Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_21725 and IAI47_21730 are separated by 59 nucleotides IAI47_21730 and IAI47_21735 are separated by 83 nucleotides IAI47_21735 and IAI47_21740 are separated by 104 nucleotides IAI47_21740 and IAI47_21745 are separated by 14 nucleotides
IAI47_21725: IAI47_21725 - efflux RND transporter permease subunit, at 86,946 to 89,990
_21725
IAI47_21730: IAI47_21730 - hypothetical protein, at 90,050 to 90,295
_21730
IAI47_21735: IAI47_21735 - LysR family transcriptional regulator, at 90,379 to 91,272
_21735
IAI47_21740: IAI47_21740 - acetolactate decarboxylase, at 91,377 to 92,159
_21740
IAI47_21745: IAI47_21745 - acetolactate synthase AlsS, at 92,174 to 93,853
_21745
Position (kb) 90
91
92 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 89.468 kb on + strand, within IAI47_21725 at 89.468 kb on + strand, within IAI47_21725 at 89.468 kb on + strand, within IAI47_21725 at 89.468 kb on + strand, within IAI47_21725 at 89.469 kb on - strand, within IAI47_21725 at 89.469 kb on - strand, within IAI47_21725 at 89.469 kb on - strand, within IAI47_21725 at 89.469 kb on - strand, within IAI47_21725 at 89.638 kb on + strand, within IAI47_21725 at 89.639 kb on - strand, within IAI47_21725 at 89.639 kb on - strand, within IAI47_21725 at 89.639 kb on - strand, within IAI47_21725 at 89.660 kb on + strand, within IAI47_21725 at 89.693 kb on + strand at 89.694 kb on - strand at 89.732 kb on + strand at 89.732 kb on + strand at 89.732 kb on + strand at 89.732 kb on + strand at 89.733 kb on - strand at 89.733 kb on - strand at 89.750 kb on + strand at 89.786 kb on + strand at 89.861 kb on + strand at 89.862 kb on - strand at 89.862 kb on - strand at 89.904 kb on - strand at 89.925 kb on - strand at 89.939 kb on + strand at 89.939 kb on + strand at 89.939 kb on + strand at 89.939 kb on + strand at 89.939 kb on + strand at 89.939 kb on + strand at 89.939 kb on + strand at 89.940 kb on - strand at 89.940 kb on - strand at 89.940 kb on - strand at 89.940 kb on - strand at 89.940 kb on - strand at 89.940 kb on - strand at 89.944 kb on + strand at 89.960 kb on - strand at 89.988 kb on + strand at 89.989 kb on - strand at 90.108 kb on + strand, within IAI47_21730 at 90.108 kb on + strand, within IAI47_21730 at 90.108 kb on + strand, within IAI47_21730 at 90.108 kb on + strand, within IAI47_21730 at 90.109 kb on - strand, within IAI47_21730 at 90.109 kb on - strand, within IAI47_21730 at 90.153 kb on + strand, within IAI47_21730 at 90.154 kb on - strand, within IAI47_21730 at 90.154 kb on - strand, within IAI47_21730 at 90.154 kb on - strand, within IAI47_21730 at 90.159 kb on + strand, within IAI47_21730 at 90.159 kb on + strand, within IAI47_21730 at 90.159 kb on + strand, within IAI47_21730 at 90.159 kb on + strand, within IAI47_21730 at 90.159 kb on + strand, within IAI47_21730 at 90.160 kb on - strand, within IAI47_21730 at 90.160 kb on - strand, within IAI47_21730 at 90.160 kb on - strand, within IAI47_21730 at 90.171 kb on + strand, within IAI47_21730 at 90.172 kb on - strand, within IAI47_21730 at 