Strain Fitness in Pantoea sp. MT58 around IAI47_09785

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
2,069,639	+		IAI47_09780	0.16	+0.3
2,069,639	+		IAI47_09780	0.16	-0.5
2,069,639	+		IAI47_09780	0.16	-1.1
2,069,639	+		IAI47_09780	0.16	+0.5
2,069,639	+		IAI47_09780	0.16	+1.6
2,069,640	-		IAI47_09780	0.17	+0.1
2,069,640	-		IAI47_09780	0.17	+0.6
2,069,640	-		IAI47_09780	0.17	-0.0
2,069,640	-		IAI47_09780	0.17	-0.9
2,069,640	-		IAI47_09780	0.17	-0.2
2,069,703	+		IAI47_09780	0.25	-2.7
2,069,932	+		IAI47_09780	0.57	-1.0
2,069,933	-		IAI47_09780	0.57	-1.1
2,069,999	+		IAI47_09780	0.67	-1.7
2,069,999	+		IAI47_09780	0.67	+0.1
2,069,999	+		IAI47_09780	0.67	-0.3
2,069,999	+		IAI47_09780	0.67	+0.4
2,069,999	+		IAI47_09780	0.67	-1.5
2,070,000	-		IAI47_09780	0.67	+0.5
2,070,000	-		IAI47_09780	0.67	+0.4
2,070,051	+		IAI47_09780	0.74	-0.7
2,070,051	+		IAI47_09780	0.74	-0.6
2,070,052	-		IAI47_09780	0.74	-1.0
2,070,052	-		IAI47_09780	0.74	-1.2
2,070,088	+		IAI47_09780	0.79	+0.0
2,070,088	+		IAI47_09780	0.79	+0.6
2,070,089	-		IAI47_09780	0.79	-0.4
2,070,089	-		IAI47_09780	0.79	-1.5
2,070,113	+		IAI47_09780	0.83	+0.0
2,070,114	-		IAI47_09780	0.83	+0.0
2,070,129	+		IAI47_09780	0.85	-0.6
2,070,130	-		IAI47_09780	0.85	+0.3
2,070,155	-		IAI47_09780	0.88	+0.9
2,070,155	-		IAI47_09780	0.88	-0.5
2,070,155	-		IAI47_09780	0.88	+0.3
2,070,270	+				-0.7
2,070,270	+				+0.1
2,070,271	-				-1.1
2,070,271	-				+1.1
2,070,272	+				-0.7
2,070,272	+				+0.4
2,070,272	+				-0.4
2,070,272	+				+3.2
2,070,272	+				-0.5
2,070,272	+				+0.6
2,070,273	-				+0.1
2,070,273	-				+1.2
2,070,273	-				+0.9
2,070,273	-				-0.7
2,070,273	-				-0.4
2,070,273	-				-0.7
2,070,273	-				-0.4
2,070,273	-				+0.1
2,070,281	+				+0.2
2,070,282	-				+1.0
2,070,282	-				+0.9
2,070,282	-				-2.0
2,070,282	-				-1.5
2,070,349	+				+1.3
2,070,349	+				+0.8
2,070,350	-				+1.3
2,070,383	+				+0.0
2,070,390	+				+0.7
2,070,391	-				+0.2
2,070,406	+				-1.0
2,070,406	+				-1.0
2,070,406	+				+0.1
2,070,407	-				+0.4
2,070,407	-				-0.3
2,070,407	-				-0.4
2,070,407	-				-2.1
2,070,407	-				-0.9
2,070,407	-				+0.2
2,070,407	-				-0.7
2,070,408	+				+0.1
2,070,408	+				+0.3
2,070,409	-				-1.1
2,070,438	+				-0.3
2,070,439	-				+0.1
2,070,445	+				+0.1
2,070,446	-				+2.0
2,070,446	-				-0.2
2,070,446	-				+0.2
2,070,446	-				-2.7
2,070,447	+				-0.3
2,070,447	+				-0.6
2,070,447	+				-0.3
2,070,447	+				+0.2
2,070,448	-				+1.6
2,070,448	-				+0.7
2,070,448	-				-0.4
2,070,448	-				+1.3
2,070,458	+				+1.7
2,070,458	+				-0.6
2,070,481	-				-0.4
2,070,490	+				-1.2
2,070,491	-				-2.0
2,070,602	+				+0.9
2,070,615	-				+0.0
2,070,629	+				+0.4
2,070,629	+				+0.4
2,070,629	+				+0.7
2,070,630	-				+0.3
2,070,676	+				+0.9
2,070,676	+				-1.3
2,070,676	+				-1.6
2,070,676	+				+1.2
2,070,676	+				-0.4
