Strain Fitness in Pantoea sp. MT58 around IAI47_10890

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
2,295,828	-				-0.8
2,295,833	-				-1.2
2,295,833	-				+1.8
2,295,833	-				-2.0
2,295,833	-				+0.2
2,295,882	+				+0.6
2,295,883	-				+0.8
2,295,893	+				+1.4
2,295,894	-				-1.4
2,295,906	-				+0.0
2,295,908	+				+0.4
2,295,908	+				+1.4
2,295,915	-				-1.2
2,295,915	-				+0.5
2,295,915	-				-0.1
2,295,957	-				+0.8
2,295,973	-				-0.2
2,295,973	-				-0.8
2,295,978	+				+1.2
2,295,992	+				+1.6
2,296,021	-				+0.5
2,296,026	+				+1.8
2,296,032	-				+1.5
2,296,072	+				+0.6
2,296,088	-				+0.9
2,296,088	-				+0.2
2,296,206	+				-0.5
2,296,206	+				+0.4
2,296,206	+				+1.2
2,296,239	+		IAI47_10885	0.16	-0.2
2,296,255	+		IAI47_10885	0.20	+0.2
2,296,255	+		IAI47_10885	0.20	-0.4
2,296,255	+		IAI47_10885	0.20	-0.7
2,296,255	+		IAI47_10885	0.20	-0.5
2,296,255	+		IAI47_10885	0.20	-2.0
2,296,255	+		IAI47_10885	0.20	-0.4
2,296,256	-		IAI47_10885	0.20	-0.3
2,296,256	-		IAI47_10885	0.20	-0.0
2,296,256	-		IAI47_10885	0.20	+0.4
2,296,256	-		IAI47_10885	0.20	+0.1
2,296,257	+				+0.6
2,296,257	+		IAI47_10885	0.20	+0.2
2,296,258	-		IAI47_10885	0.21	-0.9
2,296,304	+		IAI47_10885	0.32	+1.7
2,296,304	+		IAI47_10885	0.32	+0.8
2,296,304	+		IAI47_10885	0.32	+1.4
2,296,304	+		IAI47_10885	0.32	+0.4
2,296,304	+		IAI47_10885	0.32	+1.1
2,296,305	-		IAI47_10885	0.32	+1.5
2,296,305	-		IAI47_10885	0.32	+0.8
2,296,305	-		IAI47_10885	0.32	-0.0
2,296,305	-		IAI47_10885	0.32	-2.0
2,296,305	-		IAI47_10885	0.32	-0.5
2,296,305	-		IAI47_10885	0.32	-2.0
2,296,372	+		IAI47_10885	0.49	-2.5
2,296,373	-		IAI47_10885	0.49	+0.9
2,296,373	-		IAI47_10885	0.49	-0.2
2,296,373	-		IAI47_10885	0.49	-0.5
2,296,390	-		IAI47_10885	0.53	+0.8
2,296,551	+				+0.2
2,296,552	-				+1.0
2,296,571	+				-0.2
2,296,577	-				+1.0
2,296,577	-				+0.6
2,296,577	-				-1.4
2,296,613	+				+0.2
2,296,614	-				+0.8
2,296,618	+				-2.4
2,296,618	+				+0.6
2,296,618	+				+0.5
2,296,618	+				+0.8
2,296,619	-				+0.4
2,296,619	-				-1.5
2,296,624	+				-1.8
2,296,624	+				-2.8
2,296,624	+				-0.8
2,296,624	+				-1.7
2,296,625	-				+1.0
2,296,625	-				+0.4
2,296,663	+				-1.9
2,296,663	+				-2.1
2,296,664	-				-2.8
2,296,664	-				-1.3
2,296,664	-				+0.8
2,296,664	-				-0.8
2,296,680	+				-2.4
2,296,680	+				-0.2
2,296,681	-				-0.5
2,296,692	-				-0.7
2,296,754	+				-0.2
