Strain Fitness in Pantoea sp. MT58 around IAI47_17935

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
3,806,453	+				-1.6
3,806,453	+				-1.5
3,806,453	+				+0.1
3,806,454	-				+0.5
3,806,492	+				+1.4
3,806,492	+				+0.4
3,806,492	+				-0.5
3,806,492	+				+0.7
3,806,553	+				+1.7
3,806,553	+				-0.2
3,806,554	-				+0.5
3,806,554	-				+0.2
3,806,592	+				+0.2
3,806,639	+				+0.3
3,806,675	+		IAI47_17930	0.12	-0.0
3,806,675	+		IAI47_17930	0.12	-0.6
3,806,675	+		IAI47_17930	0.12	-0.4
3,806,675	+		IAI47_17930	0.12	-0.8
3,806,675	+		IAI47_17930	0.12	+0.2
3,806,675	+		IAI47_17930	0.12	-0.5
3,806,675	+		IAI47_17930	0.12	-1.4
3,806,675	+		IAI47_17930	0.12	-1.7
3,806,676	-		IAI47_17930	0.12	+1.2
3,806,676	-		IAI47_17930	0.12	-0.2
3,806,678	+		IAI47_17930	0.13	-1.5
3,806,679	-		IAI47_17930	0.13	+0.4
3,806,683	+		IAI47_17930	0.13	+2.4
3,806,684	-		IAI47_17930	0.13	-0.0
3,806,684	-		IAI47_17930	0.13	-0.0
3,806,721	-		IAI47_17930	0.18	+0.1
3,806,764	+		IAI47_17930	0.23	-0.6
3,806,764	+		IAI47_17930	0.23	-0.5
3,806,765	-		IAI47_17930	0.23	-0.4
3,806,765	-		IAI47_17930	0.23	-1.8
3,806,765	-		IAI47_17930	0.23	+0.6
3,806,852	+		IAI47_17930	0.34	+0.3
3,806,852	+		IAI47_17930	0.34	+0.3
3,806,852	+		IAI47_17930	0.34	-3.3
3,806,853	-		IAI47_17930	0.34	+0.3
3,806,873	+		IAI47_17930	0.37	+1.3
3,806,873	+		IAI47_17930	0.37	-0.5
3,806,873	+		IAI47_17930	0.37	+0.8
3,806,873	+		IAI47_17930	0.37	-0.3
3,806,873	+		IAI47_17930	0.37	-0.0
3,806,873	+		IAI47_17930	0.37	+2.0
3,806,874	-		IAI47_17930	0.37	-0.2
3,806,874	-		IAI47_17930	0.37	+1.4
3,806,874	-		IAI47_17930	0.37	+0.4
3,806,874	-		IAI47_17930	0.37	-1.8
3,806,874	-		IAI47_17930	0.37	-1.1
3,806,874	-		IAI47_17930	0.37	-0.2
3,806,951	+		IAI47_17930	0.46	+0.2
3,806,951	+		IAI47_17930	0.46	+0.7
3,806,952	-		IAI47_17930	0.46	+1.8
3,806,962	+		IAI47_17930	0.47	+1.0
3,806,962	+		IAI47_17930	0.47	+0.6
3,806,962	+		IAI47_17930	0.47	+0.3
3,806,962	+		IAI47_17930	0.47	-0.3
3,806,962	+		IAI47_17930	0.47	-0.9
3,806,962	+		IAI47_17930	0.47	+0.0
3,806,962	+		IAI47_17930	0.47	+0.8
3,806,963	-		IAI47_17930	0.48	+0.3
3,806,963	-		IAI47_17930	0.48	-0.2
3,806,963	-		IAI47_17930	0.48	+0.2
3,806,963	-		IAI47_17930	0.48	+0.6
3,806,963	-		IAI47_17930	0.48	+0.8
3,806,963	-		IAI47_17930	0.48	+0.8
3,806,963	-		IAI47_17930	0.48	+0.2
3,806,966	+		IAI47_17930	0.48	+0.5
