Strain Fitness in Pantoea sp. MT58 around IAI47_21335

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
931	+		IAI47_21335	0.87	-1.1
931	+		IAI47_21335	0.87	+0.6
931	+		IAI47_21335	0.87	-0.9
931	+		IAI47_21335	0.87	+0.3
931	+		IAI47_21335	0.87	+0.1
932	-		IAI47_21335	0.87	-0.7
932	-		IAI47_21335	0.87	-0.4
1,040	+				+0.0
1,040	+				+0.4
1,040	+				-1.3
1,040	+				+1.4
1,111	+				+0.0
1,138	+				-0.4
1,138	+				-0.9
1,138	+				+0.2
1,139	-				-1.8
1,145	+				+0.2
1,145	+				+2.0
1,145	+				+0.2
1,146	-				-2.5
1,151	+				+0.1
1,151	+				+0.7
1,151	+				-0.7
1,151	+				+0.3
1,152	-				+0.7
1,152	-				+0.2
1,152	-				-0.1
1,152	-				+0.7
1,158	+				-1.3
1,159	-				-0.3
1,167	+				+0.6
1,182	-				-0.3
1,182	-				+0.5
1,182	-				-0.7
1,191	+				-1.1
1,191	+				-1.4
1,191	+				-0.8
1,191	+				-2.3
1,191	+				+1.0
1,191	+				-1.3
1,192	-				-0.3
1,192	-				-0.4
1,192	-				+0.2
1,192	-				+2.6
1,192	-				+1.5
1,192	-				+0.9
1,192	-				+0.3
1,192	-				+0.4
1,192	-				-2.1
1,192	-				+1.0
1,192	-				-0.3
1,201	+				-0.5
1,201	+				+1.0
1,202	-				+2.9
1,202	-				-1.3
1,202	-				+0.3
1,202	-				-0.1
1,202	-				-0.4
1,202	-				-0.7
1,205	-				+1.0
1,205	-				+0.4
1,205	-				-0.3
1,236	+				+0.0
1,237	-				+1.2
1,237	-				-1.3
1,277	+				+1.2
1,286	+				+0.7
1,286	+				-0.3
1,297	+				+0.7
1,297	+				-2.7
1,297	+				+0.9
1,297	+				-2.4
1,297	+				+1.3
1,297	+				+0.5
1,297	+				+0.3
1,297	+				+3.4
1,297	+				-1.3
1,297	+				-0.1
1,297	+				+1.9
1,298	-				+0.2
1,298	-				-0.8
1,298	-				-2.4
1,298	-				+0.2
1,298	-				-0.3
1,298	-				-0.8
1,298	-				+0.3
1,298	-				+0.3
1,299	+				-1.8
1,300	-				+1.1
1,314	+				+0.2
1,314	+				-0.3
1,322	+				-0.0
1,323	-				+0.7
1,351	+				+1.2
1,352	-				+0.4
1,352	-				-1.2
1,362	+				+1.3
1,362	+				+0.4
1,362	+				-0.5
1,363	-				+2.7
1,371	+				+0.4
1,372	-				+1.9
1,372	-				+0.6
1,372	-				+1.6
1,372	-				+0.7
1,374	+				+0.3
1,374	+				-1.5
1,374	+				-1.3
1,374	+				-0.1
1,374	+				+0.4
1,374	+				+0.9
1,374	+				+0.1
1,375	-				+1.1
1,375	-				-0.5
1,375	-				+0.9
1,375	-				-2.4
1,375	-				+0.7
1,375	-				+0.7
1,405	+				+1.4
1,446	+				+1.7
1,447	-				+0.3
1,451	+				-0.2
1,458	+				-0.1
1,458	+				+0.4
1,459	-				+1.4
1,467	+				+0.7
1,467	+				-0.4
1,468	-				-0.5
1,468	-				+1.0
1,488	+				+2.7
1,488	+				-0.2
1,488	+				+0.2
1,489	-				-0.3
1,489	-				-0.5
1,489	-				-2.3
1,489	-				+1.2
1,489	-				-0.5
1,525	+				-0.6
1,532	+				+0.5
1,532	+				+1.5
1,533	-				-1.9
1,533	-				-1.6
1,533	-				+1.2
1,535	-				+0.6
1,535	-				+0.3
1,535	-				-0.3
1,535	-				+0.4
1,541	+				+1.2
1,541	+				+1.3
1,542	-				-2.0
1,573	+				+0.2
1,573	+				-1.1
1,573	+				-2.0
1,574	-				+0.4
1,584	+				-0.3
1,584	+				+2.3
1,584	+				-0.2
1,584	+				+0.3
1,585	-				+0.6
1,585	-				-0.6
1,598	-				+1.5
1,615	-				+0.7
1,626	+				+2.3
1,627	-				-2.1
1,627	-				+0.0
1,627	-				-0.3
1,646	+				+1.7
1,646	+				+0.2
1,651	+				-1.3
1,652	-				+0.3
1,670	+				+0.4
1,670	+				+1.6
1,671	-				+0.2
1,671	-				+0.5
1,671	-				+1.1
1,671	-				-0.0
1,671	-				-1.3
1,686	+				-0.8
1,687	-				-1.4
1,710	+				-0.3
1,734	-				-0.3
1,748	+				+0.6
1,801	-				+0.2
1,812	+				-1.6
1,813	-				+1.0
1,818	+				-0.3
1,818	+				-0.6
1,819	-				-0.8
1,819	-				-0.2
1,852	+				+0.7
1,853	-				+0.7
1,863	+				-0.3
1,863	+				+0.7
1,863	+				-1.6
1,864	-				-0.1
1,864	-				+1.7
1,864	-				-0.3
1,877	+				-0.5
1,877	+				+0.3
1,878	-				+2.0
1,926	-				+1.3
1,927	-				+0.2
1,948	+				+0.6
1,948	+				+1.7
1,948	+				-0.3
1,949	-				-1.8
1,955	+				-1.2
1,955	+				-1.3
1,955	+				+0.7
1,955	+				-1.8
1,955	+				+2.7
1,955	+				+0.7
1,956	-				-0.8
1,964	+				+2.6
1,976	-				+1.0
1,976	-				+0.4
2,005	+				+0.2
2,005	+				-0.8
2,006	-				-0.8
2,006	-				-0.7
2,047	+				+0.5
2,047	+				-0.6
2,047	+				+1.0
2,047	+				+2.0
2,048	-				-0.1
2,054	+				-1.3
2,054	+				+0.0
2,055	-				+0.6
2,055	-				+0.4
2,055	-				-0.0
2,055	-				+0.5
2,056	+				+1.3
2,056	+				-0.7
2,056	+				-2.2
2,056	+				-1.8
2,056	+				-0.3
2,057	-				-1.3
2,057	-				-2.1