90.278 kb on + strand at 90.278 kb on + strand at 90.278 kb on + strand at 90.279 kb on - strand at 90.279 kb on - strand at 90.285 kb on + strand at 90.285 kb on + strand at 90.286 kb on - strand at 90.286 kb on - strand at 90.286 kb on - strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.287 kb on + strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.288 kb on - strand at 90.289 kb on + strand at 90.289 kb on + strand at 90.289 kb on + strand at 90.289 kb on + strand at 90.289 kb on + strand at 90.289 kb on + strand at 90.289 kb on + strand at 90.289 kb on + strand at 90.289 kb on + strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.290 kb on - strand at 90.305 kb on - strand at 90.337 kb on + strand at 90.338 kb on - strand at 90.350 kb on - strand at 90.350 kb on - strand at 90.354 kb on + strand at 90.354 kb on + strand at 90.354 kb on + strand at 90.354 kb on + strand at 90.354 kb on + strand at 90.354 kb on + strand at 90.354 kb on + strand at 90.354 kb on + strand at 90.355 kb on - strand at 90.355 kb on - strand at 90.355 kb on - strand at 90.380 kb on + strand at 90.380 kb on + strand at 90.380 kb on + strand at 90.381 kb on - strand at 90.381 kb on - strand at 90.574 kb on - strand, within IAI47_21735 at 90.659 kb on + strand, within IAI47_21735 at 90.659 kb on + strand, within IAI47_21735 at 90.660 kb on - strand, within IAI47_21735 at 90.660 kb on - strand, within IAI47_21735 at 90.660 kb on - strand, within IAI47_21735 at 90.660 kb on - strand, within IAI47_21735 at 90.660 kb on - strand, within IAI47_21735 at 90.735 kb on + strand, within IAI47_21735 at 90.736 kb on - strand, within IAI47_21735 at 90.742 kb on + strand, within IAI47_21735 at 90.743 kb on - strand, within IAI47_21735 at 90.851 kb on - strand, within IAI47_21735 at 90.862 kb on + strand, within IAI47_21735 at 90.862 kb on + strand, within IAI47_21735 at 90.862 kb on + strand, within IAI47_21735 at 90.862 kb on + strand, within IAI47_21735 at 90.885 kb on + strand, within IAI47_21735 at 90.885 kb on + strand, within IAI47_21735 at 90.885 kb on + strand, within IAI47_21735 at 90.885 kb on + strand, within IAI47_21735 at 90.885 kb on + strand, within IAI47_21735 at 90.885 kb on + strand, within IAI47_21735 at 90.885 kb on + strand, within IAI47_21735 at 90.886 kb on - strand, within IAI47_21735 at 90.920 kb on + strand, within IAI47_21735 at 90.931 kb on - strand, within IAI47_21735 at 90.936 kb on + strand, within IAI47_21735 at 90.937 kb on - strand, within IAI47_21735 at 90.937 kb on - strand, within IAI47_21735 at 90.937 kb on - strand, within IAI47_21735 at 90.937 kb on - strand, within IAI47_21735 at 90.963 kb on + strand, within IAI47_21735 at 90.963 kb on + strand, within IAI47_21735 at 90.964 kb on - strand, within IAI47_21735 at 91.165 kb on + strand, within IAI47_21735 at 91.165 kb on + strand, within IAI47_21735 at 91.165 kb on + strand, within IAI47_21735 at 91.166 kb on - strand, within IAI47_21735 at 91.193 kb on - strand at 91.251 kb on - strand at 91.272 kb on + strand at 91.272 kb on + strand at 91.273 kb on - strand