3
2,450,302	-				-0.3
2,450,341	+				-1.1
2,450,341	+				-0.6
2,450,342	-				+1.1
2,450,342	-				-0.2
2,450,376	+				-1.0
2,450,376	+				-1.9
2,450,376	+				-1.3
2,450,376	+				+0.0
2,450,376	+				+0.4
2,450,376	+				+0.1
2,450,376	+				-0.5
2,450,377	-				+0.6
2,450,377	-				+0.0
2,450,377	-				-0.4
2,450,377	-				+1.1
2,450,377	-				-1.1
2,450,377	-				+0.3
2,450,377	-				+0.1
2,450,377	-				+0.5
2,450,377	-				-0.5
2,450,377	-				+0.4
2,450,474	+		IAI47_11565	0.12	-1.5
2,450,474	+		IAI47_11565	0.12	+0.9
2,450,474	+		IAI47_11565	0.12	+0.6
2,450,474	+		IAI47_11565	0.12	+2.1
2,450,475	-		IAI47_11565	0.12	-0.1
2,450,475	-		IAI47_11565	0.12	-0.4
2,450,475	-		IAI47_11565	0.12	-2.6
2,450,475	-		IAI47_11565	0.12	-0.6
2,450,511	+		IAI47_11565	0.21	+0.6
2,450,511	+		IAI47_11565	0.21	+0.7
2,450,512	-		IAI47_11565	0.21	+0.3
2,450,512	-		IAI47_11565	0.21	-1.9
2,450,544	+		IAI47_11565	0.29	+0.6
2,450,545	-		IAI47_11565	0.29	-1.2
2,450,554	+		IAI47_11565	0.31	+0.1
2,450,554	+		IAI47_11565	0.31	-0.1
2,450,554	+		IAI47_11565	0.31	-0.1
2,450,554	+		IAI47_11565	0.31	-0.1
2,450,554	+		IAI47_11565	0.31	+0.1
2,450,554	+		IAI47_11565	0.31	-1.0
2,450,554	+		IAI47_11565	0.31	+0.3
2,450,554	+		IAI47_11565	0.31	+0.0
2,450,555	-		IAI47_11565	0.31	+0.9
2,450,555	-		IAI47_11565	0.31	+0.9
2,450,555	-		IAI47_11565	0.31	+0.7
2,450,555	-		IAI47_11565	0.31	-0.7
2,450,555	-		IAI47_11565	0.31	+1.1
2,450,555	-		IAI47_11565	0.31	-2.5
2,450,555	-		IAI47_11565	0.31	-2.1
2,450,555	-		IAI47_11565	0.31	-0.2
2,450,555	-		IAI47_11565	0.31	+1.5
2,450,555	-		IAI47_11565	0.31	+0.4
2,450,555	-		IAI47_11565	0.31	-1.0
2,450,555	-		IAI47_11565	0.31	-1.5
2,450,555	-		IAI47_11565	0.31	-1.4
2,450,555	-		IAI47_11565	0.31	+0.3
2,450,555	-		IAI47_11565	0.31	-1.1
2,450,555	-		IAI47_11565	0.31	+1.2
2,450,555	-		IAI47_11565	0.31	-0.1
2,450,616	-		IAI47_11565	0.46	+0.1
2,450,616	-		IAI47_11565	0.46	-0.1
2,450,616	-		IAI47_11565	0.46	-0.7
2,450,616	-		IAI47_11565	0.46	+0.9
2,450,616	-		IAI47_11565	0.46	-3.1
2,450,616	-		IAI47_11565	0.46	-0.3
2,450,616	-		IAI47_11565	0.46	-0.9
2,450,616	-		IAI47_11565	0.46	-1.1
2,450,640	+		IAI47_11565	0.51	+1.7
2,450,640	+		IAI47_11565	0.51	-0.2
2,450,640	+		IAI47_11565	0.51	+0.9
2,450,641	-		IAI47_11565	0.52	-0.7
2,450,641	-		IAI47_11565	0.52	-0.4
2,450,641	-		IAI47_11565	0.52	+0.7
2,450,641	-		IAI47_11565	0.52	+1.2
2,450,641	-		IAI47_11565	0.52	-0.5
2,450,641	-		IAI47_11565	0.52	-0.8
2,450,641	-		IAI47_11565	0.52	-0.7
2,450,641	-		IAI47_11565	0.52	-0.7
2,450,641	-		IAI47_11565	0.52	+1.6
2,450,663	+		IAI47_11565	0.57	-0.0
2,450,664	-		IAI47_11565	0.57	-0.1
2,450,689	+		IAI47_11565	0.63	+1.3
2,450,689	+		IAI47_11565	0.63	-0.4
2,450,689	+		IAI47_11565	0.63	+0.5
2,450,689	+		IAI47_11565	0.63	-0.7
2,450,690	-		IAI47_11565	0.63	+1.1
2,450,690	-		IAI47_11565	0.63	-0.1
2,450,690	-		IAI47_11565	0.63	-2.3
2,450,690	-		IAI47_11565	0.63	+0.7
2,450,714	+		IAI47_11565	0.69	-0.8
