Experiment: Ying_all64 rep A; time point 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03235 and IAI47_03240 are separated by 6 nucleotides IAI47_03240 and IAI47_03245 are separated by 236 nucleotides
IAI47_03235: IAI47_03235 - tol-pal system-associated acyl-CoA thioesterase, at 671,045 to 671,767
_03235
IAI47_03240: IAI47_03240 - TonB system transport protein ExbD, at 671,774 to 672,196
_03240
IAI47_03245: IAI47_03245 - MFS transporter, at 672,433 to 673,758
_03245
Position (kb) 671
672
673 Strain fitness (log2 ratio) -2
-1
0
1
2 at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.795 kb on + strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.796 kb on - strand at 670.977 kb on + strand at 670.977 kb on + strand at 670.980 kb on + strand at 670.981 kb on - strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.075 kb on + strand at 671.076 kb on - strand at 671.076 kb on - strand at 671.090 kb on - strand at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.162 kb on + strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.163 kb on - strand, within IAI47_03235 at 671.227 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.233 kb on + strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.234 kb on - strand, within IAI47_03235 at 671.315 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.338 kb on + strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.351 kb on - strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.455 kb on + strand, within IAI47_03235 at 671.612 kb on + strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.613 kb on - strand, within IAI47_03235 at 671.639 kb on - strand, within IAI47_03235 at 671.642 kb on + strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.643 kb on - strand, within IAI47_03235 at 671.765 kb on + strand at 671.765 kb on + strand at 671.765 kb on + strand at 671.765 kb on + strand at 671.766 kb on - strand at 671.766 kb on - strand at 671.773 kb on + strand at 671.774 kb on - strand at 671.827 kb on + strand, within IAI47_03240 at 671.827 kb on + strand, within IAI47_03240 at 671.842 kb on + strand, within IAI47_03240 at 671.876 kb on - strand, within IAI47_03240 at 671.876 kb on - strand, within IAI47_03240 at 671.966 kb on + strand, within IAI47_03240 at 671.966 kb on + strand, within IAI47_03240 at 671.967 kb on - strand, within IAI47_03240 at 671.967 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.975 kb on - strand, within IAI47_03240 at 671.987 kb on - strand, within IAI47_03240 at 671.996 kb on + strand, within IAI47_03240 at 671.997 kb on - strand, within IAI47_03240 at 671.997 kb on - strand, within IAI47_03240 at 672.107 kb on + strand, within IAI47_03240 at 672.133 kb on + strand, within IAI47_03240 at 672.133 kb on + strand, within IAI47_03240 at 672.134 kb on - strand, within IAI47_03240 at 672.152 kb on + strand, within IAI47_03240 at 672.194 kb on + strand at 672.195 kb on - strand at 672.203 kb on - strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.215 kb on + strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.216 kb on - strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.226 kb on + strand at 672.227 kb on - strand at 672.245 kb on + strand at 672.246 kb on - strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.301 kb on + strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.302 kb on - strand at 672.334 kb on + strand at 672.335 kb on - strand at 672.338 kb on + strand at 672.338 kb on + strand at 672.338 kb on + strand at 672.339 kb on - strand at 672.339 kb on - strand at 672.339 kb on - strand at 672.342 kb on + strand at 672.346 kb on + strand at 672.355 kb on - strand at 672.382 kb on + strand at 672.382 kb on + strand at 672.383 kb on - strand at 672.402 kb on + strand at 672.402 kb on + strand at 672.421 kb on + strand