Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03665 and IAI47_03670 are separated by 192 nucleotides IAI47_03670 and IAI47_03675 are separated by 64 nucleotides
IAI47_03665: IAI47_03665 - agmatinase, at 764,271 to 765,191
_03665
IAI47_03670: IAI47_03670 - DUF937 domain-containing protein, at 765,384 to 765,794
_03670
IAI47_03675: IAI47_03675 - M48 family metallopeptidase, at 765,859 to 766,617
_03675
Position (kb) 765
766 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.551 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.653 kb on - strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.657 kb on + strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.658 kb on - strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.696 kb on + strand, within IAI47_03665 at 764.697 kb on - strand, within IAI47_03665 at 764.726 kb on + strand, within IAI47_03665 at 764.726 kb on + strand, within IAI47_03665 at 764.727 kb on - strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.736 kb on + strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.737 kb on - strand, within IAI47_03665 at 764.777 kb on + strand, within IAI47_03665 at 764.792 kb on - strand, within IAI47_03665 at 764.949 kb on + strand, within IAI47_03665 at 764.949 kb on + strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 764.950 kb on - strand, within IAI47_03665 at 765.032 kb on + strand, within IAI47_03665 at 765.033 kb on - strand, within IAI47_03665 at 765.033 kb on - strand, within IAI47_03665 at 765.108 kb on + strand at 765.108 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.158 kb on + strand at 765.159 kb on - strand at 765.159 kb on - strand at 765.189 kb on + strand at 765.190 kb on - strand at 765.190 kb on - strand at 765.190 kb on - strand at 765.242 kb on - strand at 765.242 kb on - strand at 765.346 kb on + strand at 765.356 kb on + strand at 765.358 kb on + strand at 765.358 kb on + strand at 765.358 kb on + strand at 765.359 kb on - strand at 765.359 kb on - strand at 765.359 kb on - strand at 765.415 kb on + strand at 765.416 kb on - strand at 765.492 kb on - strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.619 kb on + strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.620 kb on - strand, within IAI47_03670 at 765.636 kb on - strand, within IAI47_03670 at 765.653 kb on + strand, within IAI47_03670 at 765.681 kb on - strand, within IAI47_03670 at 765.722 kb on + strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.723 kb on - strand, within IAI47_03670 at 765.749 kb on + strand, within IAI47_03670 at 765.750 kb on - strand, within IAI47_03670 at 765.760 kb on + strand at 765.761 kb on - strand at 765.761 kb on - strand at 765.761 kb on - strand at 765.781 kb on + strand at 765.781 kb on + strand at 765.781 kb on + strand at 765.793 kb on - strand at 765.793 kb on - strand at 765.818 kb on + strand at 765.819 kb on - strand at 765.851 kb on - strand at 765.851 kb on - strand at 765.860 kb on + strand at 765.860 kb on + strand at 765.860 kb on + strand at 765.861 kb on - strand at 765.861 kb on - strand at 765.861 kb on - strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.882 kb on + strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 765.883 kb on - strand at 766.003 kb on - strand, within IAI47_03675 at 766.003 kb on - strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.028 kb on + strand, within IAI47_03675 