Experiment: Ying_Others16 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01660 and IAI47_01665 are separated by 24 nucleotides IAI47_01665 and IAI47_01670 are separated by 333 nucleotides IAI47_01670 and IAI47_01675 are separated by 217 nucleotides
IAI47_01660: IAI47_01660 - gluconate transporter, at 360,054 to 361,394
_01660
IAI47_01665: IAI47_01665 - DUF805 domain-containing protein, at 361,419 to 361,742
_01665
IAI47_01670: IAI47_01670 - YhgN family NAAT transporter, at 362,076 to 362,669
_01670
IAI47_01675: IAI47_01675 - aspartate-semialdehyde dehydrogenase, at 362,887 to 363,996
_01675
Position (kb) 362
363 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 361.088 kb on + strand, within IAI47_01660 at 361.088 kb on + strand, within IAI47_01660 at 361.088 kb on + strand, within IAI47_01660 at 361.088 kb on + strand, within IAI47_01660 at 361.156 kb on + strand, within IAI47_01660 at 361.157 kb on - strand, within IAI47_01660 at 361.157 kb on - strand, within IAI47_01660 at 361.185 kb on + strand, within IAI47_01660 at 361.185 kb on + strand, within IAI47_01660 at 361.185 kb on + strand, within IAI47_01660 at 361.185 kb on + strand, within IAI47_01660 at 361.186 kb on - strand, within IAI47_01660 at 361.241 kb on + strand, within IAI47_01660 at 361.241 kb on + strand, within IAI47_01660 at 361.242 kb on - strand, within IAI47_01660 at 361.410 kb on - strand at 361.468 kb on + strand, within IAI47_01665 at 361.468 kb on + strand, within IAI47_01665 at 361.469 kb on - strand, within IAI47_01665 at 361.521 kb on + strand, within IAI47_01665 at 361.522 kb on - strand, within IAI47_01665 at 361.522 kb on - strand, within IAI47_01665 at 361.522 kb on - strand, within IAI47_01665 at 361.557 kb on - strand, within IAI47_01665 at 361.557 kb on - strand, within IAI47_01665 at 361.615 kb on + strand, within IAI47_01665 at 361.615 kb on + strand, within IAI47_01665 at 361.616 kb on - strand, within IAI47_01665 at 361.616 kb on - strand, within IAI47_01665 at 361.652 kb on + strand, within IAI47_01665 at 361.652 kb on + strand, within IAI47_01665 at 361.658 kb on - strand, within IAI47_01665 at 361.658 kb on - strand, within IAI47_01665 at 361.658 kb on - strand, within IAI47_01665 at 361.684 kb on + strand, within IAI47_01665 at 361.685 kb on - strand, within IAI47_01665 at 361.688 kb on + strand, within IAI47_01665 at 361.688 kb on + strand, within IAI47_01665 at 361.688 kb on + strand, within IAI47_01665 at 361.688 kb on + strand, within IAI47_01665 at 361.688 kb on + strand, within IAI47_01665 at 361.688 kb on + strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.689 kb on - strand, within IAI47_01665 at 361.751 kb on + strand at 361.752 kb on - strand at 361.791 kb on + strand at 361.791 kb on + strand at 361.791 kb on + strand at 361.792 kb on - strand at 361.792 kb on - strand at 361.792 kb on - strand at 361.795 kb on + strand at 361.795 kb on + strand at 361.795 kb on + strand at 361.795 kb on + strand at 361.796 kb on - strand at 361.796 kb on - strand at 361.796 kb on - strand at 361.796 kb on - strand at 361.796 kb on - strand at 361.814 kb on + strand at 361.872 kb on + strand at 361.872 kb on + strand at 361.873 kb on - strand at 361.873 kb on - strand at 361.873 kb on - strand at 361.875 kb on + strand at 361.875 kb on + strand at 361.875 kb on + strand at 361.875 kb on + strand at 361.876 kb on - strand at 361.876 kb on - strand at 361.876 kb on - strand at 361.876 kb on - strand at 361.876 kb on - strand at 361.876 kb on - strand at 361.876 kb on - strand at 361.876 kb on - strand at 361.877 kb on - strand at 361.928 kb on + strand at 361.938 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.954 kb on + strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.955 kb on - strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.972 kb on + strand at 361.973 kb on - strand at 361.973 kb on - strand at 361.973 kb on - strand at 361.974 kb on + strand at 361.974 kb on + strand at 361.974 kb on + strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.975 kb on - strand at 361.976 kb on + strand at 361.976 kb on + strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.977 kb on - strand at 361.980 kb on + strand at 361.980 kb on + strand at 361.980 kb on + strand at 361.981 kb on - strand at 361.983 kb on + strand at 361.984 kb on - strand at 361.987 kb on - strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.014 kb on + strand at 362.058 kb on - strand at 362.058 kb on - strand at 362.058 kb on - strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.077 kb on + strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.078 kb on - strand at 362.089 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.129 kb on + strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.130 kb on - strand at 362.136 kb on + strand, within IAI47_01670 at 362.136 kb on + strand, within IAI47_01670 at 362.137 kb on - strand, within IAI47_01670 at 362.137 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.175 kb on - strand, within IAI47_01670 at 362.278 kb on + strand, within IAI47_01670 at 362.279 kb on - strand, within IAI47_01670 at 362.279 kb on - strand, within IAI47_01670 at 362.374 kb on - strand, within IAI47_01670 at 362.417 kb on + strand, within IAI47_01670 at 362.417 kb on + strand, within IAI47_01670 at 362.551 kb on - strand, within IAI47_01670 at 362.551 kb on - strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.586 kb on + strand, within IAI47_01670 at 362.597 kb on + strand, within IAI47_01670 at 362.597 kb on + strand, within IAI47_01670 at 362.598 kb on - strand, within IAI47_01670 at 362.628 kb on - strand at 362.628 kb on - strand at 362.628 kb on - strand at 362.631 kb on + strand at 362.631 kb on + strand at 362.631 kb on + strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.632 kb on - strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.640 kb on + strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.641 kb on - strand at 362.643 kb on + strand at 362.643 kb on + strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.644 kb on - strand at 362.676 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.706 kb on + strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.707 kb on - strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.709 kb on + strand at 362.710 kb on - strand at 362.713 kb on + strand at 362.714 kb on - strand at 362.745 kb on - strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.793 kb on + strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.794 kb on - strand at 362.800 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.803 kb on + strand at 362.826 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand at 362.864 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep C; time point 1 remove 361,088 + IAI47_01660 0.77 +0.1 361,088 + IAI47_01660 0.77 +0.1 361,088 + IAI47_01660 0.77 +0.0 361,088 + IAI47_01660 0.77 -0.8 361,156 + IAI47_01660 0.82 -1.3 361,157 - IAI47_01660 0.82 +0.9 361,157 - IAI47_01660 0.82 -0.6 361,185 + IAI47_01660 0.84 -0.4 361,185 + IAI47_01660 0.84 +1.4 361,185 + IAI47_01660 0.84 -0.4 361,185 + IAI47_01660 0.84 -0.3 361,186 - IAI47_01660 0.84 +1.1 361,241 + IAI47_01660 0.89 +0.4 361,241 + IAI47_01660 0.89 +1.0 361,242 - IAI47_01660 0.89 -0.2 361,410 - +0.9 361,468 + IAI47_01665 0.15 -0.5 361,468 + IAI47_01665 0.15 -0.1 361,469 - IAI47_01665 0.15 +0.0 361,521 + IAI47_01665 0.31 +0.4 361,522 - IAI47_01665 0.32 +0.7 361,522 - IAI47_01665 0.32 +1.5 361,522 - IAI47_01665 0.32 -1.4 361,557 - IAI47_01665 0.43 +1.4 361,557 - IAI47_01665 0.43 +1.3 361,615 + IAI47_01665 0.60 +0.6 361,615 + IAI47_01665 0.60 -1.6 361,616 - IAI47_01665 0.61 -0.8 361,616 - IAI47_01665 0.61 +0.6 361,652 + IAI47_01665 0.72 +0.0 361,652 + IAI47_01665 0.72 -1.5 361,658 - IAI47_01665 0.74 +0.9 361,658 - IAI47_01665 0.74 -0.1 361,658 - IAI47_01665 0.74 +1.2 361,684 + IAI47_01665 0.82 -1.5 361,685 - IAI47_01665 0.82 +0.1 361,688 + IAI47_01665 0.83 -0.0 361,688 + IAI47_01665 0.83 -0.7 361,688 + IAI47_01665 0.83 +0.1 361,688 + IAI47_01665 0.83 +0.4 361,688 + IAI47_01665 0.83 +0.9 361,688 + IAI47_01665 0.83 +0.0 361,689 - IAI47_01665 0.83 +0.5 361,689 - IAI47_01665 0.83 -0.7 361,689 - IAI47_01665 0.83 +1.9 361,689 - IAI47_01665 0.83 +2.2 361,689 - IAI47_01665 0.83 -0.7 361,689 - IAI47_01665 0.83 +0.1 361,689 - IAI47_01665 0.83 +0.9 361,689 - IAI47_01665 0.83 -0.6 361,689 - IAI47_01665 0.83 +0.6 361,751 + +0.9 361,752 - -1.1 361,791 + -2.6 361,791 + -0.6 361,791 + -1.0 361,792 - +0.4 361,792 - +1.7 361,792 - +0.4 361,795 + -0.1 361,795 + -1.3 361,795 + +1.0 361,795 + +1.6 361,796 - +1.3 361,796 - -0.5 361,796 - -0.1 361,796 - -0.1 361,796 - +0.1 361,814 + +0.3 361,872 + +0.9 361,872 + +0.0 361,873 - +0.4 361,873 - -0.2 361,873 - +1.1 361,875 + +0.2 361,875 + -0.7 361,875 + +2.2 361,875 + -0.4 361,876 - +0.9 361,876 - -0.2 361,876 - +0.9 361,876 - +1.3 361,876 - +1.7 361,876 - +0.8 361,876 - +0.3 361,876 - -0.7 361,877 - +0.5 361,928 + -2.0 361,938 + +0.2 361,954 + +1.0 361,954 + +0.5 361,954 + -0.6 361,954 + +0.6 361,955 - +0.7 361,955 - -2.2 361,955 - +0.5 361,955 - +0.2 361,972 + -0.7 361,972 + -1.7 361,972 + -0.2 361,972 + -0.1 361,972 + -1.1 361,972 + +0.1 361,972 + +0.9 361,972 + -0.5 361,973 - +0.3 361,973 - -1.1 361,973 - +0.7 361,974 + +0.3 361,974 + +0.1 361,974 + +0.9 361,975 - +0.4 361,975 - +0.7 361,975 - -0.1 361,975 - +1.3 361,975 - -0.1 361,975 - -0.7 361,976 + +0.1 361,976 + +1.0 361,977 - +1.4 361,977 - -0.5 361,977 - -2.8 361,977 - -0.0 361,977 - -1.7 361,980 + +0.5 361,980 + -0.3 361,980 + +1.3 361,981 - +0.9 361,983 + +2.7 361,984 - -0.6 361,987 - -2.0 362,014 + -0.7 362,014 + +0.1 362,014 + -0.1 362,014 + -1.0 362,058 - +0.9 362,058 - +0.9 362,058 - -0.6 362,077 + -1.1 362,077 + +2.3 362,077 + -0.7 362,077 + +1.9 362,077 + -0.0 362,078 - +1.0 362,078 - +0.3 362,078 - +0.2 362,078 - +0.4 362,089 + +0.2 362,129 + -0.7 362,129 + +0.4 362,129 + +0.2 362,129 + +0.1 362,130 - -1.1 362,130 - -0.7 362,130 - -1.5 362,130 - +1.2 362,130 - +0.7 362,136 + IAI47_01670 0.10 -0.7 362,136 + IAI47_01670 0.10 +0.0 362,137 - IAI47_01670 0.10 +0.1 362,137 - IAI47_01670 0.10 -1.1 362,175 - IAI47_01670 0.17 +0.4 362,175 - IAI47_01670 0.17 +1.3 362,175 - IAI47_01670 0.17 +0.6 362,175 - IAI47_01670 0.17 -0.1 362,175 - IAI47_01670 0.17 -0.1 362,278 + IAI47_01670 0.34 -0.7 362,279 - IAI47_01670 0.34 -1.6 362,279 - IAI47_01670 0.34 -1.3 362,374 - IAI47_01670 0.50 -0.7 362,417 + IAI47_01670 0.57 -2.4 362,417 + IAI47_01670 0.57 +0.6 362,551 - IAI47_01670 0.80 +0.9 362,551 - IAI47_01670 0.80 -1.2 362,586 + IAI47_01670 0.86 -1.7 362,586 + IAI47_01670 0.86 -0.5 362,586 + IAI47_01670 0.86 -0.9 362,597 + IAI47_01670 0.88 -1.3 362,597 + IAI47_01670 0.88 -0.3 362,598 - IAI47_01670 0.88 +1.4 362,628 - -1.0 362,628 - +0.5 362,628 - -0.7 362,631 + +0.1 362,631 + +0.2 362,631 + -0.1 362,632 - -0.8 362,632 - -0.5 362,632 - +0.7 362,632 - -0.5 362,632 - -0.4 362,640 + +0.9 362,640 + -3.4 362,640 + +1.2 362,640 + -0.1 362,640 + -0.5 362,641 - +0.3 362,641 - -0.6 362,641 - +0.2 362,641 - -2.1 362,641 - -0.1 362,641 - +2.7 362,643 + -1.1 362,643 + -1.4 362,644 - +1.1 362,644 - +0.6 362,644 - +0.9 362,644 - -1.4 362,676 + -0.1 362,706 + -0.6 362,706 + +1.2 362,706 + +1.1 362,706 + +0.4 362,706 + -0.8 362,706 + +0.4 362,707 - +0.8 362,707 - +0.9 362,707 - -1.1 362,707 - -0.6 362,707 - -1.5 362,709 + +0.0 362,709 + -1.1 362,709 + -2.6 362,709 + +0.5 362,709 + -1.3 362,710 - -1.6 362,713 + -0.7 362,714 - +0.9 362,745 - +0.1 362,793 + +0.6 362,793 + +0.1 362,793 + -3.1 362,793 + +0.1 362,794 - -1.1 362,794 - -1.1 362,794 - -0.1 362,794 - -0.5 362,794 - -1.1 362,794 - +0.3 362,800 + +0.3 362,803 + +0.7 362,803 + +2.0 362,803 + +0.2 362,803 + -0.4 362,803 + +0.9 362,803 + -1.0 362,826 + +1.2 362,864 + -1.1 362,864 + -0.9 362,864 + -0.7 362,864 + -0.7 362,864 + +0.3 362,864 + +1.2
Or see this region's nucleotide sequence