2,296,754	+				-1.3
2,296,755	-				-1.8
2,296,755	-				+0.8
2,296,755	-				-2.0
2,296,755	-				-2.5
2,296,755	-				-0.4
2,296,755	-				-3.5
2,296,755	-				-1.4
2,296,755	-				-0.2
2,296,782	+				-0.1
2,296,796	+				-1.2
2,296,925	+		IAI47_10890	0.10	-1.5
2,296,925	+		IAI47_10890	0.10	-0.7
2,296,926	-		IAI47_10890	0.10	-0.5
2,296,926	-		IAI47_10890	0.10	-2.8
2,296,999	+		IAI47_10890	0.13	-0.6
2,296,999	+		IAI47_10890	0.13	-0.4
2,296,999	+		IAI47_10890	0.13	-1.3
2,297,000	-		IAI47_10890	0.13	-0.1
2,297,000	-		IAI47_10890	0.13	-0.6
2,297,000	-		IAI47_10890	0.13	-1.7
2,297,039	+		IAI47_10890	0.14	-1.4
2,297,051	+		IAI47_10890	0.14	+0.8
2,297,052	-		IAI47_10890	0.14	-1.5
2,297,085	+		IAI47_10890	0.15	-0.3
2,297,085	+		IAI47_10890	0.15	-0.8
2,297,085	+		IAI47_10890	0.15	-2.0
2,297,086	-		IAI47_10890	0.16	-0.7
2,297,086	-		IAI47_10890	0.16	-2.2
2,297,113	-		IAI47_10890	0.16	-0.7
2,297,113	-		IAI47_10890	0.16	+1.4
2,297,251	+		IAI47_10890	0.21	-1.1
2,297,267	+		IAI47_10890	0.21	-2.0
2,297,268	-		IAI47_10890	0.21	-1.5
2,297,268	-		IAI47_10890	0.21	-0.7
2,297,308	-		IAI47_10890	0.23	-1.8
2,297,428	-		IAI47_10890	0.27	-0.2
2,297,440	+		IAI47_10890	0.27	-0.4
2,297,440	+		IAI47_10890	0.27	+1.1
2,297,440	+		IAI47_10890	0.27	-2.1
2,297,441	-		IAI47_10890	0.27	-0.6
2,297,510	+		IAI47_10890	0.29	+0.1
2,297,510	+		IAI47_10890	0.29	+1.0
2,297,510	+		IAI47_10890	0.29	+0.1
2,297,510	+		IAI47_10890	0.29	-0.7
2,297,510	+		IAI47_10890	0.29	+0.1
2,297,511	-		IAI47_10890	0.29	-0.1
2,297,511	-		IAI47_10890	0.29	+0.2
2,297,511	-		IAI47_10890	0.29	-1.2
2,297,511	-		IAI47_10890	0.29	-0.2
2,297,511	-		IAI47_10890	0.29	-4.2
2,297,555	+		IAI47_10890	0.31	-0.2
2,297,556	-		IAI47_10890	0.31	+0.0
2,297,556	-		IAI47_10890	0.31	-0.1
2,297,556	-		IAI47_10890	0.31	-1.6
2,297,567	+		IAI47_10890	0.31	-1.5
2,297,599	+		IAI47_10890	0.32	-3.0
2,297,599	+		IAI47_10890	0.32	-2.9
2,297,637	+		IAI47_10890	0.34	-0.2
2,297,668	+		IAI47_10890	0.35	-1.0
2,297,668	+		IAI47_10890	0.35	+0.5
2,297,668	+		IAI47_10890	0.35	-1.0
2,297,687	+		IAI47_10890	0.35	-0.4
2,297,687	+		IAI47_10890	0.35	-2.3
2,297,687	+		IAI47_10890	0.35	-1.5
2,297,688	-		IAI47_10890	0.35	-1.1
2,297,688	-		IAI47_10890	0.35	-2.8
2,297,688	-		IAI47_10890	0.35	-1.5
2,297,728	-		IAI47_10890	0.37	-0.1
2,297,728	-		IAI47_10890	0.37	-2.3
2,297,776	+		IAI47_10890	0.38	-1.3
2,297,777	-		IAI47_10890	0.38	+0.2