at 766.029 kb on - strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.034 kb on + strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.035 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.176 kb on - strand, within IAI47_03675 at 766.194 kb on + strand, within IAI47_03675 at 766.194 kb on + strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.195 kb on - strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.200 kb on + strand, within IAI47_03675 at 766.201 kb on - strand, within IAI47_03675 at 766.266 kb on + strand, within IAI47_03675 at 766.266 kb on + strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.267 kb on - strand, within IAI47_03675 at 766.284 kb on - strand, within IAI47_03675 at 766.284 kb on - strand, within IAI47_03675 at 766.293 kb on + strand, within IAI47_03675 at 766.294 kb on - strand, within IAI47_03675 at 766.294 kb on - strand, within IAI47_03675 at 766.338 kb on - strand, within IAI47_03675 at 766.338 kb on - strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.344 kb on + strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.345 kb on - strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.346 kb on + strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.347 kb on - strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.368 kb on + strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.369 kb on - strand, within IAI47_03675 at 766.371 kb on + strand, within IAI47_03675 at 766.371 kb on + strand, within IAI47_03675 at 766.372 kb on - strand, within IAI47_03675 at 766.372 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.396 kb on - strand, within IAI47_03675 at 766.412 kb on + strand, within IAI47_03675 at 766.412 kb on + strand, within IAI47_03675 at 766.413 kb on - strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.440 kb on + strand, within IAI47_03675 at 766.441 kb on - strand, within IAI47_03675 at 766.441 kb on - strand, within IAI47_03675 at 766.467 kb on + strand, within IAI47_03675 at 766.468 kb on - strand, within IAI47_03675 at 766.483 kb on + strand, within IAI47_03675 at 766.483 kb on + strand, within IAI47_03675 at 766.484 kb on - strand, within IAI47_03675 at 766.484 kb on - strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.503 kb on + strand, within IAI47_03675 at 766.504 kb on - strand, within IAI47_03675 at 766.504 kb on - strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.505 kb on + strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.506 kb on - strand, within IAI47_03675 at 766.514 kb on + strand, within IAI47_03675 at 766.515 kb on - strand, within IAI47_03675 at 766.545 kb on + strand at 766.546 kb on - strand at 766.552 kb on + strand at 766.553 kb on - strand at 766.595 kb on - strand at 766.595 kb on - strand at 766.622 kb on + strand at 766.623 kb on - strand at 766.633 kb on + strand at 766.634 kb on - strand at 766.634 kb on - strand at 766.641 kb on + strand at 766.641 kb on + strand at 766.677 kb on + strand at 766.677 kb on + strand at 766.690 kb on + strand at 766.691 kb on - strand at 766.691 kb on - strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.692 kb on + strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.693 kb on - strand at 766.715 kb on + strand at 766.764 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.773 kb on + strand at 766.774 kb on - strand at 766.774 kb on - strand at 766.