Strain Fitness in Pantoea sp. MT58 around IAI47_02330

Experiment: Ying_Others16 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02325 and IAI47_02330 are separated by 491 nucleotidesIAI47_02330 and IAI47_02335 are separated by 82 nucleotidesIAI47_02335 and IAI47_02340 are separated by 221 nucleotides IAI47_02325: IAI47_02325 - gamma carbonic anhydrase family protein, at 479,464 to 480,018 _02325 IAI47_02330: IAI47_02330 - 16S ribosomal RNA, at 480,510 to 482,056 _02330 IAI47_02335: IAI47_02335 - tRNA-Glu, at 482,139 to 482,213 _02335 IAI47_02340: IAI47_02340 - 23S ribosomal RNA, at 482,435 to 485,369 _02340 Position (kb) 480 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.516 kb on + strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.517 kb on - strandat 479.532 kb on - strand, within IAI47_02325at 479.532 kb on - strand, within IAI47_02325at 479.536 kb on + strand, within IAI47_02325at 479.537 kb on - strand, within IAI47_02325at 479.537 kb on - strand, within IAI47_02325at 479.559 kb on + strand, within IAI47_02325at 479.560 kb on - strand, within IAI47_02325at 479.594 kb on + strand, within IAI47_02325at 479.594 kb on + strand, within IAI47_02325at 479.594 kb on + strand, within IAI47_02325at 479.595 kb on - strand, within IAI47_02325at 479.595 kb on - strand, within IAI47_02325at 479.595 kb on - strand, within IAI47_02325at 479.595 kb on - strand, within IAI47_02325at 479.595 kb on - strand, within IAI47_02325at 479.595 kb on - strand, within IAI47_02325at 479.600 kb on + strand, within IAI47_02325at 479.600 kb on + strand, within IAI47_02325at 479.601 kb on - strand, within IAI47_02325at 479.601 kb on - strand, within IAI47_02325at 479.619 kb on + strand, within IAI47_02325at 479.665 kb on + strand, within IAI47_02325at 479.665 kb on + strand, within IAI47_02325at 479.666 kb on - strand, within IAI47_02325at 479.666 kb on - strand, within IAI47_02325at 479.668 kb on + strand, within IAI47_02325at 479.668 kb on + strand, within IAI47_02325at 479.668 kb on + strand, within IAI47_02325at 479.668 kb on + strand, within IAI47_02325at 479.669 kb on - strand, within IAI47_02325at 479.669 kb on - strand, within IAI47_02325at 479.669 kb on - strand, within IAI47_02325at 479.669 kb on - strand, within IAI47_02325at 479.669 kb on - strand, within IAI47_02325at 479.669 kb on - strand, within IAI47_02325at 479.671 kb on + strand, within IAI47_02325at 479.671 kb on + strand, within IAI47_02325at 479.671 kb on + strand, within IAI47_02325at 479.671 kb on + strand, within IAI47_02325at 479.672 kb on - strand, within IAI47_02325at 479.672 kb on - strand, within IAI47_02325at 479.672 kb on - strand, within IAI47_02325at 479.724 kb on + strand, within IAI47_02325at 479.724 kb on + strand, within IAI47_02325at 479.724 kb on + strand, within IAI47_02325at 479.724 kb on + strand, within IAI47_02325at 479.724 kb on + strand, within IAI47_02325at 479.725 kb on - strand, within IAI47_02325at 479.725 kb on - strand, within IAI47_02325at 479.725 kb on - strand, within IAI47_02325at 479.772 kb on + strand, within IAI47_02325at 479.772 kb on + strand, within IAI47_02325at 479.772 kb on + strand, within IAI47_02325at 479.773 kb on - strand, within