3,806,966	+		IAI47_17930	0.48	-0.8
3,806,966	+		IAI47_17930	0.48	+0.7
3,806,966	+		IAI47_17930	0.48	-0.8
3,806,966	+		IAI47_17930	0.48	+0.3
3,806,967	-		IAI47_17930	0.48	-2.5
3,806,967	-		IAI47_17930	0.48	-0.5
3,806,967	-		IAI47_17930	0.48	+0.2
3,807,067	+		IAI47_17930	0.60	-1.1
3,807,067	+		IAI47_17930	0.60	-0.0
3,807,067	+		IAI47_17930	0.60	-0.8
3,807,067	+		IAI47_17930	0.60	+0.5
3,807,068	-		IAI47_17930	0.61	+1.2
3,807,068	-		IAI47_17930	0.61	-1.9
3,807,068	-		IAI47_17930	0.61	-1.2
3,807,068	-		IAI47_17930	0.61	+0.2
3,807,109	+		IAI47_17930	0.66	+0.8
3,807,161	+		IAI47_17930	0.72	-0.5
3,807,161	+		IAI47_17930	0.72	+0.8
3,807,162	-		IAI47_17930	0.72	-0.4
3,807,162	-		IAI47_17930	0.72	-0.8
3,807,519	+		IAI47_17935	0.16	-0.9
3,807,519	+		IAI47_17935	0.16	+0.5
3,807,520	-		IAI47_17935	0.16	+0.2
3,807,520	-		IAI47_17935	0.16	+0.8
3,807,520	-		IAI47_17935	0.16	-0.1
3,807,520	-		IAI47_17935	0.16	-0.2
3,807,520	-		IAI47_17935	0.16	-0.4
3,807,523	+		IAI47_17935	0.16	-1.2
3,807,523	+		IAI47_17935	0.16	+0.0
3,807,523	+		IAI47_17935	0.16	+0.8
3,807,523	+		IAI47_17935	0.16	-0.1
3,807,523	+		IAI47_17935	0.16	+0.3
3,807,523	+		IAI47_17935	0.16	+0.7
3,807,524	-		IAI47_17935	0.16	-0.2
3,807,524	-		IAI47_17935	0.16	-1.8
3,807,524	-		IAI47_17935	0.16	-0.6
3,807,524	-		IAI47_17935	0.16	+0.4
3,807,524	-		IAI47_17935	0.16	-0.9
3,807,524	-		IAI47_17935	0.16	-0.8
3,807,524	-		IAI47_17935	0.16	+0.4
3,807,524	-		IAI47_17935	0.16	+0.8
3,807,524	-		IAI47_17935	0.16	-0.1
3,807,524	-		IAI47_17935	0.16	+1.5
3,807,524	-		IAI47_17935	0.16	+0.8
3,807,524	-		IAI47_17935	0.16	-1.0
3,807,550	+		IAI47_17935	0.20	-1.8
3,807,550	+		IAI47_17935	0.20	+0.8
3,807,551	-		IAI47_17935	0.20	-0.1
3,807,551	-		IAI47_17935	0.20	+1.4
3,807,551	-		IAI47_17935	0.20	-1.5
3,807,551	-		IAI47_17935	0.20	-0.7
3,807,551	-		IAI47_17935	0.20	+0.4
3,807,579	+		IAI47_17935	0.23	-0.9
3,807,580	-		IAI47_17935	0.23	+0.3
3,807,580	-		IAI47_17935	0.23	+0.2
3,807,608	+		IAI47_17935	0.26	-1.1
3,807,608	+				+0.9
3,807,634	+		IAI47_17935	0.29	+1.6
3,807,675	+		IAI47_17935	0.34	+1.1
3,807,675	+		IAI47_17935	0.34	+0.8
3,807,676	-		IAI47_17935	0.34	-0.6
3,807,676	-		IAI47_17935	0.34	-1.2
3,807,676	-		IAI47_17935	0.34	-1.4
3,807,676	-		IAI47_17935	0.34	+2.4
3,807,685	-		IAI47_17935	0.35	-0.0
3,807,685	-		IAI47_17935	0.35	+1.5
3,807,685	-		IAI47_17935	0.35	+0.1