2,070,676	+				+1.1
2,070,676	+				-0.3
2,070,677	-				-0.5
2,070,677	-				+0.6
2,070,701	+				+0.3
2,070,701	+				-1.1
2,070,701	+				-0.7
2,070,701	+				-0.4
2,070,701	+				-0.1
2,070,731	+				-0.6
2,070,746	+				-0.9
2,070,747	-				+0.4
2,070,798	+		IAI47_09785	0.11	+1.2
2,070,798	+		IAI47_09785	0.11	-1.1
2,070,798	+		IAI47_09785	0.11	-0.3
2,070,798	+		IAI47_09785	0.11	+0.2
2,070,798	+		IAI47_09785	0.11	-0.7
2,070,798	+		IAI47_09785	0.11	+0.3
2,070,798	+		IAI47_09785	0.11	-0.4
2,070,799	-		IAI47_09785	0.12	-1.6
2,070,799	-		IAI47_09785	0.12	+0.0
2,070,799	-		IAI47_09785	0.12	-0.6
2,070,799	-		IAI47_09785	0.12	+0.9
2,070,823	+		IAI47_09785	0.13	-0.7
2,070,831	+		IAI47_09785	0.14	-0.6
2,070,832	-		IAI47_09785	0.14	-0.6
2,070,927	-		IAI47_09785	0.20	+1.1
2,070,927	-		IAI47_09785	0.20	+0.9
2,071,013	+		IAI47_09785	0.26	+0.5
2,071,013	+		IAI47_09785	0.26	+0.0
2,071,014	-		IAI47_09785	0.26	+1.9
2,071,015	+		IAI47_09785	0.26	+0.3
2,071,015	+		IAI47_09785	0.26	+2.7
2,071,017	+		IAI47_09785	0.26	-0.4
2,071,017	+		IAI47_09785	0.26	+0.0
2,071,017	+		IAI47_09785	0.26	+0.0
2,071,017	+		IAI47_09785	0.26	+0.3
2,071,017	+		IAI47_09785	0.26	-0.5
2,071,017	+		IAI47_09785	0.26	-0.1
2,071,017	+		IAI47_09785	0.26	-0.5
2,071,017	+		IAI47_09785	0.26	-0.6
2,071,017	+		IAI47_09785	0.26	-0.4
2,071,017	+		IAI47_09785	0.26	-1.1
2,071,018	-		IAI47_09785	0.26	-0.7
2,071,018	-		IAI47_09785	0.26	+0.3
2,071,018	-		IAI47_09785	0.26	-0.1
2,071,121	+		IAI47_09785	0.33	+0.7
2,071,121	+		IAI47_09785	0.33	-0.6
2,071,122	-		IAI47_09785	0.34	+0.6
2,071,122	-		IAI47_09785	0.34	+1.3
2,071,122	-		IAI47_09785	0.34	-0.4
2,071,146	-		IAI47_09785	0.35	+0.2
2,071,193	-		IAI47_09785	0.38	+0.3
2,071,285	+		IAI47_09785	0.45	-1.6
2,071,286	-		IAI47_09785	0.45	-0.1
2,071,433	+		IAI47_09785	0.55	-0.1
2,071,487	-		IAI47_09785	0.58	-0.0
2,071,611	+		IAI47_09785	0.67	+0.7
2,071,611	+		IAI47_09785	0.67	-0.6
2,071,612	-		IAI47_09785	0.67	-0.1
2,071,612	-		IAI47_09785	0.67	-1.0
2,071,612	-		IAI47_09785	0.67	-1.6
2,071,666	+		IAI47_09785	0.71	+0.3
2,071,666	+		IAI47_09785	0.71	-0.2
2,071,666	+		IAI47_09785	0.71	-0.6
2,071,667	-		IAI47_09785	0.71	+0.2
2,071,667	-		IAI47_09785	0.71	-0.1
2,071,675	+		IAI47_09785	0.71	-0.5
2,071,675	+		IAI47_09785	0.71	+0.0
2,071,695	+		IAI47_09785	0.73	+0.4
2,071,696	-		IAI47_09785	0.73	-0.6
2,071,696	-		IAI47_09785	0.73	+0.7
2,071,785	+		IAI47_09785	0.79	+0.6
2,071,870	+		IAI47_09785	0.85	-0.3
2,071,906	+		IAI47_09785	0.87	+0.1
2,071,906	+		IAI47_09785	0.87	+0.6
2,071,928	+		IAI47_09785	0.88	+0.1
2,071,929	-		IAI47_09785	0.89	+3.0
2,071,929	-		IAI47_09785	0.89	+0.1
2,071,929	-		IAI47_09785	0.89	-0.2
2,072,011	+				+2.3
2,072,011	+				-0.1
2,072,012	-				-1.0
2,072,094	+				+0.0
2,072,094	+				-0.6
2,072,095	-				+0.9
2,072,095	-				-0.7
2,072,138	-				+0.1
2,072,138	-				-0.6