2,297,777	-		IAI47_10890	0.38	-2.5
2,297,777	-		IAI47_10890	0.38	+0.1
2,297,777	-		IAI47_10890	0.38	-0.4
2,297,844	+		IAI47_10890	0.40	-1.2
2,297,844	+		IAI47_10890	0.40	-2.7
2,297,845	-		IAI47_10890	0.40	-1.5
2,297,845	-		IAI47_10890	0.40	-2.7
2,297,869	-		IAI47_10890	0.41	+0.4
2,297,911	-		IAI47_10890	0.43	+0.8
2,297,931	+		IAI47_10890	0.43	-2.2
2,297,931	+		IAI47_10890	0.43	-0.6
2,298,031	-		IAI47_10890	0.46	-0.8
2,298,063	+		IAI47_10890	0.48	-2.2
2,298,141	+		IAI47_10890	0.50	-0.6
2,298,141	+		IAI47_10890	0.50	-1.7
2,298,141	+		IAI47_10890	0.50	-1.0
2,298,141	+		IAI47_10890	0.50	-1.1
2,298,142	-		IAI47_10890	0.50	-0.8
2,298,142	-		IAI47_10890	0.50	-0.0
2,298,143	+		IAI47_10890	0.50	+1.7
2,298,144	-		IAI47_10890	0.50	-1.0
2,298,144	-		IAI47_10890	0.50	-1.8
2,298,144	-		IAI47_10890	0.50	-0.9
2,298,144	-		IAI47_10890	0.50	-0.9
2,298,261	+		IAI47_10890	0.54	-3.5
2,298,261	+		IAI47_10890	0.54	-1.1
2,298,261	+		IAI47_10890	0.54	-0.5
2,298,261	+		IAI47_10890	0.54	-2.2
2,298,261	+		IAI47_10890	0.54	-0.6
2,298,262	-		IAI47_10890	0.54	+0.5
2,298,262	-		IAI47_10890	0.54	-1.4
2,298,262	-		IAI47_10890	0.54	-1.5
2,298,262	-		IAI47_10890	0.54	+0.5
2,298,262	-		IAI47_10890	0.54	+0.3
2,298,360	+		IAI47_10890	0.57	-0.8
2,298,360	+		IAI47_10890	0.57	+0.5
2,298,360	+		IAI47_10890	0.57	-0.1
2,298,360	+		IAI47_10890	0.57	-1.2
2,298,360	+		IAI47_10890	0.57	-0.7
2,298,361	-		IAI47_10890	0.57	+0.8
2,298,361	-		IAI47_10890	0.57	-0.9
2,298,361	-		IAI47_10890	0.57	-1.5
2,298,361	-		IAI47_10890	0.57	-0.2
2,298,361	-		IAI47_10890	0.57	+0.5
2,298,361	-		IAI47_10890	0.57	-0.6
2,298,361	-		IAI47_10890	0.57	-0.5
2,298,362	+		IAI47_10890	0.57	+0.6
2,298,362	+		IAI47_10890	0.57	-1.7
2,298,362	+		IAI47_10890	0.57	-0.3
2,298,362	+		IAI47_10890	0.57	-2.0
2,298,362	+		IAI47_10890	0.57	-0.9
2,298,362	+		IAI47_10890	0.57	-1.2
2,298,362	+		IAI47_10890	0.57	-1.2
2,298,362	+		IAI47_10890	0.57	-2.8
2,298,362	+		IAI47_10890	0.57	-0.0
2,298,362	+		IAI47_10890	0.57	+0.4
2,298,362	+		IAI47_10890	0.57	+0.6
2,298,363	-		IAI47_10890	0.57	+0.4
2,298,363	-		IAI47_10890	0.57	+0.2
2,298,363	-		IAI47_10890	0.57	+0.2
2,298,363	-		IAI47_10890	0.57	-3.1
2,298,363	-		IAI47_10890	0.57	-0.4
2,298,459	+		IAI47_10890	0.60	-1.4
2,298,459	+		IAI47_10890	0.60	-1.0
2,298,460	-		IAI47_10890	0.61	-1.0
2,298,460	-		IAI47_10890	0.61	-1.1
2,298,468	+		IAI47_10890	0.61	-3.1
