Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_04240 and IAI47_04245 are separated by 304 nucleotides IAI47_04245 and IAI47_04250 are separated by 295 nucleotides
IAI47_04240: IAI47_04240 - DNA mismatch repair protein MutS, at 889,409 to 891,970
_04240
IAI47_04245: IAI47_04245 - two-component system response regulator NarL, at 892,275 to 892,943
_04245
IAI47_04250: IAI47_04250 - NarK family nitrate/nitrite MFS transporter, at 893,239 to 894,630
_04250
Position (kb) 892
893 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 891.427 kb on - strand, within IAI47_04240 at 891.427 kb on - strand, within IAI47_04240 at 891.531 kb on + strand, within IAI47_04240 at 891.662 kb on + strand, within IAI47_04240 at 891.662 kb on + strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.663 kb on - strand, within IAI47_04240 at 891.678 kb on - strand, within IAI47_04240 at 891.678 kb on - strand, within IAI47_04240 at 891.678 kb on - strand, within IAI47_04240 at 891.678 kb on - strand, within IAI47_04240 at 891.730 kb on - strand at 891.730 kb on - strand at 891.747 kb on + strand at 891.747 kb on + strand at 891.747 kb on + strand at 891.747 kb on + strand at 891.843 kb on + strand at 891.843 kb on + strand at 891.843 kb on + strand at 891.855 kb on + strand at 891.855 kb on + strand at 891.856 kb on - strand at 891.856 kb on - strand at 891.868 kb on + strand at 891.869 kb on - strand at 891.873 kb on + strand at 891.874 kb on - strand at 891.915 kb on + strand at 891.915 kb on + strand at 891.915 kb on + strand at 891.916 kb on - strand at 891.916 kb on - strand at 891.970 kb on + strand at 891.971 kb on - strand at 891.978 kb on + strand at 891.978 kb on + strand at 891.979 kb on - strand at 891.979 kb on - strand at 891.979 kb on - strand at 891.989 kb on + strand at 891.989 kb on + strand at 891.989 kb on + strand at 891.990 kb on - strand at 892.062 kb on + strand at 892.070 kb on - strand at 892.070 kb on - strand at 892.081 kb on + strand at 892.082 kb on - strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.094 kb on + strand at 892.117 kb on + strand at 892.118 kb on - strand at 892.118 kb on - strand at 892.118 kb on - strand at 892.119 kb on + strand at 892.119 kb on + strand at 892.119 kb on + strand at 892.120 kb on - strand at 892.120 kb on - strand at 892.325 kb on + strand at 892.325 kb on + strand at 892.325 kb on + strand at 892.325 kb on + strand at 892.326 kb on - strand at 892.326 kb on - strand at 892.326 kb on - strand at 892.326 kb on - strand at 892.326 kb on - strand at 892.348 kb on + strand, within IAI47_04245 at 892.348 kb on + strand, within IAI47_04245 at 892.348 kb on + strand, within IAI47_04245 at 892.348 kb on + strand, within IAI47_04245 at 892.349 kb on - strand, within IAI47_04245 at 892.370 kb on + strand, within IAI47_04245 at 892.370 kb on + strand, within IAI47_04245 at 892.466 kb on + strand, within IAI47_04245 at 892.467 kb on - strand, within IAI47_04245 at 892.467 kb on - strand, within IAI47_04245 at 892.467 kb on - strand, within IAI47_04245 at 892.595 kb on + strand, within IAI47_04245 