2,072,210	+		IAI47_09790	0.25	-0.5
2,072,211	-		IAI47_09790	0.25	+0.6
2,072,212	+		IAI47_09790	0.26	+0.4
2,072,213	-		IAI47_09790	0.26	+0.3
2,072,213	-		IAI47_09790	0.26	+0.9
2,072,213	-		IAI47_09790	0.26	-0.3
2,072,213	-		IAI47_09790	0.26	-0.5
2,072,409	+				-0.4
2,072,413	-				-0.1
2,072,424	+				-0.6
2,072,425	-				+1.1
2,072,425	-				+0.5
2,072,425	-				-0.5
2,072,444	+				+0.5
2,072,444	+				-1.3
2,072,444	+				+0.9
2,072,444	+				-0.5
2,072,444	+				+0.6
2,072,444	+				-0.7
2,072,444	+				-0.3
2,072,445	-				-0.4
2,072,445	-				-1.0
2,072,445	-				+0.2
2,072,445	-				-1.7
2,072,445	-				-0.6
2,072,445	-				-0.6
2,072,445	-				+0.9
2,072,445	-				-0.4
2,072,450	-				-1.2
2,072,450	-				-0.3
2,072,450	-				-0.4
2,072,463	+				+0.7
2,072,463	+				+0.3
2,072,463	+				+0.3
2,072,463	+				+1.4
2,072,463	+				+0.8
2,072,464	-				-0.2
2,072,464	-				+1.2
2,072,464	-				+0.3
2,072,464	-				-0.2
2,072,466	+				+0.3
2,072,466	+				-1.0
2,072,466	+				-0.4
2,072,466	+				+0.5
2,072,466	+				+1.3
2,072,466	+				+0.0
2,072,466	+				-0.3
2,072,467	-				-0.2
2,072,467	-				+0.1
2,072,467	-				+1.1
2,072,467	-				+1.2
2,072,467	-				-0.2
2,072,468	+				-0.0
2,072,468	+				-0.6
2,072,468	+				-0.0
2,072,468	+				-0.0
2,072,469	-				-0.8
2,072,469	-				+0.4
2,072,469	-				-1.0
2,072,469	-				-3.0
2,072,469	-				-0.5
2,072,469	-				+0.6
2,072,469	-				+0.4
2,072,539	+		IAI47_09795	0.19	-0.5
2,072,540	-		IAI47_09795	0.19	-0.3
2,072,540	-		IAI47_09795	0.19	-0.4
2,072,552	+		IAI47_09795	0.23	+0.1
2,072,553	-		IAI47_09795	0.23	-1.0
2,072,553	-		IAI47_09795	0.23	+0.3
2,072,584	+		IAI47_09795	0.33	-2.3
2,072,585	-		IAI47_09795	0.33	+0.3
2,072,585	-		IAI47_09795	0.33	+0.3
2,072,585	-		IAI47_09795	0.33	-0.6
2,072,601	-		IAI47_09795	0.38	-2.2
2,072,637	-		IAI47_09795	0.49	-0.3
2,072,637	-		IAI47_09795	0.49	-1.0
2,072,669	+		IAI47_09795	0.59	+1.8
2,072,669	+		IAI47_09795	0.59	-0.4
2,072,670	-		IAI47_09795	0.59	-0.2
2,072,670	-		IAI47_09795	0.59	-0.3
2,072,670	-		IAI47_09795	0.59	-1.2
2,072,670	-		IAI47_09795	0.59	-0.5
2,072,807	+				-0.4
2,072,808	-				+1.3
2,072,814	+				-2.0
2,072,814	+				+0.1
2,072,815	-				-0.5
2,072,815	-				+0.4
2,072,818	+				-1.2
2,072,818	+				-0.2
2,072,819	-				+0.1
2,072,865	+				-0.2
2,072,866	-				-1.5
2,072,897	+				-0.6
2,072,897	+				-1.0
2,072,897	+				-0.5
2,072,934	-				+0.4
2,072,978	+				-2.3
2,073,005	-				-1.2
2,073,005	-				-0.1
2,073,007	+				-0.7
2,073,007	+				+0.3
2,073,007	+				-0.6
2,073,007	+				+0.4
2,073,008	-				-0.2
2,073,008	-				+0.2
2,073,009	+				+1.2
2,073,009	+				-0.5
2,073,009	+				+0.6
2,073,010	-				-0.2
2,073,010	-				-0.2
2,073,053	-				-0.7
2,073,068	+				+0.4
2,073,068	+				+1.7
2,073,069	-				+0.5
2,073,069	-				-0.5
2,073,080	+				+0.8
2,073,080	+				+0.1
2,073,081	-				+0.6
2,073,081	-				-0.5