at 91.273 kb on - strand at 91.293 kb on - strand at 91.305 kb on + strand at 91.359 kb on + strand at 91.418 kb on - strand at 91.418 kb on - strand at 91.418 kb on - strand at 91.424 kb on + strand at 91.424 kb on + strand at 91.425 kb on - strand at 91.425 kb on - strand at 91.425 kb on - strand at 91.425 kb on - strand at 91.432 kb on + strand at 91.432 kb on + strand at 91.433 kb on - strand at 91.463 kb on + strand, within IAI47_21740 at 91.463 kb on + strand, within IAI47_21740 at 91.464 kb on - strand, within IAI47_21740 at 91.464 kb on - strand, within IAI47_21740 at 91.467 kb on + strand, within IAI47_21740 at 91.468 kb on - strand, within IAI47_21740 at 91.468 kb on - strand, within IAI47_21740 at 91.468 kb on - strand, within IAI47_21740 at 91.506 kb on + strand, within IAI47_21740 at 91.507 kb on - strand, within IAI47_21740 at 91.507 kb on - strand, within IAI47_21740 at 91.514 kb on + strand, within IAI47_21740 at 91.515 kb on - strand, within IAI47_21740 at 91.611 kb on + strand, within IAI47_21740 at 91.611 kb on + strand, within IAI47_21740 at 91.611 kb on + strand, within IAI47_21740 at 91.612 kb on - strand, within IAI47_21740 at 91.790 kb on - strand, within IAI47_21740 at 91.790 kb on - strand, within IAI47_21740 at 91.886 kb on + strand, within IAI47_21740 at 91.886 kb on + strand, within IAI47_21740 at 91.886 kb on + strand, within IAI47_21740 at 91.887 kb on - strand, within IAI47_21740 at 91.887 kb on - strand, within IAI47_21740 at 91.941 kb on + strand, within IAI47_21740 at 91.941 kb on + strand, within IAI47_21740 at 91.941 kb on + strand, within IAI47_21740 at 91.941 kb on + strand, within IAI47_21740 at 91.941 kb on + strand, within IAI47_21740 at 91.941 kb on + strand, within IAI47_21740 at 91.941 kb on + strand, within IAI47_21740 at 91.941 kb on + strand, within IAI47_21740 at 91.942 kb on - strand, within IAI47_21740 at 91.942 kb on - strand, within IAI47_21740 at 91.942 kb on - strand, within IAI47_21740 at 91.942 kb on - strand, within IAI47_21740 at 91.942 kb on - strand, within IAI47_21740 at 91.942 kb on - strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.943 kb on + strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.944 kb on - strand, within IAI47_21740 at 91.955 kb on + strand, within IAI47_21740 at 91.956 kb on - strand, within IAI47_21740 at 91.982 kb on + strand, within IAI47_21740 at 91.983 kb on - strand, within IAI47_21740 at 91.983 kb on - strand, within IAI47_21740 at 91.986 kb on - strand, within IAI47_21740 at 92.150 kb on - strand at 92.157 kb on + strand at 92.157 kb on + strand at 92.157 kb on + strand at 92.157 kb on + strand at 92.157 kb on + strand at 92.157 kb on + strand at 92.158 kb on - strand at 92.191 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 89,468 + IAI47_21725 0.83 -0.7 89,468 + IAI47_21725 0.83 -0.3 89,468 + IAI47_21725 0.83 -0.6 89,468 + IAI47_21725 0.83 +4.1 89,469 - IAI47_21725 0.83 -1.8 89,469 - IAI47_21725 0.83 -1.3 89,469 - IAI47_21725 0.83 +1.4 89,469 - IAI47_21725 0.83 -1.5 89,638 + IAI47_21725 0.88 +1.4 89,639 - IAI47_21725 