Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19700 and IAI47_19705 are separated by 609 nucleotides IAI47_19705 and IAI47_19710 are separated by 185 nucleotides IAI47_19710 and IAI47_19715 overlap by 4 nucleotides
IAI47_19700: IAI47_19700 - EAL domain-containing protein, at 167,656 to 168,828
_19700
IAI47_19705: IAI47_19705 - D-2-hydroxyacid dehydrogenase family protein, at 169,438 to 170,409
_19705
IAI47_19710: IAI47_19710 - helix-turn-helix transcriptional regulator, at 170,595 to 170,912
_19710
IAI47_19715: IAI47_19715 - rhodanese family protein, at 170,909 to 171,436
_19715
Position (kb) 169
170
171 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 168.451 kb on + strand, within IAI47_19700 at 168.452 kb on - strand, within IAI47_19700 at 168.639 kb on + strand, within IAI47_19700 at 168.639 kb on + strand, within IAI47_19700 at 168.742 kb on - strand at 168.774 kb on + strand at 168.774 kb on + strand at 168.774 kb on + strand at 168.775 kb on - strand at 168.777 kb on + strand at 168.778 kb on - strand at 168.785 kb on - strand at 168.785 kb on - strand at 168.840 kb on - strand at 168.870 kb on + strand at 168.873 kb on - strand at 168.874 kb on + strand at 168.882 kb on - strand at 168.882 kb on - strand at 168.933 kb on + strand at 168.959 kb on + strand at 168.959 kb on + strand at 168.968 kb on + strand at 168.968 kb on + strand at 168.969 kb on - strand at 168.977 kb on + strand at 168.977 kb on + strand at 168.978 kb on - strand at 169.013 kb on + strand at 169.039 kb on - strand at 169.040 kb on + strand at 169.040 kb on + strand at 169.041 kb on - strand at 169.041 kb on - strand at 169.052 kb on + strand at 169.052 kb on + strand at 169.053 kb on - strand at 169.053 kb on - strand at 169.053 kb on - strand at 169.079 kb on + strand at 169.086 kb on + strand at 169.103 kb on + strand at 169.104 kb on - strand at 169.104 kb on - strand at 169.104 kb on - strand at 169.116 kb on + strand at 169.116 kb on + strand at 169.116 kb on + strand at 169.116 kb on + strand at 169.117 kb on - strand at 169.117 kb on - strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.141 kb on + strand at 169.142 kb on - strand at 169.142 kb on - strand at 169.150 kb on + strand at 169.194 kb on + strand at 169.195 kb on - strand at 169.195 kb on - strand at 169.264 kb on + strand at 169.316 kb on - strand at 169.324 kb on + strand at 169.324 kb on + strand at 169.324 kb on + strand at 169.325 kb on - strand at 169.325 kb on - strand at 169.325 kb on - strand at 169.331 kb on + strand at 169.332 kb on - strand at 169.332 kb on - strand at 169.332 kb on - strand at 169.336 kb on - strand at 169.336 kb on - strand at 169.336 kb on - strand at 169.346 kb on + strand at 169.370 kb on + strand at 169.373 kb on + strand at 169.374 kb on - strand at 169.374 kb on - strand at 169.380 kb on + strand at 169.380 kb on + strand at 169.380 kb on + strand at 169.381 kb on - strand at 169.381 kb on - strand at 169.386 kb on + strand at 169.387 kb on - strand at 169.449 kb on + strand at 169.449 kb on + strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.450 kb on - strand at 169.451 kb on + strand at 169.452 kb on - strand at 169.452 kb on - strand at 169.468 kb on + strand at 169.516 kb on + strand at 169.516 kb on + strand at 169.516 kb on + strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.517 kb on - strand at 169.592 kb on + strand, within IAI47_19705 at 169.593 kb on - strand, within IAI47_19705 at 169.593 kb on - strand, within IAI47_19705 at 169.655 kb on + strand, within IAI47_19705 at 169.655 kb on + strand, within IAI47_19705 at 169.672 kb on - strand, within IAI47_19705 at 169.704 kb on + strand, within IAI47_19705 at 169.704 kb on + strand, within IAI47_19705 at 169.705 kb on - strand, within IAI47_19705 at 169.705 kb on - strand, within IAI47_19705 at 169.727 kb on + strand, within IAI47_19705 at 169.728 kb on - strand, within IAI47_19705 at 169.728 kb on - strand, within IAI47_19705 at 169.728 kb on - strand, within IAI47_19705 at 169.764 kb on - strand, within IAI47_19705 at 169.764 kb on - strand, within IAI47_19705 at 169.764 kb on - strand, within IAI47_19705 at 169.799 kb on + strand, within IAI47_19705 at 169.799 kb on + strand, within IAI47_19705 at 169.799 kb on + strand, within IAI47_19705 at 169.799 kb on + strand, within IAI47_19705 at 169.847 kb on + strand, within IAI47_19705 at 169.848 kb on - strand, within IAI47_19705 at 169.848 kb on - strand, within IAI47_19705 at 169.848 kb on - strand, within IAI47_19705 at 169.864 kb on - strand, within IAI47_19705 at 169.864 kb on - strand, within IAI47_19705 at 169.899 kb on - strand, within IAI47_19705 at 169.949 kb on + strand, within IAI47_19705 at 169.949 kb on + strand, within IAI47_19705 at 169.950 kb on - strand, within IAI47_19705 at 169.984 kb on - strand, within IAI47_19705 at 170.048 kb on + strand, within IAI47_19705 at 170.048 kb on + strand, within IAI47_19705 at 170.048 kb on + strand, within IAI47_19705 at 170.048 kb on + strand, within IAI47_19705 at 170.049 kb on - strand, within IAI47_19705 at 170.049 kb on - strand, within IAI47_19705 at 170.079 kb on + strand, within IAI47_19705 at 170.079 kb on + strand, within IAI47_19705 at 170.079 kb on + strand, within IAI47_19705 at 170.080 kb on - strand, within IAI47_19705 at 170.080 kb on - strand, within IAI47_19705 at 170.080 kb on - strand, within IAI47_19705 at 170.082 kb on + strand, within IAI47_19705 at 170.082 kb on + strand, within IAI47_19705 at 170.082 kb on + strand, within IAI47_19705 at 170.123 kb on + strand, within IAI47_19705 at 170.133 kb on + strand, within IAI47_19705 at 170.134 kb on - strand, within IAI47_19705 at 170.171 kb on + strand, within IAI47_19705 at 170.172 kb on - strand, within IAI47_19705 at 170.172 kb on - strand, within IAI47_19705 at 170.219 kb on - strand, within IAI47_19705 at 170.237 kb on - strand, within IAI47_19705 at 170.237 kb on - strand, within IAI47_19705 at 170.237 kb on - strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.254 kb on + strand, within IAI47_19705 at 170.255 kb on - strand, within IAI47_19705 at 170.296 kb on + strand, within IAI47_19705 at 170.296 kb on + strand, within IAI47_19705 at 170.314 kb on + strand at 170.315 kb on - strand at 170.315 kb on - strand at 170.315 kb on - strand at 170.315 kb on - strand at 170.323 kb on + strand at 170.324 kb on - strand at 170.343 kb on + strand at 170.344 kb on - strand at 170.344 kb on - strand at 170.344 kb on - strand at 170.351 kb on + strand at 170.352 kb on - strand at 170.352 kb on - strand at 170.357 kb on - strand at 170.361 kb on + strand at 170.361 kb on + strand at 