Strain Fitness in Pantoea sp. MT58 around IAI47_12755

Experiment: Ying_Others16 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep B; time point 1
2,685,218	+		IAI47_12750	0.37	-0.3
2,685,218	+		IAI47_12750	0.37	+0.7
2,685,218	+		IAI47_12750	0.37	-0.2
2,685,219	-		IAI47_12750	0.37	-2.9
2,685,241	-		IAI47_12750	0.39	-0.4
2,685,252	-		IAI47_12750	0.40	+0.1
2,685,252	-		IAI47_12750	0.40	-0.1
2,685,252	-		IAI47_12750	0.40	+0.1
2,685,252	-		IAI47_12750	0.40	+1.7
2,685,264	+		IAI47_12750	0.41	-1.3
2,685,264	+		IAI47_12750	0.41	+3.1
2,685,264	+		IAI47_12750	0.41	-1.1
2,685,264	+		IAI47_12750	0.41	+0.4
2,685,265	-		IAI47_12750	0.41	+1.0
2,685,265	-		IAI47_12750	0.41	-0.9
2,685,265	-		IAI47_12750	0.41	+1.4
2,685,265	-		IAI47_12750	0.41	-0.9
2,685,265	-		IAI47_12750	0.41	-0.1
2,685,265	-		IAI47_12750	0.41	+0.1
2,685,265	-		IAI47_12750	0.41	+0.2
2,685,265	-		IAI47_12750	0.41	-1.4
2,685,308	-		IAI47_12750	0.45	+0.0
2,685,378	+		IAI47_12750	0.50	-0.5
2,685,378	+		IAI47_12750	0.50	+0.1
2,685,378	+		IAI47_12750	0.50	-0.3
2,685,378	+		IAI47_12750	0.50	+0.1
2,685,378	+		IAI47_12750	0.50	-0.9
2,685,379	-		IAI47_12750	0.50	-0.5
2,685,379	-		IAI47_12750	0.50	+0.1
2,685,382	+		IAI47_12750	0.51	-1.3
2,685,382	+		IAI47_12750	0.51	-1.4
2,685,382	+		IAI47_12750	0.51	+0.7
2,685,382	+		IAI47_12750	0.51	-0.0
2,685,382	+		IAI47_12750	0.51	-0.6
2,685,382	+		IAI47_12750	0.51	+0.1
2,685,382	+		IAI47_12750	0.51	+1.0
2,685,382	+		IAI47_12750	0.51	+0.1
2,685,382	+		IAI47_12750	0.51	+0.1
2,685,383	-		IAI47_12750	0.51	-0.4
2,685,383	-		IAI47_12750	0.51	+0.9
2,685,383	-		IAI47_12750	0.51	+1.0
2,685,383	-		IAI47_12750	0.51	+0.5
2,685,383	-		IAI47_12750	0.51	+0.0
2,685,383	-		IAI47_12750	0.51	-1.0
2,685,474	+		IAI47_12750	0.58	-2.1
2,685,475	-		IAI47_12750	0.58	+1.6
2,685,475	-		IAI47_12750	0.58	-2.6
2,685,475	-		IAI47_12750	0.58	-0.1
2,685,475	-		IAI47_12750	0.58	+0.7
2,685,477	+		IAI47_12750	0.59	-0.0
2,685,478	-		IAI47_12750	0.59	+0.1
2,685,478	-		IAI47_12750	0.59	+0.2
2,685,515	-		IAI47_12750	0.62	+0.1
2,685,515	-		IAI47_12750	0.62	-0.0
2,685,515	-		IAI47_12750	0.62	-1.0
2,685,515	-		IAI47_12750	0.62	+0.3
2,685,515	-		IAI47_12750	0.62	+0.4
2,685,515	-		IAI47_12750	0.62	+0.6
2,685,549	+		IAI47_12750	0.65	-2.1
2,685,549	+		IAI47_12750	0.65	-1.4
2,685,550	-		IAI47_12750	0.65	-0.1
2,685,550	-		IAI47_12750	0.65	+0.2
2,685,550	-		IAI47_12750	0.65	+2.6
2,685,550	-		IAI47_12750	0.65	-1.9