IAI47_02325at 479.775 kb on + strand, within IAI47_02325at 479.775 kb on + strand, within IAI47_02325at 479.775 kb on + strand, within IAI47_02325at 479.775 kb on + strand, within IAI47_02325at 479.775 kb on + strand, within IAI47_02325at 479.775 kb on + strand, within IAI47_02325at 479.775 kb on + strand, within IAI47_02325at 479.776 kb on - strand, within IAI47_02325at 479.776 kb on - strand, within IAI47_02325at 479.776 kb on - strand, within IAI47_02325at 479.776 kb on - strand, within IAI47_02325at 479.776 kb on - strand, within IAI47_02325at 479.776 kb on - strand, within IAI47_02325at 479.776 kb on - strand, within IAI47_02325at 479.776 kb on - strand, within IAI47_02325at 479.808 kb on + strand, within IAI47_02325at 479.808 kb on + strand, within IAI47_02325at 479.809 kb on - strand, within IAI47_02325at 479.809 kb on - strand, within IAI47_02325at 479.809 kb on - strand, within IAI47_02325at 479.814 kb on + strand, within IAI47_02325at 479.814 kb on + strand, within IAI47_02325at 479.814 kb on + strand, within IAI47_02325at 479.815 kb on - strand, within IAI47_02325at 479.922 kb on + strand, within IAI47_02325at 479.923 kb on - strand, within IAI47_02325at 479.923 kb on - strand, within IAI47_02325at 479.923 kb on - strand, within IAI47_02325at 479.961 kb on + strand, within IAI47_02325at 479.961 kb on + strand, within IAI47_02325at 479.962 kb on - strand, within IAI47_02325at 479.962 kb on - strand, within IAI47_02325at 479.994 kb on + strandat 479.994 kb on + strandat 479.994 kb on + strandat 479.994 kb on + strandat 479.994 kb on + strandat 479.995 kb on - strandat 479.995 kb on - strandat 479.996 kb on + strandat 479.996 kb on + strandat 479.997 kb on - strandat 480.004 kb on + strandat 480.004 kb on + strandat 480.064 kb on - strandat 480.064 kb on - strandat 480.124 kb on + strandat 480.124 kb on + strandat 480.124 kb on + strandat 480.124 kb on + strandat 480.125 kb on - strandat 480.125 kb on - strandat 480.125 kb on - strandat 480.125 kb on - strandat 480.126 kb on + strandat 480.127 kb on - strandat 480.138 kb on + strandat 480.138 kb on + strandat 480.181 kb on - strandat 480.181 kb on - strandat 480.181 kb on - strandat 480.181 kb on - strandat 480.183 kb on - strandat 480.183 kb on - strandat 480.183 kb on - strandat 480.183 kb on - strandat 480.183 kb on - strandat 480.394 kb on + strandat 480.394 kb on + strandat 480.394 kb on + strandat 480.394 kb on + strandat 480.394 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1
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479,516 + -0.9
479,516 + -0.8
479,516 + -1.2
479,516 + -1.6
479,516 + -0.5
479,516 + -0.0
479,516 + +0.8
479,516 + +0.5
479,516 + +0.6
479,516 + +1.3
479,516 + +0.1
479,516 + -1.5
479,516 + -0.3
479,517 - +1.1
479,517 - +1.8
479,517 - +0.6
479,517 - -3.0
479,517 - -0.8
479,517 - +0.0
479,517 - +1.6
479,517 - -0.5
479,517 - +0.8
479,517 - +0.6
479,517 - -0.6
479,517 - -0.0
479,517 - +1.4
479,517 - +0.4
479,517 - -1.0
479,517 - -0.4
479,532 - IAI47_02325 0.12 +0.4
479,532 - IAI47_02325 0.12 -0.3
479,536 + IAI47_02325 0.13 +1.6
479,537 - IAI47_02325 0.13 -0.9
479,537 - IAI47_02325 0.13 -0.4
479,559 + IAI47_02325 0.17 -0.1