2,298,470	+		IAI47_10890	0.61	-1.8
2,298,470	+		IAI47_10890	0.61	+0.6
2,298,470	+		IAI47_10890	0.61	-1.2
2,298,471	-		IAI47_10890	0.61	-0.8
2,298,471	-		IAI47_10890	0.61	-0.2
2,298,510	-		IAI47_10890	0.62	-2.0
2,298,510	-		IAI47_10890	0.62	-1.7
2,298,618	+		IAI47_10890	0.66	+0.1
2,298,618	+		IAI47_10890	0.66	-0.3
2,298,618	+		IAI47_10890	0.66	-0.1
2,298,619	-		IAI47_10890	0.66	-1.5
2,298,619	-		IAI47_10890	0.66	+0.4
2,298,619	-		IAI47_10890	0.66	+0.2
2,298,619	-		IAI47_10890	0.66	+1.8
2,298,646	+		IAI47_10890	0.67	-1.1
2,298,654	+		IAI47_10890	0.67	-1.0
2,298,655	-		IAI47_10890	0.67	-0.5
2,298,658	+		IAI47_10890	0.67	-1.4
2,298,658	+		IAI47_10890	0.67	-0.7
2,298,658	+		IAI47_10890	0.67	-0.4
2,298,658	+		IAI47_10890	0.67	-0.9
2,298,659	-		IAI47_10890	0.67	+1.0
2,298,684	+		IAI47_10890	0.68	-0.7
2,298,684	+		IAI47_10890	0.68	+0.4
2,298,684	+		IAI47_10890	0.68	-0.4
2,298,685	-		IAI47_10890	0.68	+0.1
2,298,685	-		IAI47_10890	0.68	-1.5
2,298,685	-		IAI47_10890	0.68	-0.2
2,298,706	+		IAI47_10890	0.69	+0.1
2,298,706	+		IAI47_10890	0.69	+0.5
2,298,711	+		IAI47_10890	0.69	-0.2
2,298,712	-		IAI47_10890	0.69	-0.1
2,298,712	-		IAI47_10890	0.69	-0.2
2,298,791	+		IAI47_10890	0.71	+1.4
2,298,791	+		IAI47_10890	0.71	-0.8
2,298,791	+		IAI47_10890	0.71	-2.3
2,298,791	+		IAI47_10890	0.71	+1.4
2,298,792	-		IAI47_10890	0.71	-1.9
2,298,792	-		IAI47_10890	0.71	+0.6
2,298,795	+		IAI47_10890	0.71	-0.5
2,298,795	+		IAI47_10890	0.71	-0.3
2,298,795	+		IAI47_10890	0.71	+0.6
2,298,795	+		IAI47_10890	0.71	-1.6
2,298,795	+		IAI47_10890	0.71	+1.1
2,298,795	+		IAI47_10890	0.71	+0.1
2,298,796	-		IAI47_10890	0.72	-2.5
2,298,796	-		IAI47_10890	0.72	-0.7
2,298,835	-		IAI47_10890	0.73	-0.8
2,298,855	+		IAI47_10890	0.73	-0.6
2,298,856	-		IAI47_10890	0.73	+0.7
2,298,912	+		IAI47_10890	0.75	-0.9
2,298,941	+		IAI47_10890	0.76	-0.4
2,298,942	-		IAI47_10890	0.76	+3.2
2,299,025	+		IAI47_10890	0.79	-0.7
2,299,025	+		IAI47_10890	0.79	-1.7
2,299,092	+		IAI47_10890	0.81	-0.3
2,299,092	+		IAI47_10890	0.81	-1.2
2,299,093	-		IAI47_10890	0.81	-0.6
2,299,093	-		IAI47_10890	0.81	-1.7
2,299,101	+		IAI47_10890	0.81	-0.2
2,299,188	+		IAI47_10890	0.84	+1.0
2,299,188	+		IAI47_10890	0.84	-0.1
2,299,189	-		IAI47_10890	0.84	-1.2
2,299,219	-		IAI47_10890	0.85	-0.4
2,299,229	-		IAI47_10890	0.86	-1.2
2,299,285	-		IAI47_10890	0.88	-0.4
2,299,285	-		IAI47_10890	0.88	-1.8