2,685,550	-		IAI47_12750	0.65	+0.7
2,685,664	+		IAI47_12750	0.74	+0.2
2,685,664	+		IAI47_12750	0.74	-1.3
2,685,665	-		IAI47_12750	0.74	+0.3
2,685,665	-		IAI47_12750	0.74	+0.3
2,685,678	+		IAI47_12750	0.75	+0.7
2,685,719	+		IAI47_12750	0.79	-1.9
2,685,719	+		IAI47_12750	0.79	-0.6
2,685,720	-		IAI47_12750	0.79	-0.3
2,685,743	+		IAI47_12750	0.81	+0.7
2,685,744	-		IAI47_12750	0.81	-0.9
2,685,745	+		IAI47_12750	0.81	+0.7
2,685,790	-		IAI47_12750	0.85	-0.2
2,685,831	+		IAI47_12750	0.88	+0.1
2,685,861	+				+1.0
2,685,861	+				-0.5
2,685,862	-				+1.0
2,685,901	-				-0.6
2,685,901	-				-0.9
2,685,912	+				+2.3
2,685,923	+				+0.9
2,685,923	+				-0.1
2,685,923	+				+0.1
2,685,924	-				-0.0
2,685,924	-				+0.9
2,685,924	-				+0.7
2,685,924	-				-0.0
2,685,973	+				-0.0
2,685,974	-				-0.0
2,685,974	-				+0.7
2,685,986	-				+0.3
2,685,986	-				-0.3
2,686,017	+				-0.9
2,686,018	-				-0.5
2,686,020	+				+0.4
2,686,020	+				-1.2
2,686,020	+				-1.1
2,686,069	+				+1.3
2,686,069	+				+0.2
2,686,069	+				-0.9
2,686,069	+				+0.9
2,686,074	+				-0.9
2,686,074	+				+0.3
2,686,074	+				-0.5
2,686,074	+				+0.1
2,686,074	+				-0.5
2,687,543	-				-0.7
2,687,549	-				+0.7
2,687,559	+				-1.8
2,687,560	-				+1.2
2,687,561	+				-0.0
2,687,561	+				+0.1
2,687,561	+				+0.1
2,687,562	-				-1.3
2,687,563	+				-0.0
2,687,563	+				-0.4
2,687,563	+				+0.7
2,687,565	+				-0.3
2,687,650	+				-3.1
2,687,651	-				-1.8
2,687,684	+				+0.3
2,687,687	+				-2.0
2,687,694	+				-0.1
2,687,695	-				-1.1
2,687,695	-				-2.3
2,687,701	+				-0.9
2,687,707	+				-1.4
2,687,802	+				+0.5
2,687,802	+				-0.3
2,687,802	+				-0.3
2,687,808	+				-0.2
2,687,808	+				-1.2
2,687,809	-				-0.3
2,687,824	-				-1.6
2,687,831	-				-1.9
2,687,831	-				+1.0
2,687,846	+				-1.3
2,687,847	-				-3.7
2,687,847	-				+0.1
2,687,875	+				-2.2
2,687,907	+				-1.5
2,687,908	-				+1.3
2,687,909	+				-0.3
2,687,910	-				-0.9
2,687,937	+				-2.1
2,687,937	+				-3.4
2,687,942	+				-2.9
2,687,961	+		IAI47_12760	0.11	-0.3
2,687,962	-		IAI47_12760	0.11	-0.7
2,688,015	+		IAI47_12760	0.16	-2.7
2,688,015	+		IAI47_12760	0.16	-3.0
2,688,016	-		IAI47_12760	0.16	-2.7
2,688,032	+		IAI47_12760	0.18	-1.9
2,688,032	+		IAI47_12760	0.18	-1.4
2,688,050	+		IAI47_12760	0.19	-1.8
2,688,084	+		IAI47_12760	0.22	-2.1
2,688,084	+		IAI47_12760	0.22	-0.3
2,688,084	+		IAI47_12760	0.22	-0.9
2,688,085	-		IAI47_12760	0.22	+1.7