0.88 +0.4 89,639 - IAI47_21725 0.88 +0.8 89,639 - IAI47_21725 0.88 +1.9 89,660 + IAI47_21725 0.89 -0.8 89,693 + -1.2 89,694 - -1.4 89,732 + -1.4 89,732 + -0.1 89,732 + +1.0 89,732 + -1.5 89,733 - -0.3 89,733 - +0.5 89,750 + +1.6 89,786 + -0.7 89,861 + -0.6 89,862 - +0.1 89,862 - -0.4 89,904 - -0.2 89,925 - -0.2 89,939 + +1.2 89,939 + +0.6 89,939 + +1.1 89,939 + -0.0 89,939 + +0.5 89,939 + -0.6 89,939 + +0.6 89,940 - -1.2 89,940 - -1.4 89,940 - +1.1 89,940 - -1.0 89,940 - +2.8 89,940 - +1.0 89,944 + -0.2 89,960 - -2.0 89,988 + -0.8 89,989 - -1.2 90,108 + IAI47_21730 0.24 -0.2 90,108 + IAI47_21730 0.24 -0.0 90,108 + IAI47_21730 0.24 -0.4 90,108 + IAI47_21730 0.24 -1.1 90,109 - IAI47_21730 0.24 -0.2 90,109 - IAI47_21730 0.24 +1.9 90,153 + IAI47_21730 0.42 +1.5 90,154 - IAI47_21730 0.42 -1.2 90,154 - IAI47_21730 0.42 +0.0 90,154 - IAI47_21730 0.42 -0.5 90,159 + IAI47_21730 0.44 -0.4 90,159 + IAI47_21730 0.44 +1.2 90,159 + IAI47_21730 0.44 +0.8 90,159 + IAI47_21730 0.44 -0.8 90,159 + IAI47_21730 0.44 +0.5 90,160 - IAI47_21730 0.45 +0.2 90,160 - IAI47_21730 0.45 -0.6 90,160 - IAI47_21730 0.45 +0.3 90,171 + IAI47_21730 0.49 +0.1 90,172 - IAI47_21730 0.50 +0.2 90,278 + +0.0 90,278 + +0.3 90,278 + -0.4 90,279 - -0.2 90,279 - +2.0 90,285 + -0.8 90,285 + -0.2 90,286 - +0.2 90,286 - -0.8 90,286 - +1.5 90,287 + +0.9 90,287 + -0.4 90,287 + +0.1 90,287 + -0.4 90,287 + -0.8 90,287 + -1.9 90,287 + -0.2 90,287 + +1.2 90,287 + -0.4 90,287 + -1.4 90,287 + -0.9 90,288 - +1.5 90,288 - -0.7 90,288 - -0.9 90,288 - +0.5 90,288 - +2.7 90,288 - -0.6 90,288 - +0.9 90,288 - -0.2 90,288 - -0.7 90,288 - -1.2 90,288 - -1.5 90,288 - +0.4 90,288 - -0.2 90,288 - +0.8 90,288 - -0.6 90,288 - -0.7 90,288 - -0.2 90,288 - -1.5 90,288 - -0.2 90,288 - -0.0 90,288 - -1.4 90,288 - -0.0 90,288 - -0.2 90,289 + +0.8 90,289 + -0.2 90,289 + +2.0 90,289 + -0.2 90,289 + -0.5 90,289 + +0.1 90,289 + +2.6 90,289 + -1.6 90,289 + -1.0 90,290 - -1.2 90,290 - +1.2 90,290 - +2.4 90,290 - +1.0 90,290 - -1.5 90,290 - +0.1 90,290 - -0.9 90,290 - +1.0 90,290 - +0.1 90,290 - +0.6 90,290 - -1.5 90,290 - +0.8 90,305 - -1.0 90,337 + -0.4 90,338 - -0.9 90,350 - -0.2 90,350 - +0.1 90,354 + -1.2 90,354 + -0.2 90,354 + +0.4 90,354 + +0.2 90,354 + +0.3 90,354 + +0.1 90,354 + -1.1 90,354 + -0.7 90,355 - +1.3 90,355 - +0.8 90,355 - -0.0 90,380 + -0.0 90,380 + -3.3 90,380 + -0.2 90,381 - +1.1 90,381 - -0.2 90,574 - IAI47_21735 0.22 -0.3 90,659 + IAI47_21735 0.31 -0.5 90,659 + IAI47_21735 0.31 +1.8 90,660 - IAI47_21735 0.31 +0.4 90,660 - IAI47_21735 0.31 -0.2 90,660 - IAI47_21735 0.31 -1.2 90,660 - IAI47_21735 0.31 -0.3 90,660 - IAI47_21735 0.31 +1.4 90,735 + IAI47_21735 0.40 +0.4 90,736 - IAI47_21735 0.40 -0.6 90,742 + IAI47_21735 0.41 -0.3 90,743 - IAI47_21735 0.41 -0.5 90,851 - IAI47_21735 0.53 -0.4 90,862 + IAI47_21735 0.54 +0.4 90,862 + IAI47_21735 0.54 -1.0 90,862 + IAI47_21735 0.54 -0.4 90,862 + IAI47_21735 0.54 +1.0 90,885 + IAI47_21735 0.57 -1.4 90,885 + IAI47_21735 0.57 -0.8 90,885 + IAI47_21735 0.57 +1.2 90,885 + IAI47_21735 0.57 -2.2 90,885 + IAI47_21735 0.57 -1.5 90,885 + IAI47_21735 