170.361 kb on + strand at 170.370 kb on + strand at 170.370 kb on + strand at 170.370 kb on + strand at 170.371 kb on - strand at 170.371 kb on - strand at 170.371 kb on - strand at 170.385 kb on + strand at 170.385 kb on + strand at 170.386 kb on - strand at 170.407 kb on + strand at 170.491 kb on + strand at 170.491 kb on + strand at 170.528 kb on - strand at 170.666 kb on + strand, within IAI47_19710 at 170.666 kb on + strand, within IAI47_19710 at 170.683 kb on + strand, within IAI47_19710 at 170.683 kb on + strand, within IAI47_19710 at 170.699 kb on + strand, within IAI47_19710 at 170.835 kb on + strand, within IAI47_19710 at 170.878 kb on + strand, within IAI47_19710 at 170.885 kb on + strand at 170.885 kb on + strand at 170.885 kb on + strand at 170.889 kb on + strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.890 kb on - strand at 170.977 kb on + strand, within IAI47_19715 at 170.996 kb on + strand, within IAI47_19715 at 170.996 kb on + strand, within IAI47_19715 at 170.996 kb on + strand, within IAI47_19715 at 170.997 kb on - strand, within IAI47_19715 at 171.055 kb on + strand, within IAI47_19715 at 171.056 kb on - strand, within IAI47_19715 at 171.067 kb on + strand, within IAI47_19715 at 171.124 kb on + strand, within IAI47_19715 at 171.140 kb on - strand, within IAI47_19715 at 171.140 kb on - strand, within IAI47_19715 at 171.141 kb on + strand, within IAI47_19715 at 171.142 kb on - strand, within IAI47_19715 at 171.187 kb on + strand, within IAI47_19715 at 171.187 kb on + strand, within IAI47_19715 at 171.188 kb on - strand, within IAI47_19715 at 171.188 kb on - strand, within IAI47_19715 at 171.226 kb on + strand, within IAI47_19715 at 171.249 kb on + strand, within IAI47_19715 at 171.249 kb on + strand, within IAI47_19715 at 171.250 kb on - strand, within IAI47_19715 at 171.250 kb on - strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.262 kb on + strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.263 kb on - strand, within IAI47_19715 at 171.265 kb on + strand, within IAI47_19715 at 171.265 kb on + strand, within IAI47_19715 at 171.266 kb on - strand, within IAI47_19715 at 171.266 kb on - strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.297 kb on + strand, within IAI47_19715 at 171.298 kb on - strand, within IAI47_19715 at 171.298 kb on - strand, within IAI47_19715 at 171.305 kb on + strand, within IAI47_19715 at 171.306 kb on - strand, within IAI47_19715 at 171.306 kb on - strand, within IAI47_19715 at 171.307 kb on + strand, within IAI47_19715 at 171.307 kb on + strand, within IAI47_19715 at 171.307 kb on + strand, within IAI47_19715 at 171.307 kb on + strand, within IAI47_19715 at 171.308 kb on - strand, within IAI47_19715 at 171.308 kb on - strand, within IAI47_19715 at 171.308 kb on - strand, within IAI47_19715 at 171.308 kb on - strand, within IAI47_19715 at 171.345 kb on + strand, within IAI47_19715 at 171.345 kb on + strand, within IAI47_19715 at 171.345 kb on + strand, within IAI47_19715 at 171.345 kb on + strand, within IAI47_19715 at 171.346 kb on - strand, within IAI47_19715 at 171.346 kb on - strand, within IAI47_19715
