Strain Fitness in Pantoea sp. MT58 around IAI47_10600

Experiment: Ying_Others16 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep C; time point 1
2,240,108	+		IAI47_10590	0.34	-1.5
2,240,242	+		IAI47_10590	0.69	-1.1
2,240,242	+		IAI47_10590	0.69	-1.0
2,240,242	+		IAI47_10590	0.69	-2.2
2,240,242	+		IAI47_10590	0.69	+1.1
2,240,285	+		IAI47_10590	0.80	+0.3
2,240,285	+		IAI47_10590	0.80	-1.9
2,240,285	+		IAI47_10590	0.80	-0.2
2,240,286	-		IAI47_10590	0.80	-0.3
2,240,300	-		IAI47_10590	0.84	-0.6
2,240,300	-		IAI47_10590	0.84	+0.1
2,240,300	-		IAI47_10590	0.84	-0.0
2,240,300	-		IAI47_10590	0.84	-0.9
2,240,300	-		IAI47_10590	0.84	-1.7
2,240,342	+				+2.6
2,240,343	-				-0.4
2,240,345	-				-2.7
2,240,345	-				+0.8
2,240,384	+				+0.5
2,240,385	-				-0.7
2,240,443	+				-1.1
2,240,444	-				+0.6
2,240,455	+				+0.2
2,240,455	+				-2.4
2,240,456	-				+0.2
2,240,456	-				+1.0
2,240,456	-				-0.4
2,240,499	-				+0.3
2,240,499	-				-0.2
2,240,528	+				+1.8
2,240,529	-				+0.1
2,240,529	-				-0.8
2,240,529	-				-1.1
2,240,543	-				-2.9
2,240,579	+				-0.0
2,240,579	+				+1.4
2,240,579	+				-1.2
2,240,579	+				-0.7
2,240,580	-				+0.0
2,240,580	-				+0.6
2,240,593	-				-1.4
2,240,596	+				-0.0
2,240,596	+				+0.2
2,240,597	-				-2.4
2,240,597	-				+0.5
2,240,597	-				-2.4
2,240,597	-				-1.4
2,240,597	-				+0.2
2,240,611	+				+0.0
2,240,613	+				+0.8
2,240,613	+				-0.1
2,240,618	+				+1.2
2,240,618	+				+0.2
2,240,631	-				-1.2
2,240,705	-				+0.5
2,240,733	+				+0.2
2,240,734	-				+1.5
2,240,784	-		IAI47_10595	0.20	+1.5
2,240,805	-		IAI47_10595	0.28	+1.1
2,240,838	+		IAI47_10595	0.41	-0.1
2,240,839	-		IAI47_10595	0.42	+0.8
2,240,848	+		IAI47_10595	0.45	-1.5
2,240,871	-		IAI47_10595	0.54	-2.9
2,240,871	-		IAI47_10595	0.54	-0.2
2,240,871	-		IAI47_10595	0.54	+1.2
2,240,893	+		IAI47_10595	0.63	+0.1
2,240,894	-		IAI47_10595	0.63	-0.0
2,240,919	+		IAI47_10595	0.73	-0.4
2,240,920	-		IAI47_10595	0.74	-1.0
2,240,920	-		IAI47_10595	0.74	-0.1
2,240,922	+		IAI47_10595	0.75	+2.8
2,240,922	+		IAI47_10595	0.75	+0.9
2,240,922	+		IAI47_10595	0.75	-0.2
2,240,922	+		IAI47_10595	0.75	+0.2
2,240,922	+		IAI47_10595	0.75	-0.2
2,240,923	-		IAI47_10595	0.75	+0.1
2,240,923	-		IAI47_10595	0.75	+0.4
2,240,953	+		IAI47_10595	0.87	-0.5
2,240,954	-		IAI47_10595	0.87	+2.6
2,240,954	-		IAI47_10595	0.87	-1.2
2,240,954	-		IAI47_10595	0.87	+2.0
2,240,955	+		IAI47_10595	0.88	-0.4
2,240,955	+		IAI47_10595	0.88	-0.5
2,240,955	+		IAI47_10595	0.88	+2.6
2,240,956	-		IAI47_10595	0.88	+0.5
2,240,956	-		IAI47_10595	0.88	+1.0
2,240,956	-		IAI47_10595	0.88	+0.6
2,240,958	+		IAI47_10595	0.89	+1.2
2,240,958	+		IAI47_10595	0.89	+0.0
2,240,958	+		IAI47_10595	0.89	+0.2
2,240,958	+		IAI47_10595	0.89	+0.8
2,240,958	+		IAI47_10595	0.89	+0.4
2,240,958	+		IAI47_10595	0.89	+1.3
2,240,959	-		IAI47_10595	0.89	-1.2
2,240,959	-		IAI47_10595	0.89	+0.8
2,240,962	+				+0.5
2,240,962	+				+0.8
2,240,962	+				-0.7
2,240,963	-				-0.4
2,240,983	+				+1.0
2,240,983	+				+1.0
2,241,094	+				+0.3
2,241,094	+				-1.0
2,241,144	-		IAI47_10600	0.23	+2.0
2,241,203	+		IAI47_10600	0.49	-2.3
2,241,203	+		IAI47_10600	0.49	-0.2
2,241,203	+		IAI47_10600	0.49	+1.4
2,241,204	-		IAI47_10600	0.49	+2.4
2,241,263	+		IAI47_10600	0.76	-0.1
2,241,263	+		IAI47_10600	0.76	-1.6