at 672.422 kb on - strand at 672.422 kb on - strand at 672.432 kb on + strand at 672.432 kb on + strand at 672.433 kb on - strand at 672.483 kb on + strand at 672.483 kb on + strand at 672.483 kb on + strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.484 kb on - strand at 672.504 kb on + strand at 672.505 kb on - strand at 672.505 kb on - strand at 672.520 kb on + strand at 672.520 kb on + strand at 672.520 kb on + strand at 672.521 kb on - strand at 672.541 kb on + strand at 672.542 kb on - strand at 672.544 kb on + strand at 672.544 kb on + strand at 672.544 kb on + strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.545 kb on - strand at 672.662 kb on + strand, within IAI47_03245 at 672.670 kb on + strand, within IAI47_03245 at 672.670 kb on + strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.671 kb on - strand, within IAI47_03245 at 672.693 kb on + strand, within IAI47_03245 at 672.694 kb on - strand, within IAI47_03245 at 672.720 kb on - strand, within IAI47_03245 at 672.732 kb on + strand, within IAI47_03245 at 672.733 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.761 kb on - strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.765 kb on + strand, within IAI47_03245 at 672.766 kb on - strand, within IAI47_03245 at 672.766 kb on - strand, within IAI47_03245 at 672.770 kb on + strand, within IAI47_03245 at 672.770 kb on + strand, within IAI47_03245 at 672.771 kb on - strand, within IAI47_03245 at 672.771 kb on - strand, within IAI47_03245 at 672.771 kb on - strand, within IAI47_03245 at 672.848 kb on + strand, within IAI47_03245 at 672.856 kb on + strand, within IAI47_03245 at 672.856 kb on + strand, within IAI47_03245 at 672.856 kb on + strand, within IAI47_03245 at 672.857 kb on - strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.051 kb on + strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.052 kb on - strand, within IAI47_03245 at 673.053 kb on + strand, within IAI47_03245 at 673.054 kb on - strand, within IAI47_03245 at 673.089 kb on + strand, within IAI47_03245 at 673.095 kb on + strand, within IAI47_03245 at 673.095 kb on + strand, within IAI47_03245 at 673.096 kb on - strand, within IAI47_03245 at 673.096 kb on - strand, within IAI47_03245 at 673.096 kb on - strand, within IAI47_03245 at 673.096 kb on - strand, within IAI47_03245
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_all64 rep A; time point 2 remove 670,795 + -0.4 670,795 + +2.5 670,795 + +1.9 670,795 + +0.0 670,796 - +0.5 670,796 - +0.1 670,796 - -1.1 670,796 - +0.3 670,796 - +0.3 670,796 - +1.1 670,977 + -0.3 670,977 + +0.7 670,980 + +1.8 670,981 - -0.8 671,075 + -1.8 671,075 + -0.6 671,075 + +1.5 671,075 + +0.3 671,075 + +0.9 671,075 + -0.7 671,075 + +0.9 671,075 + +0.8 671,075 + +0.4 671,075 + -0.6 671,075 + +2.5 671,075 + +0.3 671,076 - -1.1 671,076 - -0.6 671,090 - -0.1 671,162 + IAI47_03235 0.16 +0.9 671,162 + IAI47_03235 0.16 +0.1 671,162 + IAI47_03235 0.16 +1.0 671,163 - IAI47_03235 0.16 -0.1 671,163 - IAI47_03235 0.16 +0.3 671,163 - IAI47_03235 0.16 +0.2 671,163 - IAI47_03235 0.16 +0.2 671,163 - IAI47_03235 0.16 -0.1 671,227 + IAI47_03235 0.25 +0.7 671,233 + IAI47_03235 0.26 -1.1 671,233 + IAI47_03235 0.26 +0.9 671,234 - IAI47_03235 0.26 -0.7 671,234 - IAI47_03235 0.26 -0.4 671,234 - IAI47_03235 0.26 +0.2 671,315 + IAI47_03235 0.37 -0.7 671,338 + IAI47_03235 0.41 +1.1 671,338 + IAI47_03235 0.41 -0.1 671,351 - IAI47_03235 0.42 +2.6 671,351 - IAI47_03235 0.42 +0.3 671,455 + IAI47_03235 0.57 +0.3 671,455 + IAI47_03235 0.57 +0.9 671,612 + IAI47_03235 0.78 +0.7 671,613 - IAI47_03235 0.79 -0.5 671,613 - IAI47_03235 0.79 +0.9 671,639 - IAI47_03235 0.82 -0.7 671,642 + IAI47_03235 0.83 +0.9 671,643 - IAI47_03235 0.83 +1.0 671,643 - IAI47_03235 0.83 -0.4 671,643 - IAI47_03235 0.83 -0.7 671,765 + -0.6 671,765 + +1.4 671,765 + +0.1 671,765 + -1.9 671,766 - +0.9 671,766 - -0.4 671,773 + +0.5 671,774 - +0.9 671,827 + IAI47_03240 0.13 -0.5 671,827 + IAI47_03240 0.13 +0.5 671,842 + IAI47_03240 0.16 +0.3 671,876 - IAI47_03240 0.24 +2.4 671,876 - IAI47_03240 0.24 -0.1 671,966 + IAI47_03240 0.45 +0.4 671,966 + IAI47_03240 0.45 +0.9 671,967 - IAI47_03240 0.46 +0.3 671,967 - IAI47_03240 0.46 -1.3 671,975 - IAI47_03240 0.48 -1.3 671,975 - IAI47_03240 0.48 +0.1 671,975 - IAI47_03240 0.48 +0.5 671,987 - IAI47_03240 0.50 +0.9 671,996 + IAI47_03240 0.52 +1.5 671,997 - IAI47_03240 0.53 -1.7 671,997 - IAI47_03240 0.53 +0.5 672,107 + IAI47_03240 0.79 -0.1 672,133 + IAI47_03240 0.85 +1.5 672,133 + IAI47_03240 0.85 +0.9 672,134 - IAI47_03240 0.85 -1.4 672,152 + IAI47_03240 0.89 -1.1 672,194 + -0.3 672,195 - +2.0 672,203 - -0.3 672,215 + +0.2 672,215 + +0.9 672,215 + -0.5 672,215 + -0.4 672,215 + +0.6 672,215 + -0.0 672,215 + +1.0 672,216 - +0.1 672,216 - +0.9 672,216 - +0.5 672,216 - +0.2 672,216 - +0.9 672,226 + -1.1 672,226 + -0.3 672,226 + +1.9 672,226 + +0.4 672,227 - -0.4 672,245 + -0.4 672,246 - -0.6 672,301 + -0.1 672,301 + +0.9 672,301 + -1.3 672,301 + +0.8 672,301 + +0.5 672,301 + +1.2 672,301 + +0.4 672,302 - -0.4 672,302 - -0.9 672,302 - -0.1 672,302 - +0.2 672,302 - +0.2 672,302 - +1.1 672,302 - -0.7 672,334 + +0.2 672,335 - +1.2 672,338 + -0.1 672,338 + +0.6 672,338 + +0.5 672,339 - -0.5 672,339 - +0.9 672,339 - -0.7 672,342 + -0.6 672,346 + -0.1 672,355 - +0.1 672,382 + +0.7 672,382 + -1.0 672,383 - -0.4 672,402 + +1.1 672,402 + +0.2 672,421 + +0.5 672,422 - +0.6 672,422 - +0.3 672,432 + -0.5 672,432 + +0.5 672,433 - +0.0 672,483 + +0.3 672,483 + +0.6 672,483 + -0.2 672,484 - +0.7 672,484 - -0.3 672,484 - -0.4 672,484 - +1.5 672,504 + -0.5 672,505 - +0.3 672,505 - -1.0 672,520 + -0.7 672,520 + +0.2 672,520 + +0.9 672,521 - -0.1 672,541 + -0.1 672,542 - +1.3 672,544 + -0.5 672,544 + -1.9 672,544 + +0.2 672,545 - -0.2 672,545 - +0.4 672,545 - +1.1 672,545 - +0.0 672,545 - -0.5 672,662 + IAI47_03245 0.17 +0.5 672,670 + IAI47_03245 0.18 -0.3 672,670 + IAI47_03245 0.18 +0.6 672,671 - IAI47_03245 0.18 -1.1 672,671 - IAI47_03245 0.18 -1.4 672,671 - IAI47_03245 0.18 -0.5 672,671 - IAI47_03245 0.18 +0.3 672,671 - IAI47_03245 0.18 +0.2 672,671 - IAI47_03245 0.18 +0.2 672,671 - IAI47_03245 0.18 -0.7 672,693 + IAI47_03245 0.20 +0.7 672,694 - IAI47_03245 0.20 +0.0 672,720 - IAI47_03245 0.22 -0.9 672,732 + IAI47_03245 0.23 -0.3 672,733 - IAI47_03245 0.23 -0.4 672,761 - IAI47_03245 0.25 +2.2 672,761 - IAI47_03245 0.25 +1.9 672,761 - IAI47_03245 0.25 -0.8 672,765 + IAI47_03245 0.25 +0.0 672,765 + IAI47_03245 0.25 +0.6 672,765 + IAI47_03245 0.25 -0.3 672,766 - IAI47_03245 0.25 -0.7 672,766 - IAI47_03245 0.25 -0.2 672,770 + IAI47_03245 0.25 +0.4 672,770 + IAI47_03245 0.25 -0.8 672,771 - IAI47_03245 0.25 -0.1 672,771 - IAI47_03245 0.25 -0.3 672,771 - IAI47_03245 0.25 -2.6 672,848 + IAI47_03245 0.31 -0.5 672,856 + IAI47_03245 0.32 -0.6 672,856 + IAI47_03245 0.32 -2.3 672,856 + IAI47_03245 0.32 -0.3 672,857 - IAI47_03245 0.32 -0.3 673,051 + IAI47_03245 0.47 -0.1 673,051 + IAI47_03245 0.47 +0.0 673,051 + IAI47_03245 0.47 -0.3 673,051 + IAI47_03245 0.47 +2.2 673,051 + IAI47_03245 0.47 +1.2 673,052 - IAI47_03245 0.47 +0.7 673,052 - IAI47_03245 0.47 +1.3 673,052 - IAI47_03245 0.47 -0.7 673,052 - IAI47_03245 0.47 +0.2 673,052 - IAI47_03245 0.47 +0.6 673,052 - IAI47_03245 0.47 -0.7 673,052 - IAI47_03245 0.47 -0.3 673,052 - IAI47_03245 0.47 -1.0 673,052 - IAI47_03245 0.47 +0.8 673,052 - IAI47_03245 0.47 +0.0 673,053 + IAI47_03245 0.47 +0.1 673,054 - IAI47_03245 0.47 +0.5 673,089 + IAI47_03245 0.49 +1.9 673,095 + IAI47_03245 0.50 +1.0 673,095 + IAI47_03245 0.50 +0.9 673,096 - IAI47_03245 0.50 +1.3 673,096 - IAI47_03245 0.50 +1.7 673,096 - IAI47_03245 0.50 -1.1 673,096 - IAI47_03245 0.50 +0.3
Or see this region's nucleotide sequence