Strain Fitness in Pantoea sp. MT58 around IAI47_06695

Experiment: Ying_all64 rep A; time point 2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_all64 rep A; time point 2
1,393,996	+				-0.5
1,393,996	+				-0.5
1,393,996	+				+0.7
1,393,996	+				-0.7
1,393,997	-				-0.5
1,393,997	-				-0.6
1,393,999	+				-0.2
1,393,999	+				+1.1
1,393,999	+				+0.6
1,394,000	-				+0.9
1,394,000	-				-0.4
1,394,078	+		IAI47_06690	0.17	+1.1
1,394,079	-		IAI47_06690	0.17	+0.2
1,394,079	-		IAI47_06690	0.17	+1.9
1,394,121	-		IAI47_06690	0.21	+0.6
1,394,121	-		IAI47_06690	0.21	-0.7
1,394,121	-		IAI47_06690	0.21	+0.2
1,394,145	+		IAI47_06690	0.23	-0.8
1,394,146	-		IAI47_06690	0.23	+1.5
1,394,146	-		IAI47_06690	0.23	+1.1
1,394,207	+		IAI47_06690	0.29	-1.1
1,394,207	+		IAI47_06690	0.29	+3.3
1,394,208	-		IAI47_06690	0.29	-0.8
1,394,238	-				-0.7
1,394,300	+		IAI47_06690	0.38	-0.8
1,394,300	+		IAI47_06690	0.38	+0.1
1,394,301	-		IAI47_06690	0.38	-1.6
1,394,326	+		IAI47_06690	0.40	-1.3
1,394,444	+		IAI47_06690	0.51	-0.7
1,394,444	+		IAI47_06690	0.51	+1.4
1,394,444	+		IAI47_06690	0.51	-0.3
1,394,444	+		IAI47_06690	0.51	+0.9
1,394,445	-		IAI47_06690	0.51	+0.3
1,394,493	-		IAI47_06690	0.55	-0.4
1,394,493	-		IAI47_06690	0.55	-2.0
1,394,493	-		IAI47_06690	0.55	-0.4
1,394,493	-		IAI47_06690	0.55	-0.4
1,394,493	-		IAI47_06690	0.55	-0.7
1,394,705	+		IAI47_06690	0.75	-0.4
1,394,706	-		IAI47_06690	0.75	-0.7
1,394,808	+		IAI47_06690	0.85	+1.7
1,394,891	+				+0.2
1,394,892	-				-0.1
1,394,892	-				-0.7
1,394,892	-				-0.8
1,394,904	-				+0.9
1,394,904	-				-0.9
1,394,942	+				-0.1
1,394,943	-				-0.9
1,394,943	-				+1.4
1,394,945	+				+2.8
1,394,946	-				-2.4
1,394,946	-				-0.9
1,394,946	-				-1.1
1,394,968	+				-0.6
1,394,968	+				+0.1
1,394,968	+				+0.6
1,394,968	+				-1.0
1,394,968	+				+0.5
1,394,968	+				+1.2
1,394,969	-				+2.3
1,394,969	-				+0.1
1,394,969	-				-0.3
1,394,969	-				-0.0
1,394,969	-				+0.3
1,394,969	-				+2.2
1,394,970	+				-0.7
1,394,970	+				+0.4
1,394,970	+				+0.4
1,394,970	+				-1.0
1,394,971	-				+0.9
1,394,971	-				-1.7
1,394,991	+				-0.4
1,394,992	-				+0.3
1,395,022	+				-1.7
1,395,022	+				-1.4
1,395,022	+				-0.1
1,395,022	+				-2.2
1,395,022	+				-0.6
1,395,023	-				+0.0
1,395,070	+		IAI47_06695	0.12	-0.1
1,395,101	-		IAI47_06695	0.16	+0.3
1,395,136	+		IAI47_06695	0.21	+0.6
1,395,137	-		IAI47_06695	0.21	+1.5
1,395,161	-		IAI47_06695	0.24	-0.1
1,395,210	+		IAI47_06695	0.30	+1.6
1,395,210	+		IAI47_06695	0.30	-0.1
1,395,211	-		IAI47_06695	0.30	-0.5
1,395,211	-		IAI47_06695	0.30	-0.1
1,395,211	-		IAI47_06695	0.30	-0.9
1,395,211	-		IAI47_06695	0.30	+0.9
1,395,211	-		IAI47_06695	0.30	-0.8
1,395,215	+		IAI47_06695	0.31	-1.1
1,395,215	+		IAI47_06695	0.31	-0.1
1,395,268	+		IAI47_06695	0.38	+0.9
1,395,269	-		IAI47_06695	0.38	-1.7
1,395,427	-		IAI47_06695	0.58	-1.7
1,395,486	-		IAI47_06695	0.65	-0.1
1,395,486	-		IAI47_06695	0.65	-0.9
1,395,604	+		IAI47_06695	0.80	-0.4
1,395,604	+		IAI47_06695	0.80	+0.0
1,395,604	+		IAI47_06695	0.80	-1.8
1,395,604	+		IAI47_06695	0.80	-0.9
1,395,604	+		IAI47_06695	0.80	+0.1
1,395,605	-		IAI47_06695	0.80	+1.3
1,395,605	-		IAI47_06695	0.80	+1.0
1,395,650	-		IAI47_06695	0.86	+0.3
1,395,650	-		IAI47_06695	0.86	-0.3
1,395,650	-		IAI47_06695	0.86	-1.3