at 892.595 kb on + strand, within IAI47_04245 at 892.596 kb on - strand, within IAI47_04245 at 892.596 kb on - strand, within IAI47_04245 at 892.596 kb on - strand, within IAI47_04245 at 892.596 kb on - strand, within IAI47_04245 at 892.609 kb on + strand, within IAI47_04245 at 892.609 kb on + strand, within IAI47_04245 at 892.610 kb on - strand, within IAI47_04245 at 892.610 kb on - strand, within IAI47_04245 at 892.610 kb on - strand, within IAI47_04245 at 892.610 kb on - strand, within IAI47_04245 at 892.655 kb on + strand, within IAI47_04245 at 892.655 kb on + strand, within IAI47_04245 at 892.656 kb on - strand, within IAI47_04245 at 892.656 kb on - strand, within IAI47_04245 at 892.671 kb on + strand, within IAI47_04245 at 892.671 kb on + strand, within IAI47_04245 at 892.672 kb on - strand, within IAI47_04245 at 892.672 kb on - strand, within IAI47_04245 at 892.718 kb on + strand, within IAI47_04245 at 892.718 kb on + strand, within IAI47_04245 at 892.719 kb on - strand, within IAI47_04245 at 892.742 kb on + strand, within IAI47_04245 at 892.742 kb on + strand, within IAI47_04245 at 892.743 kb on - strand, within IAI47_04245 at 892.743 kb on - strand, within IAI47_04245 at 892.743 kb on - strand, within IAI47_04245 at 892.743 kb on - strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.808 kb on + strand, within IAI47_04245 at 892.809 kb on - strand, within IAI47_04245 at 892.809 kb on - strand, within IAI47_04245 at 892.809 kb on - strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.859 kb on + strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.860 kb on - strand, within IAI47_04245 at 892.868 kb on + strand, within IAI47_04245 at 892.869 kb on - strand, within IAI47_04245 at 892.869 kb on - strand, within IAI47_04245 at 892.896 kb on + strand at 892.897 kb on - strand at 892.905 kb on - strand at 892.923 kb on + strand at 892.923 kb on + strand at 892.924 kb on - strand at 892.924 kb on - strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.973 kb on + strand at 892.974 kb on - strand at 892.974 kb on - strand at 892.974 kb on - strand at 892.978 kb on + strand at 892.998 kb on + strand at 892.998 kb on + strand at 892.998 kb on + strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 892.999 kb on - strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.000 kb on + strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.001 kb on - strand at 893.002 kb on + strand at 893.003 kb on - strand at 893.003 kb on - strand at 893.003 kb on - strand at 893.016 kb on + strand at 893.017 kb on - strand at 893.017 kb on - strand at 893.017 kb on - strand at 893.024 kb on + strand at 893.085 kb on + strand at 893.085 kb on + strand at 893.085 kb on + strand at 893.085 kb on + strand at 893.086 kb on - strand at 893.094 kb on + strand at 893.094 kb on + strand at 893.096 kb on + strand at 893.097 kb on - strand at 893.097 kb on - strand at 893.097 kb on - strand at 893.097 kb on - strand at 893.097 kb on - strand at 893.108 kb on + strand at 893.108 kb on + strand at 893.108 kb on + strand at 893.109 kb on - strand