3,807,699	+		IAI47_17935	0.37	-0.7
3,807,699	+		IAI47_17935	0.37	-1.8
3,807,700	-		IAI47_17935	0.37	-0.9
3,807,700	-		IAI47_17935	0.37	+1.5
3,807,781	+		IAI47_17935	0.47	-0.4
3,807,781	+		IAI47_17935	0.47	-1.8
3,807,781	+		IAI47_17935	0.47	+0.0
3,807,781	+		IAI47_17935	0.47	-0.7
3,807,781	+		IAI47_17935	0.47	+0.0
3,807,781	+		IAI47_17935	0.47	+0.8
3,807,781	+		IAI47_17935	0.47	-1.0
3,807,781	+		IAI47_17935	0.47	+0.5
3,807,782	-		IAI47_17935	0.47	-0.3
3,807,782	-		IAI47_17935	0.47	+0.2
3,807,827	+		IAI47_17935	0.52	+1.8
3,807,827	+		IAI47_17935	0.52	-0.9
3,807,827	+		IAI47_17935	0.52	+0.8
3,807,828	-		IAI47_17935	0.52	-0.3
3,807,835	+		IAI47_17935	0.53	-0.4
3,807,835	+		IAI47_17935	0.53	+0.2
3,807,836	-		IAI47_17935	0.53	+0.1
3,807,875	-		IAI47_17935	0.58	+1.0
3,807,923	+		IAI47_17935	0.64	-0.9
3,807,923	+		IAI47_17935	0.64	-0.2
3,807,923	+		IAI47_17935	0.64	-2.7
3,807,947	-		IAI47_17935	0.66	+0.6
3,808,030	+		IAI47_17935	0.76	-0.2
3,808,030	+		IAI47_17935	0.76	+0.2
3,808,031	-		IAI47_17935	0.76	+0.6
3,808,042	+		IAI47_17935	0.78	+1.1
3,808,043	-		IAI47_17935	0.78	+1.2
3,808,043	-		IAI47_17935	0.78	+0.1
3,808,059	+		IAI47_17935	0.80	+0.6
3,808,107	+		IAI47_17935	0.85	-1.1
3,808,107	+		IAI47_17935	0.85	+0.1
3,808,108	-		IAI47_17935	0.85	+2.0
3,808,108	-		IAI47_17935	0.85	+0.5
3,808,158	+				+0.5
3,808,159	-				+0.8
3,808,159	-				-1.2
3,808,159	-				-2.4
3,808,159	-				+0.6
3,808,181	+				+0.8
3,808,182	-				-0.2
3,808,182	-				-1.9
3,808,189	+				+0.2
3,808,189	+				+0.0
3,808,189	+				-0.1
3,808,189	+				-0.3
3,808,189	+				+1.5
3,808,189	+				+0.1
3,808,190	-				+0.2
3,808,190	-				-1.4
3,808,190	-				-1.7
3,808,207	+				-1.8
3,808,207	+				+1.8
3,808,208	-				+0.3
3,808,208	-				-0.6
3,808,263	+				-1.6
3,808,263	+				+1.0
3,808,263	+				+0.6
3,808,264	-				-0.1
3,808,264	-				+0.3
3,808,264	-				-0.4
3,808,264	-				+1.0
3,808,264	-				+0.1
3,808,285	+				+2.9
3,808,293	-				-0.8
3,808,293	-				-0.2
3,808,329	+		IAI47_17940	0.11	+0.1
3,808,355	+		IAI47_17940	0.14	+0.1
3,808,355	+		IAI47_17940	0.14	-0.7
3,808,355	+		IAI47_17940	0.14	-0.0
3,808,355	+		IAI47_17940	0.14	-0.5
3,808,355	+		IAI47_17940	0.14	+1.6
3,808,356	-		IAI47_17940	0.15	-0.0
3,808,356	-		IAI47_17940	0.15	-0.6
3,808,374	+		IAI47_17940	0.17	-1.8
3,808,374	+		IAI47_17940	0.17	-1.5
3,808,512	+		IAI47_17940	0.34	+0.8
3,808,513	-		IAI47_17940	0.34	-1.1