2,688,085	-		IAI47_12760	0.22	-0.9
2,688,085	-		IAI47_12760	0.22	-1.9
2,688,085	-		IAI47_12760	0.22	-1.9
2,688,085	-		IAI47_12760	0.22	-0.6
2,688,101	+		IAI47_12760	0.24	+0.1
2,688,102	-		IAI47_12760	0.24	-1.3
2,688,190	-		IAI47_12760	0.32	-0.3
2,688,197	+		IAI47_12760	0.32	-0.6
2,688,198	-		IAI47_12760	0.32	-0.3
2,688,198	-		IAI47_12760	0.32	-1.4
2,688,201	+		IAI47_12760	0.33	-1.3
2,688,201	+		IAI47_12760	0.33	-0.3
2,688,201	+		IAI47_12760	0.33	-1.3
2,688,201	+		IAI47_12760	0.33	-1.5
2,688,201	+		IAI47_12760	0.33	-1.0
2,688,201	+		IAI47_12760	0.33	+0.3
2,688,201	+		IAI47_12760	0.33	-1.6
2,688,201	+		IAI47_12760	0.33	-0.3
2,688,202	-		IAI47_12760	0.33	+0.7
2,688,202	-		IAI47_12760	0.33	-1.1
2,688,202	-		IAI47_12760	0.33	-2.3
2,688,202	-		IAI47_12760	0.33	-1.9
2,688,213	+		IAI47_12760	0.34	-2.7
2,688,214	-		IAI47_12760	0.34	-0.0
2,688,267	+		IAI47_12760	0.39	-2.1
2,688,276	-		IAI47_12760	0.39	-1.6
2,688,293	+		IAI47_12760	0.41	+1.7
2,688,293	+		IAI47_12760	0.41	-1.9
2,688,294	-		IAI47_12760	0.41	-2.3
2,688,312	+		IAI47_12760	0.43	-0.9
2,688,312	+		IAI47_12760	0.43	-2.3
2,688,340	+		IAI47_12760	0.45	-0.5
2,688,341	-		IAI47_12760	0.45	-3.2
2,688,375	-		IAI47_12760	0.48	-0.3
2,688,375	-		IAI47_12760	0.48	-2.4
2,688,435	+		IAI47_12760	0.53	+1.3
2,688,435	+		IAI47_12760	0.53	-0.3
2,688,435	+		IAI47_12760	0.53	-0.9
2,688,435	+		IAI47_12760	0.53	+0.5
2,688,435	+		IAI47_12760	0.53	-2.7
2,688,435	+		IAI47_12760	0.53	-2.3
2,688,435	+		IAI47_12760	0.53	-1.3
2,688,435	+		IAI47_12760	0.53	+0.3
2,688,435	+		IAI47_12760	0.53	-1.3
2,688,435	+		IAI47_12760	0.53	-1.3
2,688,436	-		IAI47_12760	0.54	-1.6
2,688,436	-		IAI47_12760	0.54	-0.3
2,688,436	-		IAI47_12760	0.54	-1.1
2,688,436	-		IAI47_12760	0.54	-1.6
2,688,436	-		IAI47_12760	0.54	-0.3
2,688,436	-		IAI47_12760	0.54	-2.1
2,688,436	-		IAI47_12760	0.54	-0.6
2,688,436	-		IAI47_12760	0.54	-1.1
2,688,436	-		IAI47_12760	0.54	-2.2
2,688,436	-		IAI47_12760	0.54	+0.7
2,688,437	+		IAI47_12760	0.54	-2.1
2,688,437	+		IAI47_12760	0.54	-0.3
2,688,437	+		IAI47_12760	0.54	-1.4
2,688,437	+		IAI47_12760	0.54	-0.7
2,688,438	-		IAI47_12760	0.54	-0.3
2,688,438	-		IAI47_12760	0.54	+0.3
2,688,471	+		IAI47_12760	0.57	-1.3
2,688,471	+		IAI47_12760	0.57	-2.1
2,688,471	+		IAI47_12760	0.57	-0.3
2,688,472	-		IAI47_12760	0.57	-0.3
2,688,527	+		IAI47_12760	0.62	-2.9
2,688,527	+		IAI47_12760	0.62	-2.2
2,688,527	+		IAI47_12760	0.62	-0.0