2,241,263	+		IAI47_10600	0.76	-1.3
2,241,263	+		IAI47_10600	0.76	+0.8
2,241,263	+		IAI47_10600	0.76	-0.5
2,241,264	-		IAI47_10600	0.76	+0.8
2,241,264	-		IAI47_10600	0.76	+2.2
2,241,264	-		IAI47_10600	0.76	-0.7
2,241,264	-		IAI47_10600	0.76	-0.2
2,241,264	-		IAI47_10600	0.76	+0.9
2,241,264	-		IAI47_10600	0.76	+0.2
2,241,264	-		IAI47_10600	0.76	-2.5
2,241,304	+				-0.9
2,241,338	+				+0.7
2,241,338	+				+0.7
2,241,338	+				-0.3
2,241,338	+				-1.1
2,241,339	-				+1.8
2,241,339	-				-2.7
2,241,339	-				-0.5
2,241,339	-				+1.1
2,241,339	-				-0.8
2,241,339	-				-0.8
2,241,339	-				-0.2
2,241,351	+				+1.5
2,241,351	+				+0.5
2,241,351	+				-2.2
2,241,352	-				+0.5
2,241,352	-				-0.2
2,241,352	-				+0.8
2,241,382	+				+1.8
2,241,382	+				+2.4
2,241,383	-				-2.2
2,241,383	-				-0.5
2,241,383	-				-1.2
2,241,383	-				-0.6
2,241,461	-				+2.1
2,241,461	-				+0.5
2,241,461	-				-1.8
2,241,587	-				+0.3
2,241,595	-				-0.5
2,241,632	+				+0.2
2,241,644	+				+0.0
2,241,725	+				+1.0
2,241,726	-				+1.5
2,241,736	+				+0.1
2,241,737	-				+0.5
2,241,737	-				-0.4
2,241,821	-				+0.7
2,241,849	+				+0.1
2,241,849	+				+0.1
2,241,850	-				+0.4
2,241,850	-				-0.4
2,241,880	-				-1.5
2,241,880	-				-0.7
2,241,880	-				-0.1
2,241,901	+		IAI47_10605	0.15	-1.9
2,241,906	+		IAI47_10605	0.17	+0.0
2,241,996	+		IAI47_10605	0.52	-0.6
2,241,996	+		IAI47_10605	0.52	+1.8
2,241,997	-		IAI47_10605	0.52	-1.5
2,242,046	+		IAI47_10605	0.71	-0.1
2,242,046	+		IAI47_10605	0.71	+0.1
2,242,046	+		IAI47_10605	0.71	-1.2
2,242,046	+		IAI47_10605	0.71	-0.9
2,242,047	-		IAI47_10605	0.72	-1.2
2,242,047	-		IAI47_10605	0.72	-2.4
2,242,047	-		IAI47_10605	0.72	-0.2
2,242,047	-		IAI47_10605	0.72	+1.0
2,242,050	+		IAI47_10605	0.73	-0.6
2,242,051	-		IAI47_10605	0.73	+1.2
2,242,051	-		IAI47_10605	0.73	+0.1
2,242,051	-		IAI47_10605	0.73	-2.0
2,242,051	-		IAI47_10605	0.73	+0.9
2,242,051	-		IAI47_10605	0.73	+0.9
2,242,051	-		IAI47_10605	0.73	-1.8
2,242,059	+		IAI47_10605	0.76	-0.8
2,242,059	+		IAI47_10605	0.76	+0.8
2,242,059	+		IAI47_10605	0.76	+0.8
2,242,059	+		IAI47_10605	0.76	+0.7
2,242,063	+		IAI47_10605	0.78	+1.0
2,242,063	+		IAI47_10605	0.78	+0.5
2,242,125	+				-0.9
2,242,133	+				+1.0
2,242,133	+				+1.2
2,242,133	+				-0.8
2,242,133	+				+1.0
2,242,133	+				-2.4
2,242,133	+				-2.6
2,242,133	+				+0.5
2,242,133	+				-3.1
2,242,134	-				+0.8
2,242,136	-				+0.5
2,242,136	-				+1.1
2,242,160	+				-0.0
2,242,179	-				-0.5
2,242,193	+				-1.4
2,242,194	-				+0.6
2,242,194	-				+1.3
2,242,214	+				+0.8
2,242,214	+				+1.5
2,242,214	+				-0.4
2,242,214	+				+1.1
2,242,214	+				+0.5
2,242,214	+				-1.2
2,242,215	-				-0.2
2,242,215	-				-1.0
2,242,215	-				-0.8
2,242,215	-				-0.6
2,242,215	-				-0.1
2,242,236	+				-0.2
2,242,237	-				+0.5
2,242,237	-				-0.5
2,242,253	+				-0.1
2,242,260	+				-0.2
2,242,260	+				+0.0
2,242,261	-				-0.8
2,242,261	-				+1.6
2,242,261	-				-0.3
2,242,261	-				-1.7
2,242,262	+				+0.4
2,242,262	+				-1.8
2,242,262	+				+0.2
2,242,262	+				+0.6
2,242,262	+				+1.4
2,242,262	+				+0.9
2,242,263	-				+0.2
2,242,263	-				+0.2
2,242,263	-				-1.7
2,242,263	-				+0.2
2,242,263	-				+1.4
2,242,263	-				+0.6
2,242,279	+				-0.7
2,242,280	-				+0.2
2,242,280	-				-0.5
2,242,302	-				+0.0