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 764,551 - IAI47_03665 0.30 -0.6 764,653 - IAI47_03665 0.41 -0.7 764,653 - IAI47_03665 0.41 +0.1 764,653 - IAI47_03665 0.41 -0.7 764,657 + IAI47_03665 0.42 -0.4 764,657 + IAI47_03665 0.42 -1.1 764,657 + IAI47_03665 0.42 -0.9 764,657 + IAI47_03665 0.42 +0.3 764,658 - IAI47_03665 0.42 -0.5 764,658 - IAI47_03665 0.42 -1.9 764,658 - IAI47_03665 0.42 -1.7 764,658 - IAI47_03665 0.42 -1.2 764,696 + IAI47_03665 0.46 -1.9 764,696 + IAI47_03665 0.46 -1.7 764,696 + IAI47_03665 0.46 -0.5 764,697 - IAI47_03665 0.46 -1.1 764,726 + IAI47_03665 0.49 -0.7 764,726 + IAI47_03665 0.49 -0.6 764,727 - IAI47_03665 0.50 +0.5 764,736 + IAI47_03665 0.50 +0.4 764,736 + IAI47_03665 0.50 -2.3 764,736 + IAI47_03665 0.50 -1.1 764,737 - IAI47_03665 0.51 +0.9 764,737 - IAI47_03665 0.51 -0.7 764,737 - IAI47_03665 0.51 -1.7 764,737 - IAI47_03665 0.51 +0.8 764,777 + IAI47_03665 0.55 -0.7 764,792 - IAI47_03665 0.57 +0.1 764,949 + IAI47_03665 0.74 +0.9 764,949 + IAI47_03665 0.74 +0.3 764,950 - IAI47_03665 0.74 +0.2 764,950 - IAI47_03665 0.74 -2.2 764,950 - IAI47_03665 0.74 +0.1 764,950 - IAI47_03665 0.74 -1.4 764,950 - IAI47_03665 0.74 -1.1 765,032 + IAI47_03665 0.83 +0.7 765,033 - IAI47_03665 0.83 -0.1 765,033 - IAI47_03665 0.83 +0.3 765,108 + -2.8 765,108 + -0.5 765,158 + -0.3 765,158 + -1.2 765,158 + -1.4 765,158 + -2.3 765,159 - -0.1 765,159 - -2.1 765,189 + +1.2 765,190 - +2.7 765,190 - +0.9 765,190 - +0.3 765,242 - +0.1 765,242 - +1.3 765,346 + +1.6 765,356 + +0.7 765,358 + -0.4 765,358 + -1.1 765,358 + -0.1 765,359 - -0.1 765,359 - +0.2 765,359 - -0.3 765,415 + +0.0 765,416 - +0.7 765,492 - IAI47_03670 0.26 +0.4 765,619 + IAI47_03670 0.57 +0.0 765,619 + IAI47_03670 0.57 +0.4 765,619 + IAI47_03670 0.57 +0.0 765,620 - IAI47_03670 0.57 -0.1 765,620 - IAI47_03670 0.57 +1.1 765,620 - IAI47_03670 0.57 +0.3 765,620 - IAI47_03670 0.57 +0.7 765,636 - IAI47_03670 0.61 +1.2 765,653 + IAI47_03670 0.65 -1.7 765,681 - IAI47_03670 0.72 -0.5 765,722 + IAI47_03670 0.82 +1.9 765,723 - IAI47_03670 0.82 +0.5 765,723 - IAI47_03670 0.82 -0.5 765,723 - IAI47_03670 0.82 +0.5 765,749 + IAI47_03670 0.89 -0.3 765,750 - IAI47_03670 0.89 +0.7 765,760 + -0.3 765,761 - +0.5 765,761 - +1.7 765,761 - +1.2 765,781 + +1.5 765,781 + -0.5 765,781 + -0.3 765,793 - +0.4 765,793 - -0.1 765,818 + +1.3 765,819 - -0.1 765,851 - -0.1 765,851 - +1.5 765,860 + +0.1 765,860 + +0.9 765,860 + -1.8 765,861 - -0.7 765,861 - -0.3 765,861 - -0.5 765,882 + -1.0 765,882 + +0.4 765,882 + -0.1 765,882 + -0.4 765,882 + -1.9 765,882 + -0.7 765,883 - -0.4 765,883 - -1.1 765,883 - -0.5 765,883 - +1.7 765,883 - +1.9 765,883 - +0.5 765,883 - +0.1 765,883 - +0.3 766,003 - IAI47_03675 0.19 -0.8 766,003 - IAI47_03675 0.19 -1.2 766,028 + IAI47_03675 0.22 +0.7 766,028 + IAI47_03675 0.22 -0.5 766,028 + IAI47_03675 0.22 -0.8 766,028 + IAI47_03675 0.22 +1.8 766,029 - IAI47_03675 0.22 -0.2 766,034 + IAI47_03675 0.23 -0.1 766,034 + IAI47_03675 0.23 -0.9 766,034 + IAI47_03675 0.23 -0.1 766,034 + IAI47_03675 0.23 -0.4 766,034 + IAI47_03675 0.23 -0.7 766,034 + IAI47_03675 0.23 -0.7 766,035 - IAI47_03675 0.23 +0.2 766,035 - IAI47_03675 0.23 -0.4 766,035 - IAI47_03675 0.23 -1.1 766,035 - IAI47_03675 0.23 +0.9 766,035 - IAI47_03675 0.23 +0.6 766,035 - IAI47_03675 0.23 +0.5 766,035 - IAI47_03675 0.23 -0.2 766,176 - IAI47_03675 0.42 -0.2 766,176 - IAI47_03675 0.42 +0.0 766,176 - IAI47_03675 0.42 -0.1 766,176 - IAI47_03675 