0.57 -0.9 90,885 + IAI47_21735 0.57 +1.2 90,886 - IAI47_21735 0.57 +1.2 90,920 + IAI47_21735 0.61 -0.8 90,931 - IAI47_21735 0.62 -0.6 90,936 + IAI47_21735 0.62 -0.6 90,937 - IAI47_21735 0.62 -1.4 90,937 - IAI47_21735 0.62 -0.2 90,937 - IAI47_21735 0.62 -0.8 90,937 - IAI47_21735 0.62 -0.3 90,963 + IAI47_21735 0.65 -0.8 90,963 + IAI47_21735 0.65 -0.3 90,964 - IAI47_21735 0.65 -0.1 91,165 + IAI47_21735 0.88 +0.1 91,165 + IAI47_21735 0.88 +0.2 91,165 + IAI47_21735 0.88 +1.6 91,166 - IAI47_21735 0.88 -1.8 91,193 - +0.3 91,251 - +0.1 91,272 + -0.7 91,272 + -0.9 91,273 - +0.1 91,273 - -0.2 91,293 - -0.9 91,305 + -0.0 91,359 + -1.5 91,418 - -0.2 91,418 - -1.0 91,418 - +0.1 91,424 + -2.1 91,424 + +0.3 91,425 - +0.2 91,425 - -1.2 91,425 - -2.4 91,425 - +0.4 91,432 + -0.1 91,432 + +0.2 91,433 - -0.6 91,463 + IAI47_21740 0.11 +1.6 91,463 + IAI47_21740 0.11 -0.2 91,464 - IAI47_21740 0.11 +0.1 91,464 - IAI47_21740 0.11 -1.5 91,467 + IAI47_21740 0.11 -0.8 91,468 - IAI47_21740 0.12 +0.6 91,468 - IAI47_21740 0.12 -0.2 91,468 - IAI47_21740 0.12 -0.2 91,506 + IAI47_21740 0.16 +0.4 91,507 - IAI47_21740 0.17 -2.0 91,507 - IAI47_21740 0.17 +0.7 91,514 + IAI47_21740 0.17 +0.8 91,515 - IAI47_21740 0.18 +1.0 91,611 + IAI47_21740 0.30 -0.9 91,611 + IAI47_21740 0.30 +0.1 91,611 + IAI47_21740 0.30 +0.4 91,612 - IAI47_21740 0.30 +1.3 91,790 - IAI47_21740 0.53 -1.3 91,790 - IAI47_21740 0.53 -2.4 91,886 + IAI47_21740 0.65 -0.6 91,886 + IAI47_21740 0.65 -0.5 91,886 + IAI47_21740 0.65 +0.3 91,887 - IAI47_21740 0.65 +1.2 91,887 - IAI47_21740 0.65 -2.2 91,941 + IAI47_21740 0.72 +0.0 91,941 + IAI47_21740 0.72 +0.8 91,941 + IAI47_21740 0.72 +0.2 91,941 + IAI47_21740 0.72 -1.5 91,941 + IAI47_21740 0.72 +1.4 91,941 + IAI47_21740 0.72 +3.4 91,941 + IAI47_21740 0.72 -0.3 91,941 + IAI47_21740 0.72 -2.4 91,942 - IAI47_21740 0.72 -1.2 91,942 - IAI47_21740 0.72 +0.7 91,942 - IAI47_21740 0.72 +0.9 91,942 - IAI47_21740 0.72 -0.5 91,942 - IAI47_21740 0.72 +0.8 91,942 - IAI47_21740 0.72 +0.1 91,943 + IAI47_21740 0.72 -0.9 91,943 + IAI47_21740 0.72 -0.2 91,943 + IAI47_21740 0.72 +1.1 91,943 + IAI47_21740 0.72 -1.5 91,943 + IAI47_21740 0.72 +1.4 91,943 + IAI47_21740 0.72 -0.9 91,943 + IAI47_21740 0.72 -0.4 91,943 + IAI47_21740 0.72 +1.3 91,943 + IAI47_21740 0.72 +1.4 91,943 + IAI47_21740 0.72 +1.5 91,944 - IAI47_21740 0.72 -0.4 91,944 - IAI47_21740 0.72 -0.9 91,944 - IAI47_21740 0.72 -0.0 91,944 - IAI47_21740 0.72 +1.1 91,944 - IAI47_21740 0.72 -3.0 91,944 - IAI47_21740 0.72 -0.4 91,944 - IAI47_21740 0.72 -0.5 91,944 - IAI47_21740 0.72 +0.1 91,944 - IAI47_21740 0.72 -0.2 91,944 - IAI47_21740 0.72 -0.2 91,944 - IAI47_21740 0.72 +1.5 91,944 - IAI47_21740 0.72 +3.8 91,944 - IAI47_21740 0.72 -0.2 91,944 - IAI47_21740 0.72 -0.8 91,955 + IAI47_21740 0.74 +1.1 91,956 - IAI47_21740 0.74 -0.8 91,982 + IAI47_21740 0.77 -0.4 91,983 - IAI47_21740 0.77 +1.5 91,983 - IAI47_21740 0.77 -0.6 91,986 - IAI47_21740 0.78 +2.4 92,150 - -1.5 92,157 + +0.2 92,157 + +1.5 92,157 + -0.1 92,157 + +0.8 92,157 + +0.2 92,157 + +0.9 92,158 - -0.1 92,191 + -0.2
Or see this region's nucleotide sequence