2,450,714	+		IAI47_11565	0.69	-0.3
2,450,715	-		IAI47_11565	0.69	-0.1
2,450,715	-		IAI47_11565	0.69	-0.8
2,450,715	-		IAI47_11565	0.69	-0.5
2,450,736	+		IAI47_11565	0.74	+0.7
2,450,736	+		IAI47_11565	0.74	+0.2
2,450,736	+		IAI47_11565	0.74	-0.8
2,450,737	-		IAI47_11565	0.75	+0.9
2,450,737	-		IAI47_11565	0.75	+0.9
2,450,834	+				+0.4
2,450,844	+				-0.9
2,450,845	-				+0.9
2,450,845	-				+0.9
2,450,851	+				-0.3
2,450,851	+				-0.6
2,450,852	-				-1.5
2,450,863	+				+0.9
2,450,876	+				-1.5
2,450,876	+				-0.9
2,450,911	+				-0.3
2,450,912	-				-0.5
2,450,912	-				+0.9
2,450,933	-				+0.6
2,450,933	-				-0.7
2,450,935	+				+1.1
2,450,935	+				-0.0
2,450,936	-				-0.9
2,450,936	-				-1.8
2,450,938	+				-0.1
2,450,938	+				-0.6
2,450,939	-				-0.5
2,450,939	-				-0.7
2,450,939	-				-0.5
2,450,965	+				-0.5
2,450,966	-				-2.7
2,450,966	-				+0.0
2,450,966	-				+1.3
2,451,003	-				+0.1
2,451,004	+				+1.9
2,451,068	+		IAI47_11570	0.12	-1.7
2,451,068	+		IAI47_11570	0.12	-1.1
2,451,068	+		IAI47_11570	0.12	+0.8
2,451,069	-		IAI47_11570	0.12	-0.4
2,451,069	-		IAI47_11570	0.12	-1.3
2,451,069	-		IAI47_11570	0.12	+1.4
2,451,107	+		IAI47_11570	0.14	-0.6
2,451,107	+		IAI47_11570	0.14	+0.3
2,451,108	-		IAI47_11570	0.14	+0.2
2,451,108	-		IAI47_11570	0.14	+0.3
2,451,114	-		IAI47_11570	0.14	+1.0
2,451,131	+		IAI47_11570	0.15	+1.4
2,451,132	-		IAI47_11570	0.15	-1.0
2,451,132	-		IAI47_11570	0.15	-0.1
2,451,132	-		IAI47_11570	0.15	-0.5
2,451,139	+		IAI47_11570	0.15	+0.3
2,451,139	+		IAI47_11570	0.15	+1.5
2,451,139	+		IAI47_11570	0.15	-0.4
2,451,139	+		IAI47_11570	0.15	-0.1
2,451,140	-		IAI47_11570	0.15	-0.9
2,451,140	-		IAI47_11570	0.15	+0.9
2,451,140	-		IAI47_11570	0.15	-0.7
2,451,181	+		IAI47_11570	0.17	+3.0
2,451,181	+		IAI47_11570	0.17	+0.4
2,451,181	+		IAI47_11570	0.17	+1.5
2,451,182	-		IAI47_11570	0.18	+1.1
2,451,182	-		IAI47_11570	0.18	+0.0
2,451,189	+		IAI47_11570	0.18	+0.9
2,451,189	+		IAI47_11570	0.18	+0.6
2,451,189	+		IAI47_11570	0.18	-0.9
2,451,189	+		IAI47_11570	0.18	-0.9
2,451,190	-		IAI47_11570	0.18	+0.8
2,451,190	-		IAI47_11570	0.18	+0.0
2,451,190	-		IAI47_11570	0.18	+0.3
2,451,200	-		IAI47_11570	0.18	+0.3
2,451,200	-		IAI47_11570	0.18	+1.1
2,451,229	+		IAI47_11570	0.20	+1.4
2,451,229	+		IAI47_11570	0.20	+0.3
2,451,230	-		IAI47_11570	0.20	-2.3
2,451,230	-		IAI47_11570	0.20	+0.3
2,451,230	-		IAI47_11570	0.20	-1.2
2,451,230	-		IAI47_11570	0.20	-0.0
2,451,230	-		IAI47_11570	0.20	-0.4
2,451,230	-		IAI47_11570	0.20	-1.5
2,451,230	-		IAI47_11570	0.20	+0.6
2,451,230	-		IAI47_11570	0.20	-0.5
2,451,248	-		IAI47_11570	0.21	+0.2
2,451,256	+		IAI47_11570	0.21	-0.1
2,451,305	-		IAI47_11570	0.24	-0.0
2,451,418	+		IAI47_11570	0.30	-0.9
2,451,419	-		IAI47_11570	0.30	+0.9
2,451,420	+		IAI47_11570	0.30	+0.3
2,451,420	+		IAI47_11570	0.30	-1.1
2,451,420	+		IAI47_11570	0.30	-1.1
2,451,421	-		IAI47_11570	0.30	+0.3
2,451,421	-		IAI47_11570	0.30	+0.1
2,451,421	-		IAI47_11570	0.30	+0.9