1,395,658	+		IAI47_06695	0.87	+0.2
1,395,674	+		IAI47_06695	0.89	+0.9
1,395,691	+				+1.1
1,395,691	+				+1.9
1,395,753	+				+0.1
1,395,753	+				+0.0
1,395,754	-				+0.3
1,395,770	+				+1.8
1,395,771	-				-0.2
1,395,790	+				+0.5
1,395,860	+				+0.3
1,395,860	+				-0.2
1,395,861	-				+0.1
1,395,888	+				-0.6
1,395,889	-				-0.6
1,395,901	+				-2.1
1,395,902	-				+1.6
1,395,906	-				+0.2
1,395,960	+				-0.4
1,395,960	+				-0.0
1,395,960	+				-1.1
1,395,968	+				-0.8
1,395,968	+				-0.4
1,395,968	+				-0.1
1,395,968	+				+0.6
1,395,968	+				-1.3
1,395,968	+				-0.9
1,395,968	+				-0.1
1,395,968	+				+0.5
1,395,968	+				-2.1
1,395,968	+				-0.5
1,395,968	+				-0.3
1,395,969	-				+0.1
1,395,969	-				-0.1
1,395,969	-				-1.0
1,395,969	-				-1.2
1,395,969	-				+0.4
1,395,969	-				-0.3
1,395,972	+				+0.1
1,395,972	+				-1.2
1,395,972	+				+0.8
1,395,972	+				+0.2
1,395,972	+				-0.9
1,395,972	+				-0.1
1,395,972	+				+0.9
1,395,972	+				+1.5
1,395,972	+				+0.2
1,395,972	+				-1.7
1,395,972	+				+1.8
1,395,972	+				-0.5
1,395,972	+				-0.5
1,395,972	+				+0.7
1,395,972	+				-0.3
1,395,973	-				+0.4
1,395,973	-				-0.9
1,395,973	-				-0.8
1,395,973	-				-0.6
1,395,973	-				+0.3
1,395,973	-				+0.0
1,395,973	-				+0.2
1,395,973	-				-0.3
1,395,973	-				-0.8
1,395,973	-				-1.0
1,395,980	+				-1.4
1,395,993	+		IAI47_06700	0.11	+0.5
1,395,993	+		IAI47_06700	0.11	-1.7
1,396,037	-		IAI47_06700	0.16	+0.2
1,396,142	+		IAI47_06700	0.28	+1.2
1,396,142	+		IAI47_06700	0.28	-0.7
1,396,142	+		IAI47_06700	0.28	-0.2
1,396,143	-		IAI47_06700	0.28	+1.1
1,396,175	+		IAI47_06700	0.32	+0.6
1,396,176	-		IAI47_06700	0.32	+0.3
1,396,176	-		IAI47_06700	0.32	-0.1
1,396,176	-		IAI47_06700	0.32	+0.2
1,396,176	-		IAI47_06700	0.32	-0.2
1,396,299	+		IAI47_06700	0.47	-1.1
1,396,300	-		IAI47_06700	0.47	-1.0
1,396,300	-		IAI47_06700	0.47	-0.2
1,396,342	-		IAI47_06700	0.52	-0.6
1,396,361	-		IAI47_06700	0.54	+0.0
1,396,361	-		IAI47_06700	0.54	+1.9
1,396,361	-		IAI47_06700	0.54	+0.4
1,396,361	-		IAI47_06700	0.54	-1.4
1,396,376	+		IAI47_06700	0.56	-0.2
1,396,377	-		IAI47_06700	0.56	-1.0
1,396,427	+		IAI47_06700	0.62	-0.4
1,396,428	-		IAI47_06700	0.62	+0.5
1,396,454	+		IAI47_06700	0.65	+0.1
1,396,455	-		IAI47_06700	0.65	-1.7
1,396,455	-		IAI47_06700	0.65	-0.2
1,396,455	-		IAI47_06700	0.65	+0.5
1,396,503	+		IAI47_06700	0.71	+0.4
1,396,504	-		IAI47_06700	0.71	+0.9
1,396,504	-		IAI47_06700	0.71	+0.9
1,396,637	+		IAI47_06700	0.87	-0.1
1,396,637	+		IAI47_06700	0.87	+1.3
1,396,637	+		IAI47_06700	0.87	-0.4
1,396,637	+		IAI47_06700	0.87	-0.2
1,396,637	+		IAI47_06700	0.87	-1.1
1,396,637	+		IAI47_06700	0.87	+0.7
1,396,637	+		IAI47_06700	0.87	+0.3
1,396,638	-		IAI47_06700	0.87	-1.0
1,396,638	-		IAI47_06700	0.87	+1.3
1,396,638	-		IAI47_06700	0.87	+0.3
1,396,638	-		IAI47_06700	0.87	+0.7
1,396,644	+		IAI47_06700	0.88	+0.4
1,396,644	+		IAI47_06700	0.88	+0.3
1,396,644	+		IAI47_06700	0.88	-0.5
1,396,644	+		IAI47_06700	0.88	-0.1
1,396,644	+		IAI47_06700	0.88	-1.1
1,396,645	-		IAI47_06700	0.88	+0.6
1,396,710	+				+0.9
1,396,711	-				-0.0
1,396,711	-				+0.2
1,396,726	+				+0.3
1,396,726	+				+0.1
1,396,726	+				-1.7
1,396,727	-				+0.9
1,396,727	-				+0.9
1,396,727	-				-1.1
1,396,760	+				+0.8
1,396,760	+				-0.7