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 168,451 + IAI47_19700 0.68 +0.0 168,452 - IAI47_19700 0.68 +0.1 168,639 + IAI47_19700 0.84 -1.5 168,639 + IAI47_19700 0.84 +1.4 168,742 - -1.1 168,774 + +1.1 168,774 + +0.4 168,774 + +1.0 168,775 - -1.5 168,777 + +1.4 168,778 - +0.8 168,785 - -0.2 168,785 - -2.1 168,840 - -0.5 168,870 + +0.3 168,873 - -0.6 168,874 + +0.5 168,882 - +0.4 168,882 - -0.8 168,933 + +2.2 168,959 + +0.1 168,959 + +1.6 168,968 + -0.0 168,968 + -0.2 168,969 - -1.0 168,977 + +1.2 168,977 + -0.2 168,978 - -1.5 169,013 + +0.8 169,039 - +0.3 169,040 + -0.6 169,040 + -2.0 169,041 - +1.0 169,041 - +1.3 169,052 + -0.4 169,052 + -2.0 169,053 - -0.2 169,053 - +0.2 169,053 - +0.6 169,079 + -2.5 169,086 + +1.0 169,103 + -0.3 169,104 - -0.3 169,104 - +0.2 169,104 - +0.7 169,116 + -1.8 169,116 + +1.1 169,116 + -2.7 169,116 + -0.2 169,117 - +0.6 169,117 - -0.2 169,141 + +1.5 169,141 + -1.5 169,141 + -0.8 169,141 + -1.3 169,141 + +0.8 169,141 + -0.9 169,142 - +0.1 169,142 - -0.0 169,150 + -1.3 169,194 + +1.2 169,195 - +1.2 169,195 - +1.3 169,264 + -0.2 169,316 - -1.0 169,324 + +0.1 169,324 + -1.3 169,324 + +0.2 169,325 - +0.8 169,325 - +2.6 169,325 - +0.8 169,331 + -0.8 169,332 - -0.2 169,332 - +0.8 169,332 - -0.0 169,336 - +0.3 169,336 - -1.5 169,336 - +1.5 169,346 + -0.8 169,370 + +0.1 169,373 + -0.3 169,374 - -1.2 169,374 - +0.6 169,380 + -1.1 169,380 + -0.7 169,380 + +0.6 169,381 - +0.6 169,381 - +0.8 169,386 + -0.5 169,387 - +0.2 169,449 + +2.0 169,449 + +0.2 169,450 - +1.1 169,450 - +1.4 169,450 - -2.4 169,450 - +1.1 169,450 - +0.2 169,450 - -0.3 169,451 + +0.1 169,452 - +0.2 169,452 - -0.0 169,468 + -1.4 169,516 + -0.1 169,516 + -1.4 169,516 + -0.1 169,517 - +0.3 169,517 - +0.2 169,517 - -1.2 169,517 - -0.1 169,517 - -0.1 169,517 - +0.0 169,517 - +0.8 169,592 + IAI47_19705 0.16 +0.1 169,593 - IAI47_19705 0.16 -2.3 169,593 - IAI47_19705 0.16 +0.7 169,655 + IAI47_19705 0.22 -2.0 169,655 + IAI47_19705 0.22 -1.3 169,672 - IAI47_19705 0.24 +0.0 169,704 + IAI47_19705 0.27 -0.0 169,704 + IAI47_19705 0.27 +0.6 169,705 - IAI47_19705 0.27 +1.2 169,705 - IAI47_19705 0.27 +1.4 169,727 + IAI47_19705 0.30 +0.4 169,728 - IAI47_19705 0.30 -0.0 169,728 - IAI47_19705 0.30 +0.6 169,728 - IAI47_19705 0.30 +0.1 169,764 - IAI47_19705 0.34 +1.0 169,764 - IAI47_19705 0.34 -0.8 169,764 - IAI47_19705 0.34 -2.2 169,799 + IAI47_19705 0.37 -0.8 169,799 + IAI47_19705 0.37 -2.2 169,799 + IAI47_19705 0.37 +1.2 169,799 + IAI47_19705 0.37 -0.2 169,847 + IAI47_19705 0.42 -1.1 169,848 - IAI47_19705 0.42 +1.2 169,848 - IAI47_19705 0.42 -0.4 169,848 - IAI47_19705 0.42 +0.0 169,864 - IAI47_19705 0.44 -1.2 169,864 - IAI47_19705 0.44 -0.6 169,899 - IAI47_19705 0.47 -0.4 169,949 + IAI47_19705 0.53 +0.4 169,949 + IAI47_19705 0.53 +1.4 169,950 - IAI47_19705 0.53 -0.0 169,984 - IAI47_19705 0.56 +1.2 170,048 + IAI47_19705 0.63 -0.2 170,048 + IAI47_19705 0.63 -0.2 170,048 + IAI47_19705 0.63 +1.7 170,048 + IAI47_19705 0.63 -1.5 170,049 - IAI47_19705 0.63 -0.6 170,049 - IAI47_19705 0.63 +0.6 170,079 + IAI47_19705 0.66 +0.5 170,079 + IAI47_19705 0.66 -1.1 170,079 + IAI47_19705 0.66 +0.8 170,080 - IAI47_19705 0.66 +0.4 170,080 - IAI47_19705 0.66 -1.2 170,080 - IAI47_19705 0.66 -0.8 170,082 + IAI47_19705 0.66 +0.8 170,082 + IAI47_19705 0.66 +1.1 170,082 + IAI47_19705 0.66 -0.3 170,123 + IAI47_19705 0.70 +1.1 170,133 + IAI47_19705 0.72 -0.1 170,134 - IAI47_19705 0.72 -2.5 170,171 + IAI47_19705 0.75 +1.2 170,172 - IAI47_19705 0.76 +0.5 170,172 - IAI47_19705 0.76 +1.3 170,219 - IAI47_19705 