479,560 - IAI47_02325 0.17 -0.5
479,594 + IAI47_02325 0.23 +0.4
479,594 + IAI47_02325 0.23 +2.8
479,594 + IAI47_02325 0.23 +4.0
479,595 - IAI47_02325 0.24 +0.8
479,595 - IAI47_02325 0.24 +0.1
479,595 - IAI47_02325 0.24 +0.8
479,595 - IAI47_02325 0.24 -1.1
479,595 - IAI47_02325 0.24 -0.7
479,595 - IAI47_02325 0.24 +0.8
479,600 + IAI47_02325 0.25 +0.8
479,600 + IAI47_02325 0.25 -0.2
479,601 - IAI47_02325 0.25 +0.8
479,601 - IAI47_02325 0.25 +0.8
479,619 + IAI47_02325 0.28 -0.6
479,665 + IAI47_02325 0.36 +0.3
479,665 + IAI47_02325 0.36 -1.2
479,666 - IAI47_02325 0.36 -0.6
479,666 - IAI47_02325 0.36 +0.6
479,668 + IAI47_02325 0.37 +0.4
479,668 + IAI47_02325 0.37 -1.9
479,668 + IAI47_02325 0.37 -0.2
479,668 + IAI47_02325 0.37 -1.2
479,669 - IAI47_02325 0.37 +0.8
479,669 - IAI47_02325 0.37 +2.1
479,669 - IAI47_02325 0.37 -1.2
479,669 - IAI47_02325 0.37 -0.7
479,669 - IAI47_02325 0.37 +0.8
479,669 - IAI47_02325 0.37 +0.3
479,671 + IAI47_02325 0.37 -0.2
479,671 + IAI47_02325 0.37 +0.5
479,671 + IAI47_02325 0.37 +2.8
479,671 + IAI47_02325 0.37 -0.3
479,672 - IAI47_02325 0.37 +0.8
479,672 - IAI47_02325 0.37 +0.3
479,672 - IAI47_02325 0.37 -0.6
479,724 + IAI47_02325 0.47 -2.0
479,724 + IAI47_02325 0.47 +0.4
479,724 + IAI47_02325 0.47 +0.2
479,724 + IAI47_02325 0.47 +1.2
479,724 + IAI47_02325 0.47 +0.5
479,725 - IAI47_02325 0.47 -1.9
479,725 - IAI47_02325 0.47 +0.5
479,725 - IAI47_02325 0.47 -2.6
479,772 + IAI47_02325 0.55 -2.0
479,772 + IAI47_02325 0.55 -1.5
479,772 + IAI47_02325 0.55 -0.2
479,773 - IAI47_02325 0.56 +1.8
479,775 + IAI47_02325 0.56 +2.2
479,775 + IAI47_02325 0.56 +0.2
479,775 + IAI47_02325 0.56 -0.7
479,775 + IAI47_02325 0.56 +0.4
479,775 + IAI47_02325 0.56 -0.5
479,775 + IAI47_02325 0.56 +0.4
479,775 + IAI47_02325 0.56 +2.0
479,776 - IAI47_02325 0.56 -0.8
479,776 - IAI47_02325 0.56 +0.8
479,776 - IAI47_02325 0.56 +0.6
479,776 - IAI47_02325 0.56 -0.7
479,776 - IAI47_02325 0.56 +0.3
479,776 - IAI47_02325 0.56 +0.8
479,776 - IAI47_02325 0.56 -1.8
479,776 - IAI47_02325 0.56 -1.3
479,808 + IAI47_02325 0.62 -0.3
479,808 + IAI47_02325 0.62 -0.8
479,809 - IAI47_02325 0.62 -0.0
479,809 - IAI47_02325 0.62 +0.2
479,809 - IAI47_02325 0.62 +0.5
479,814 + IAI47_02325 0.63 +0.8
479,814 + IAI47_02325 0.63 +1.2
479,814 + IAI47_02325 0.63 -2.3
479,815 - IAI47_02325 0.63 -0.3
479,922 + IAI47_02325 0.83 -2.6
479,923 - IAI47_02325 0.83 +0.8
479,923 - IAI47_02325 0.83 +0.8
479,923 - IAI47_02325 0.83 -0.8
479,961 + IAI47_02325 0.90 -1.0
479,961 + IAI47_02325 0.90 +2.4
479,962 - IAI47_02325 0.90 -0.4
479,962 - IAI47_02325 0.90 -1.8
479,994 + +0.5
479,994 + +0.7
479,994 + -0.2
479,994 + +0.5
479,994 + -2.2
479,995 - +0.5
479,995 - -0.8
479,996 + +0.7
479,996 + -0.6
479,997 - -0.8
480,004 + -0.9
480,004 + +0.8
480,064 - +1.2
480,064 - +0.3
480,124 + +1.8
480,124 + -1.4
480,124 + -0.8
480,124 + -0.5
480,125 - -2.2
480,125 - -1.8
480,125 - -0.5
480,125 - -0.6
480,126 + +1.4
480,127 - +0.4
480,138 + -2.4
480,138 + +0.4
480,181 - +1.0
480,181 - +0.1
480,181 - -1.2
480,181 - -0.3
480,183 - -2.5
480,183 - -0.8
480,183 - -0.0
480,183 - +1.8
480,183 - +0.0
480,394 + +0.8
480,394 + -1.0
480,394 + +0.5
480,394 + +0.4
480,394 + +0.2

Or see this region's nucleotide sequence