3,808,534	+		IAI47_17940	0.37	+0.3
3,808,535	-		IAI47_17940	0.37	-0.4
3,808,595	-		IAI47_17940	0.45	+0.8
3,808,595	-		IAI47_17940	0.45	-1.4
3,808,595	-		IAI47_17940	0.45	-1.0
3,808,606	-		IAI47_17940	0.46	-0.8
3,808,659	+		IAI47_17940	0.53	-0.2
3,808,659	+		IAI47_17940	0.53	-0.8
3,808,660	-		IAI47_17940	0.53	-0.8
3,808,667	+		IAI47_17940	0.54	+0.4
3,808,682	+		IAI47_17940	0.56	-0.0
3,808,683	-		IAI47_17940	0.56	+0.1
3,808,683	-		IAI47_17940	0.56	-0.4
3,808,687	-		IAI47_17940	0.57	-0.4
3,808,687	-		IAI47_17940	0.57	-0.2
3,808,687	-		IAI47_17940	0.57	+1.6
3,808,706	+		IAI47_17940	0.59	-0.7
3,808,706	+		IAI47_17940	0.59	+0.5
3,808,706	+		IAI47_17940	0.59	+1.1
3,808,706	+		IAI47_17940	0.59	-0.1
3,808,707	-		IAI47_17940	0.59	-1.2
3,808,707	-		IAI47_17940	0.59	+0.8
3,808,707	-		IAI47_17940	0.59	-0.6
3,808,707	-		IAI47_17940	0.59	+0.9
3,808,707	-		IAI47_17940	0.59	+1.7
3,808,707	-		IAI47_17940	0.59	-0.6
3,808,707	-		IAI47_17940	0.59	+0.4
3,808,764	-		IAI47_17940	0.66	+0.3
3,808,764	-		IAI47_17940	0.66	-0.4
3,808,764	-		IAI47_17940	0.66	+0.5
3,808,825	+		IAI47_17940	0.74	+0.8
3,808,825	+		IAI47_17940	0.74	+0.7
3,808,825	+		IAI47_17940	0.74	+1.6
3,808,825	+		IAI47_17940	0.74	+0.4
3,808,826	-		IAI47_17940	0.74	+0.6
3,808,826	-		IAI47_17940	0.74	-2.9
3,808,890	+		IAI47_17940	0.82	-0.2
3,808,891	-		IAI47_17940	0.83	-0.6
3,808,908	+		IAI47_17940	0.85	-0.5
3,808,908	+		IAI47_17940	0.85	+1.8
3,808,909	-		IAI47_17940	0.85	+0.2
3,808,965	+				+0.8
3,809,029	+				+0.2
3,809,030	-				-0.0
3,809,030	-				-0.6
3,809,030	-				-1.2
3,809,036	+				-0.7
3,809,036	+				-1.3
3,809,036	+				-1.0
3,809,036	+				-1.7
3,809,036	+				+1.0
3,809,037	-				+0.8
3,809,037	-				+0.5
3,809,066	+				-0.3
3,809,067	-				-0.2
3,809,067	-				-1.0
3,809,067	-				+0.8
3,809,152	+		IAI47_17945	0.12	+0.3
3,809,152	+		IAI47_17945	0.12	-0.5
3,809,152	+		IAI47_17945	0.12	-1.5
3,809,153	-		IAI47_17945	0.12	+0.8
3,809,153	-		IAI47_17945	0.12	+0.6
3,809,153	-		IAI47_17945	0.12	-1.2
3,809,185	-		IAI47_17945	0.16	-0.2
3,809,227	+		IAI47_17945	0.20	-0.7
3,809,227	+		IAI47_17945	0.20	+1.0
3,809,228	-		IAI47_17945	0.20	+0.5
3,809,228	-		IAI47_17945	0.20	+1.2
3,809,228	-		IAI47_17945	0.20	-0.9
3,809,228	-		IAI47_17945	0.20	-0.5
3,809,228	-		IAI47_17945	0.20	-2.7
3,809,228	-		IAI47_17945	0.20	-0.5
3,809,228	-		IAI47_17945	0.20	-1.0