0.80 -0.3 170,237 - IAI47_19705 0.82 +1.0 170,237 - IAI47_19705 0.82 +0.6 170,237 - IAI47_19705 0.82 -0.8 170,254 + IAI47_19705 0.84 +1.2 170,254 + IAI47_19705 0.84 -1.5 170,254 + IAI47_19705 0.84 +0.3 170,254 + IAI47_19705 0.84 +0.6 170,254 + IAI47_19705 0.84 +0.5 170,254 + IAI47_19705 0.84 -0.1 170,255 - IAI47_19705 0.84 -1.6 170,296 + IAI47_19705 0.88 -1.5 170,296 + IAI47_19705 0.88 -0.5 170,314 + -0.1 170,315 - -2.4 170,315 - -1.8 170,315 - -1.3 170,315 - +0.7 170,323 + +0.6 170,324 - +0.5 170,343 + -0.1 170,344 - -0.3 170,344 - +0.0 170,344 - +0.2 170,351 + +0.7 170,352 - +0.3 170,352 - +0.6 170,357 - -0.3 170,361 + -0.0 170,361 + +1.8 170,361 + -1.8 170,370 + -0.4 170,370 + -0.0 170,370 + -1.4 170,371 - -0.6 170,371 - +0.8 170,371 - +0.4 170,385 + -0.6 170,385 + +0.6 170,386 - +1.2 170,407 + -0.9 170,491 + -0.1 170,491 + -1.0 170,528 - -0.9 170,666 + IAI47_19710 0.22 +1.8 170,666 + IAI47_19710 0.22 -0.6 170,683 + IAI47_19710 0.28 +1.2 170,683 + IAI47_19710 0.28 -0.8 170,699 + IAI47_19710 0.33 +0.5 170,835 + IAI47_19710 0.75 -0.4 170,878 + IAI47_19710 0.89 +0.1 170,885 + -1.4 170,885 + +1.8 170,885 + -1.7 170,889 + +0.5 170,890 - -3.1 170,890 - +0.8 170,890 - +0.5 170,890 - +0.5 170,890 - +1.4 170,890 - -0.0 170,977 + IAI47_19715 0.13 +1.7 170,996 + IAI47_19715 0.16 -1.2 170,996 + IAI47_19715 0.16 +1.3 170,996 + IAI47_19715 0.16 -0.2 170,997 - IAI47_19715 0.17 +1.5 171,055 + IAI47_19715 0.28 +0.5 171,056 - IAI47_19715 0.28 -1.8 171,067 + IAI47_19715 0.30 -0.5 171,124 + IAI47_19715 0.41 -0.6 171,140 - IAI47_19715 0.44 +0.1 171,140 - IAI47_19715 0.44 +1.2 171,141 + IAI47_19715 0.44 -0.5 171,142 - IAI47_19715 0.44 -1.1 171,187 + IAI47_19715 0.53 -2.4 171,187 + IAI47_19715 0.53 -2.0 171,188 - IAI47_19715 0.53 -0.2 171,188 - IAI47_19715 0.53 +2.3 171,226 + IAI47_19715 0.60 +0.5 171,249 + IAI47_19715 0.64 -0.6 171,249 + IAI47_19715 0.64 -0.2 171,250 - IAI47_19715 0.65 -0.6 171,250 - IAI47_19715 0.65 -2.0 171,262 + IAI47_19715 0.67 -0.9 171,262 + IAI47_19715 0.67 -0.4 171,262 + IAI47_19715 0.67 +1.2 171,262 + IAI47_19715 0.67 +1.6 171,262 + IAI47_19715 0.67 +0.2 171,262 + IAI47_19715 0.67 +2.6 171,263 - IAI47_19715 0.67 -0.9 171,263 - IAI47_19715 0.67 +1.5 171,263 - IAI47_19715 0.67 -0.8 171,263 - IAI47_19715 0.67 -0.6 171,263 - IAI47_19715 0.67 -1.2 171,263 - IAI47_19715 0.67 +3.3 171,263 - IAI47_19715 0.67 -3.3 171,263 - IAI47_19715 0.67 -0.5 171,265 + IAI47_19715 0.67 +1.1 171,265 + IAI47_19715 0.67 -0.1 171,266 - IAI47_19715 0.68 -1.5 171,266 - IAI47_19715 0.68 +0.2 171,297 + IAI47_19715 0.73 -0.1 171,297 + IAI47_19715 0.73 -1.7 171,297 + IAI47_19715 0.73 -0.7 171,297 + IAI47_19715 0.73 +4.0 171,297 + IAI47_19715 0.73 +0.5 171,298 - IAI47_19715 0.74 -1.5 171,298 - IAI47_19715 0.74 -2.2 171,305 + IAI47_19715 0.75 -0.0 171,306 - IAI47_19715 0.75 +0.1 171,306 - IAI47_19715 0.75 +1.3 171,307 + IAI47_19715 0.75 -0.2 171,307 + IAI47_19715 0.75 +0.5 171,307 + IAI47_19715 0.75 -0.8 171,307 + IAI47_19715 0.75 -1.5 171,308 - IAI47_19715 0.76 -0.1 171,308 - IAI47_19715 0.76 +1.4 171,308 - IAI47_19715 0.76 -0.0 171,308 - IAI47_19715 0.76 -0.5 171,345 + IAI47_19715 0.83 -0.6 171,345 + IAI47_19715 0.83 +0.2 171,345 + IAI47_19715 0.83 -1.0 171,345 + IAI47_19715 0.83 +0.4 171,346 - IAI47_19715 0.83 -0.1 171,346 - IAI47_19715 0.83 -0.9
Or see this region's nucleotide sequence