2,299,285	-		IAI47_10890	0.88	-0.2
2,299,285	-		IAI47_10890	0.88	-1.2
2,299,324	-		IAI47_10890	0.89	-3.6
2,299,327	-		IAI47_10890	0.89	+0.2
2,299,327	-		IAI47_10890	0.89	-1.0
2,299,327	-		IAI47_10890	0.89	-2.5
2,299,349	+		IAI47_10890	0.90	-2.0
2,299,349	+		IAI47_10890	0.90	-0.8
2,299,349	+		IAI47_10890	0.90	+0.5
2,299,350	-		IAI47_10890	0.90	-1.2
2,299,359	+		IAI47_10890	0.90	-0.9
2,299,359	+		IAI47_10890	0.90	-1.4
2,299,359	+		IAI47_10890	0.90	-0.2
2,299,359	+		IAI47_10890	0.90	-1.8
2,299,360	-				+1.1
2,299,360	-				-0.9
2,299,360	-				+1.5
2,299,360	-				-0.2
2,299,360	-				+0.6
2,299,360	-				-0.6
2,299,360	-				-0.4
2,299,360	-				-0.3
2,299,360	-				-2.2
2,299,360	-				-0.4
2,299,523	+				+0.8
2,299,523	+				-1.1
2,299,523	+				-0.8
2,299,524	-				-1.2
2,299,524	-				-4.1
2,299,533	+				-0.0
2,299,562	+				-0.5
2,299,562	+				-0.6
2,299,562	+				-0.8
2,299,562	+				-0.2
2,299,562	+				-0.6
2,299,562	+				-1.3
2,299,563	-				-1.9
2,299,584	+				+0.6
2,299,688	+				-0.1
2,299,689	-				-1.1
2,299,703	-				+0.4
2,299,704	+				-2.4
2,299,705	-				+1.6
2,299,705	-				-0.8
2,299,725	+				-0.2
2,299,730	+				-0.6
2,299,731	-				-0.8
2,299,792	-				+1.5
2,299,792	-				+0.0
2,299,805	+				+3.4
2,299,805	+				+0.8
2,299,806	-				-0.2
2,299,815	+				-0.8
2,299,816	-				-1.1
2,299,851	+				+0.2
2,299,852	-				+1.1
2,299,852	-				-0.2
2,299,862	+				-1.2
2,299,862	+				-0.8
2,299,895	-				+1.4
2,299,903	-				-0.8
2,299,911	+				-0.6
2,299,911	+				+2.6
2,299,911	+				+1.0
2,299,912	-				+0.1
2,299,912	-				-0.8
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2,299,956	+				-1.3
2,299,976	-				+1.2
2,300,004	+		IAI47_10895	0.12	-1.4
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2,300,304	-		IAI47_10895	0.39	-1.0
2,300,304	-				+0.8
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2,300,403	-		IAI47_10895	0.47	-1.0
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2,300,589	-		IAI47_10895	0.64	+1.6
2,300,601	+		IAI47_10895	0.65	+0.2
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2,300,607	+		IAI47_10895	0.66	+0.7
2,300,608	-		IAI47_10895	0.66	+3.1
2,300,631	+		IAI47_10895	0.68	+0.8
2,300,631	+		IAI47_10895	0.68	-0.8
2,300,631	+		IAI47_10895	0.68	+0.6
2,300,631	+		IAI47_10895	0.68	+0.1
2,300,632	-		IAI47_10895	0.68	-0.8
2,300,632	-		IAI47_10895	0.68	+0.1
2,300,632	-		IAI47_10895	0.68	-1.3