0.42 +0.8 766,194 + IAI47_03675 0.44 +0.4 766,194 + IAI47_03675 0.44 +0.7 766,195 - IAI47_03675 0.44 +0.2 766,195 - IAI47_03675 0.44 -2.7 766,195 - IAI47_03675 0.44 +0.2 766,200 + IAI47_03675 0.45 -0.9 766,200 + IAI47_03675 0.45 +0.7 766,200 + IAI47_03675 0.45 -1.0 766,200 + IAI47_03675 0.45 +0.5 766,201 - IAI47_03675 0.45 -0.1 766,266 + IAI47_03675 0.54 +1.8 766,266 + IAI47_03675 0.54 +2.2 766,267 - IAI47_03675 0.54 +0.2 766,267 - IAI47_03675 0.54 -0.3 766,267 - IAI47_03675 0.54 +0.0 766,267 - IAI47_03675 0.54 -0.3 766,284 - IAI47_03675 0.56 +0.2 766,284 - IAI47_03675 0.56 -0.3 766,293 + IAI47_03675 0.57 -0.1 766,294 - IAI47_03675 0.57 +0.7 766,294 - IAI47_03675 0.57 -0.4 766,338 - IAI47_03675 0.63 -0.1 766,338 - IAI47_03675 0.63 -0.7 766,344 + IAI47_03675 0.64 +0.6 766,344 + IAI47_03675 0.64 +0.3 766,344 + IAI47_03675 0.64 +0.9 766,345 - IAI47_03675 0.64 -0.7 766,345 - IAI47_03675 0.64 +0.8 766,345 - IAI47_03675 0.64 -1.7 766,346 + IAI47_03675 0.64 +1.9 766,346 + IAI47_03675 0.64 +0.7 766,346 + IAI47_03675 0.64 +0.9 766,346 + IAI47_03675 0.64 -1.9 766,346 + IAI47_03675 0.64 -0.3 766,347 - IAI47_03675 0.64 -0.7 766,347 - IAI47_03675 0.64 -0.3 766,347 - IAI47_03675 0.64 -0.1 766,347 - IAI47_03675 0.64 -1.5 766,347 - IAI47_03675 0.64 +0.1 766,368 + IAI47_03675 0.67 +0.0 766,368 + IAI47_03675 0.67 -0.3 766,368 + IAI47_03675 0.67 -0.7 766,368 + IAI47_03675 0.67 -1.1 766,368 + IAI47_03675 0.67 +0.1 766,369 - IAI47_03675 0.67 +0.2 766,369 - IAI47_03675 0.67 +1.6 766,369 - IAI47_03675 0.67 -0.4 766,369 - IAI47_03675 0.67 +1.5 766,369 - IAI47_03675 0.67 +0.6 766,371 + IAI47_03675 0.67 +0.4 766,371 + IAI47_03675 0.67 +0.9 766,372 - IAI47_03675 0.68 -0.3 766,372 - IAI47_03675 0.68 +0.2 766,396 - IAI47_03675 0.71 -1.1 766,396 - IAI47_03675 0.71 +1.3 766,396 - IAI47_03675 0.71 +0.7 766,412 + IAI47_03675 0.73 +1.3 766,412 + IAI47_03675 0.73 +0.6 766,413 - IAI47_03675 0.73 +0.1 766,440 + IAI47_03675 0.77 -2.7 766,440 + IAI47_03675 0.77 -0.3 766,440 + IAI47_03675 0.77 -0.1 766,440 + IAI47_03675 0.77 +0.4 766,441 - IAI47_03675 0.77 -0.8 766,441 - IAI47_03675 0.77 +0.7 766,467 + IAI47_03675 0.80 -0.1 766,468 - IAI47_03675 0.80 +1.5 766,483 + IAI47_03675 0.82 +2.1 766,483 + IAI47_03675 0.82 +0.7 766,484 - IAI47_03675 0.82 -0.2 766,484 - IAI47_03675 0.82 +0.7 766,503 + IAI47_03675 0.85 +0.2 766,503 + IAI47_03675 0.85 +0.5 766,503 + IAI47_03675 0.85 -0.8 766,503 + IAI47_03675 0.85 -0.7 766,504 - IAI47_03675 0.85 -0.5 766,504 - IAI47_03675 0.85 -1.4 766,505 + IAI47_03675 0.85 +1.5 766,505 + IAI47_03675 0.85 -1.4 766,505 + IAI47_03675 0.85 -0.1 766,505 + IAI47_03675 0.85 -0.7 766,506 - IAI47_03675 0.85 -0.7 766,506 - IAI47_03675 0.85 -1.2 766,506 - IAI47_03675 0.85 +0.9 766,506 - IAI47_03675 0.85 -0.1 766,514 + IAI47_03675 0.86 +1.6 766,515 - IAI47_03675 0.86 -0.3 766,545 + -0.9 766,546 - +0.9 766,552 + -0.7 766,553 - +0.8 766,595 - -0.1 766,595 - +0.4 766,622 + -0.4 766,623 - -0.5 766,633 + -0.0 766,634 - +0.5 766,634 - +0.9 766,641 + +1.7 766,641 + +0.4 766,677 + +0.6 766,677 + +2.5 766,690 + +0.5 766,691 - -1.2 766,691 - +1.3 766,692 + -1.4 766,692 + +0.7 766,692 + -0.0 766,692 + -1.1 766,693 - -1.0 766,693 - +0.9 766,693 - +0.6 766,693 - -1.2 766,693 - -1.5 766,693 - -1.5 766,715 + +0.1 766,764 + +0.0 766,773 + -0.2 766,773 + -0.8 766,773 + -1.2 766,773 + +0.1 766,773 + -1.1 766,774 - -0.8 766,774 - -1.4 766,774 - -0.1
Or see this region's nucleotide sequence