at 893.109 kb on - strand at 893.113 kb on - strand at 893.116 kb on + strand at 893.116 kb on + strand at 893.117 kb on - strand at 893.117 kb on - strand at 893.117 kb on - strand at 893.150 kb on - strand at 893.150 kb on - strand at 893.150 kb on - strand at 893.172 kb on + strand at 893.172 kb on + strand at 893.172 kb on + strand at 893.172 kb on + strand at 893.173 kb on - strand at 893.173 kb on - strand at 893.173 kb on - strand at 893.197 kb on - strand at 893.205 kb on + strand at 893.206 kb on - strand at 893.206 kb on - strand at 893.215 kb on + strand at 893.215 kb on + strand at 893.216 kb on - strand at 893.216 kb on - strand at 893.216 kb on - strand at 893.238 kb on + strand at 893.238 kb on + strand at 893.239 kb on - strand at 893.282 kb on + strand at 893.282 kb on + strand at 893.282 kb on + strand at 893.331 kb on + strand at 893.332 kb on - strand at 893.430 kb on + strand, within IAI47_04250 at 893.430 kb on + strand, within IAI47_04250 at 893.430 kb on + strand, within IAI47_04250 at 893.430 kb on + strand, within IAI47_04250 at 893.431 kb on - strand, within IAI47_04250 at 893.431 kb on - strand, within IAI47_04250 at 893.442 kb on + strand, within IAI47_04250 at 893.442 kb on + strand, within IAI47_04250 at 893.469 kb on - strand, within IAI47_04250 at 893.469 kb on - strand, within IAI47_04250 at 893.515 kb on + strand, within IAI47_04250 at 893.515 kb on + strand, within IAI47_04250 at 893.515 kb on + strand, within IAI47_04250 at 893.516 kb on - strand, within IAI47_04250 at 893.516 kb on - strand, within IAI47_04250 at 893.516 kb on - strand, within IAI47_04250 at 893.526 kb on + strand, within IAI47_04250 at 893.526 kb on + strand, within IAI47_04250 at 893.527 kb on - strand, within IAI47_04250 at 893.527 kb on - strand, within IAI47_04250 at 893.609 kb on + strand, within IAI47_04250 at 893.609 kb on + strand, within IAI47_04250 at 893.610 kb on - strand, within IAI47_04250 at 893.640 kb on + strand, within IAI47_04250 at 893.640 kb on + strand, within IAI47_04250 at 893.640 kb on + strand, within IAI47_04250 at 893.641 kb on - strand, within IAI47_04250 at 893.641 kb on - strand, within IAI47_04250 at 893.676 kb on + strand, within IAI47_04250 at 893.676 kb on + strand, within IAI47_04250 at 893.676 kb on + strand, within IAI47_04250 at 893.676 kb on + strand, within IAI47_04250 at 893.677 kb on - strand, within IAI47_04250 at 893.677 kb on - strand, within IAI47_04250 at 893.677 kb on - strand, within IAI47_04250 at 893.677 kb on - strand, within IAI47_04250 at 893.835 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.844 kb on + strand, within IAI47_04250 at 893.845 kb on - strand, within IAI47_04250 at 893.845 kb on - strand, within IAI47_04250 at 893.891 kb on + strand, within IAI47_04250
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 891,427 - IAI47_04240 0.79 -0.9 891,427 - IAI47_04240 0.79 -1.4 891,531 + IAI47_04240 0.83 -0.4 891,662 + IAI47_04240 0.88 +0.8 891,662 + IAI47_04240 0.88 +1.7 891,663 - IAI47_04240 0.88 +0.6 891,663 - IAI47_04240 0.88 +2.3 891,663 - IAI47_04240 0.88 +1.8 891,663 - IAI47_04240 0.88 +0.5 891,663 - IAI47_04240 0.88 -0.1 891,678 - IAI47_04240 0.89 -1.2 891,678 - IAI47_04240 0.89 -0.2 891,678 - IAI47_04240 0.89 -1.1 891,678 - IAI47_04240 0.89 -1.1 891,730 - +0.7 891,730 - -0.1 891,747 + -0.6 891,747 + -0.3 891,747 + -0.6 891,747 + +0.3 891,843 + +1.9 891,843 + +1.4 891,843 + +0.5 891,855 + +0.9 891,855 + -0.4 891,856 - +0.2 891,856 - -0.2 891,868 + -0.9 891,869 - -0.2 891,873 + +0.3 891,874 - +1.5 891,915 + -0.1 891,915 + +0.1 891,915 + +0.9 891,916 - -0.2 891,916 - -1.3 891,970 + +0.5 891,971 - -0.5 891,978 + +0.9 891,978 + +0.2 891,979 - +1.1 891,979 - -0.9 891,979 - +1.2 891,989 + +1.3 891,989 + +0.4 891,989 + +0.8 891,990 - +1.7 892,062 + -0.7 892,070 - +0.9 892,070 - +0.2 892,081 + -0.4 892,082 - -0.5 892,094 + -0.9 892,094 + -1.6 892,094 + -0.2 892,094 + -1.4 892,117 + -0.7 892,118 - +1.9 892,118 - -0.4 892,118 - -0.4 892,119 + +0.3 892,119 + +0.8 892,119 + -1.4 892,120 - -0.6 892,120 - -1.9 892,325 + +1.9 892,325 + -0.3 892,325 + -0.8 892,325 + +1.3 892,326 - +0.1 892,326 - -0.1 892,326 - -0.7 892,326 - -0.1 892,326 - +1.5 892,348 + IAI47_04245 0.11 +0.5 892,348 + IAI47_04245 0.11 -0.2 892,348 + IAI47_04245 0.11 -1.1 892,348 + IAI47_04245 0.11 -1.4 892,349 - IAI47_04245 0.11 +0.5 892,370 + IAI47_04245 0.14 +0.9 892,370 + IAI47_04245 0.14 +0.5 892,466 + IAI47_04245 0.29 +0.9 892,467 - IAI47_04245 0.29 -0.2 892,467 - IAI47_04245 0.29 -0.5 892,467 - IAI47_04245 0.29 -0.7 892,595 + IAI47_04245 0.48 +0.2 892,595 + IAI47_04245 0.48 +0.7 892,596 - IAI47_04245 0.48 -0.4 892,596 - IAI47_04245 0.48 +1.2 892,596 - IAI47_04245 0.48 -1.1 892,596 - IAI47_04245 0.48 -0.1 892,609 + IAI47_04245 0.50 +0.9 892,609 + IAI47_04245 0.50 +1.8 892,610 - IAI47_04245 0.50 +0.1 892,610 - IAI47_04245 0.50 -1.3 892,610 - IAI47_04245 0.50 -1.5 892,610 - IAI47_04245 0.50 +0.1 892,655 + IAI47_04245 0.57 -0.6 892,655 + IAI47_04245 0.57 +0.9 892,656 - IAI47_04245 0.57 +1.9 892,656 - IAI47_04245 0.57 +0.1 892,671 + IAI47_04245 0.59 -0.5 892,671 + IAI47_04245 0.59 +0.5 892,672 - IAI47_04245 0.59 +1.9 892,672 - IAI47_04245 0.59 +0.2 892,718 + IAI47_04245 0.66 +0.5 892,718 + IAI47_04245 0.66 +0.1 892,719 - IAI47_04245 0.66 -1.4 892,742 + IAI47_04245 0.70 -0.1 892,742 + IAI47_04245 0.70 -2.1 892,743 - IAI47_04245 0.70 -0.1 892,743 - IAI47_04245 0.70 -0.3 892,743 - IAI47_04245 0.70 -0.6 892,743 - IAI47_04245 0.70 +3.3 892,808 + IAI47_04245 0.80 +0.1 892,808 + IAI47_04245 0.80 -0.5 892,808 + IAI47_04245 0.80 -1.3 892,808 + IAI47_04245 0.80 +0.5 892,808 + IAI47_04245 0.80 -1.4 892,809 - IAI47_04245 0.80 -0.2 892,809 - IAI47_04245 0.80 +0.1 892,809 - IAI47_04245 0.80 -0.8 892,859 + IAI47_04245 0.87 -0.5 892,859 + IAI47_04245 0.87 +0.2 892,859 + IAI47_04245 0.87 -1.1 892,859 + IAI47_04245 0.87 +0.6 892,859 + IAI47_04245 0.87 +1.5 892,860 - IAI47_04245 0.87 +1.4 892,860 - IAI47_04245 0.87 -0.8 892,860 - IAI47_04245 0.87 -1.1 892,860 - IAI47_04245 0.87 +0.2 892,860 - IAI47_04245 0.87 -1.2 892,860 - IAI47_04245 0.87 +1.5 892,868 + IAI47_04245 0.89 +0.9 892,869 - IAI47_04245 0.89 +0.5 892,869 - IAI47_04245 0.89 -0.1 892,896 + -0.6 892,897 - -0.1 892,905 - -0.6 892,923 + +0.7 892,923 + -1.9 892,924 - -0.1 892,924 - +1.7 892,973 + -0.1 892,973 + +0.8 892,973 + +0.5 892,973 + -0.9 892,973 + +0.3 892,973 + +0.2 892,973 + +0.1 892,974 - +0.7 892,974 - +0.2 892,974 - +0.0 892,978 + -0.6 892,998 + -0.3 892,998 + +0.1 892,998 + +1.8 892,999 - +0.6 892,999 - -1.9 892,999 - +0.1 892,999 - +0.6 892,999 - +1.9 892,999 - +0.9 892,999 - -1.4 892,999 - -1.1 893,000 + -1.4 893,000 + -0.2 893,000 + -0.6 893,000 + +0.9 893,000 + -0.4 893,000 + -0.1 893,000 + -0.9 893,000 + -0.4 893,001 - +0.1 893,001 - +0.4 893,001 - +2.2 893,001 - +2.0 893,001 - +0.6 893,001 - +0.4 893,001 - -1.9 893,002 + -1.4 893,003 - +0.1 893,003 - +1.0 893,003 - -0.8 893,016 + +1.7 893,017 - -0.6 893,017 - -0.1 893,017 - +0.9 893,024 + +0.9 893,085 + +0.6 893,085 + +1.6 893,085 + +1.4 893,085 + -0.2 893,086 - +0.1 893,094 + +0.4 893,094 + -1.1 893,096 + +0.9 893,097 - +0.1 893,097 - +0.2 893,097 - +1.1 893,097 - +0.0 893,097 - +0.2 893,108 + -0.3 893,108 + +0.7 893,108 + +0.8 893,109 - -0.1 893,109 - +0.8 893,113 - -1.1 893,116 + -0.1 893,116 + +0.7 893,117 - +1.8 893,117 - -1.1 893,117 - -0.5 893,150 - +0.0 893,150 - +0.6 893,150 - +0.8 893,172 + -0.5 893,172 + -2.4 893,172 + +0.6 893,172 + -0.6 893,173 - +0.2 893,173 - +0.0 893,173 - +0.2 893,197 - +0.1 893,205 + +0.2 893,206 - -0.7 893,206 - +0.5 893,215 + -0.3 893,215 + +0.7 893,216 - +0.9 893,216 - -2.2 893,216 - -0.6 893,238 + +1.1 893,238 + +0.9 893,239 - -0.6 893,282 + -0.6 893,282 + +0.8 893,282 + -0.6 893,331 + -0.5 893,332 - -1.2 893,430 + IAI47_04250 0.14 -0.3 893,430 + IAI47_04250 0.14 -0.4 893,430 + IAI47_04250 0.14 +1.4 893,430 + IAI47_04250 0.14 +0.7 893,431 - IAI47_04250 0.14 -1.2 893,431 - IAI47_04250 0.14 +0.7 893,442 + IAI47_04250 0.15 -0.2 893,442 + IAI47_04250 0.15 +0.0 893,469 - IAI47_04250 0.17 +0.2 893,469 - IAI47_04250 0.17 -0.6 893,515 + IAI47_04250 0.20 -0.4 893,515 + IAI47_04250 0.20 +0.7 893,515 + IAI47_04250 0.20 -0.6 893,516 - IAI47_04250 0.20 +0.9 893,516 - IAI47_04250 0.20 +0.3 893,516 - IAI47_04250 0.20 +0.5 893,526 + IAI47_04250 0.21 -0.1 893,526 + IAI47_04250 0.21 -0.1 893,527 - IAI47_04250 0.21 -1.6 893,527 - IAI47_04250 0.21 -0.4 893,609 + IAI47_04250 0.27 -0.6 893,609 + IAI47_04250 0.27 +1.7 893,610 - IAI47_04250 0.27 +2.1 893,640 + IAI47_04250 0.29 +0.2 893,640 + IAI47_04250 0.29 +0.3 893,640 + IAI47_04250 0.29 -0.1 893,641 - IAI47_04250 0.29 +0.4 893,641 - IAI47_04250 0.29 +0.5 893,676 + IAI47_04250 0.31 +0.2 893,676 + IAI47_04250 0.31 -2.3 893,676 + IAI47_04250 0.31 +0.7 893,676 + IAI47_04250 0.31 +0.5 893,677 - IAI47_04250 0.31 +1.5 893,677 - IAI47_04250 0.31 +0.3 893,677 - IAI47_04250 0.31 +0.9 893,677 - IAI47_04250 0.31 -1.1 893,835 + IAI47_04250 0.43 +1.1 893,844 + IAI47_04250 0.43 -0.2 893,844 + IAI47_04250 0.43 -1.2 893,844 + IAI47_04250 0.43 -1.6 893,844 + IAI47_04250 0.43 +1.5 893,844 + IAI47_04250 0.43 +0.7 893,844 + IAI47_04250 0.43 +0.9 893,844 + IAI47_04250 0.43 -0.4 893,845 - IAI47_04250 0.44 +0.5 893,845 - IAI47_04250 0.44 +1.5 893,891 + IAI47_04250 0.47 -0.4
Or see this region's nucleotide sequence