Strain Fitness in Pantoea sp. MT58 around IAI47_07830

Experiment: Ying_Others16 rep B; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_07825 and IAI47_07830 are separated by 10 nucleotidesIAI47_07830 and IAI47_07835 are separated by 90 nucleotides IAI47_07825: IAI47_07825 - sugar ABC transporter ATP-binding protein, at 1,657,176 to 1,658,690 _07825 IAI47_07830: IAI47_07830 - ribose ABC transporter permease, at 1,658,701 to 1,659,681 _07830 IAI47_07835: IAI47_07835 - ABC transporter substrate-binding protein, at 1,659,772 to 1,660,710 _07835 Position (kb) 1658 1659 1660Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1657.726 kb on + strand, within IAI47_07825at 1657.726 kb on + strand, within IAI47_07825at 1657.727 kb on - strand, within IAI47_07825at 1657.727 kb on - strand, within IAI47_07825at 1657.760 kb on + strand, within IAI47_07825at 1657.761 kb on - strand, within IAI47_07825at 1657.761 kb on - strand, within IAI47_07825at 1657.764 kb on + strand, within IAI47_07825at 1657.764 kb on + strand, within IAI47_07825at 1657.764 kb on + strand, within IAI47_07825at 1657.765 kb on - strand, within IAI47_07825at 1657.765 kb on - strand, within IAI47_07825at 1657.765 kb on - strand, within IAI47_07825at 1657.765 kb on - strand, within IAI47_07825at 1657.765 kb on - strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.791 kb on + strand, within IAI47_07825at 1657.792 kb on - strand, within IAI47_07825at 1657.792 kb on - strand, within IAI47_07825at 1657.833 kb on + strand, within IAI47_07825at 1657.833 kb on + strand, within IAI47_07825at 1657.833 kb on + strand, within IAI47_07825at 1657.833 kb on + strand, within IAI47_07825at 1657.833 kb on + strand, within IAI47_07825at 1657.833 kb on + strand, within IAI47_07825at 1657.834 kb on - strand, within IAI47_07825at 1657.834 kb on - strand, within IAI47_07825at 1657.834 kb on - strand, within IAI47_07825at 1657.834 kb on - strand, within IAI47_07825at 1657.834 kb on - strand, within IAI47_07825at 1657.834 kb on - strand, within IAI47_07825at 1657.834 kb on - strand, within IAI47_07825at 1657.916 kb on + strand, within IAI47_07825at 1657.917 kb on - strand, within IAI47_07825at 1657.970 kb on + strand, within IAI47_07825at 1657.970 kb on + strand, within IAI47_07825at 1657.970 kb on + strand, within IAI47_07825at 1657.970 kb on + strand, within IAI47_07825at 1657.971 kb on - strand, within IAI47_07825at 1658.086 kb on + strand, within IAI47_07825at 1658.086 kb on + strand, within IAI47_07825at 1658.086 kb on + strand, within IAI47_07825at 1658.086 kb on + strand, within IAI47_07825at 1658.087 kb on - strand, within IAI47_07825at 1658.087 kb on - strand, within IAI47_07825at 1658.090 kb on + strand, within IAI47_07825at 1658.090 kb on + strand, within IAI47_07825at 1658.090 kb on + strand, within IAI47_07825at 1658.090 kb on + strand, within IAI47_07825at 1658.090 kb on + strand, within IAI47_07825at 1658.234 kb on + strand, within IAI47_07825at 1658.234 kb on + strand, within IAI47_07825at 1658.234 kb on + strand, within IAI47_07825at 1658.234 kb on + strand, within IAI47_07825at 1658.234 kb on + strand, within IAI47_07825at 1658.234 kb on + strand, within IAI47_07825at 1658.235 kb on - strand, within IAI47_07825at 1658.330 kb on + strand, within IAI47_07825at 1658.330 kb on + strand, within IAI47_07825at 1658.330 kb on + strand, within IAI47_07825at 1658.331 kb on - strand, within IAI47_07825at 1658.331 kb on - strand, within IAI47_07825at 1658.331 kb on - strand, within IAI47_07825at 1658.484 kb on + strand, within IAI47_07825at 1658.484 kb on + strand, within IAI47_07825at 1658.528 kb on - strand, within IAI47_07825at 1658.577 kb on + strandat 1658.639 kb on + strandat 1658.640 kb on - strandat 1658.640 kb on - strandat 1658.688 kb on + strandat 1658.688 kb on + strandat 1658.689 kb on - strandat 1658.689 kb on - strandat 1658.807 kb on + strand, within IAI47_07830at 1658.860 kb on - strand, within IAI47_07830at 1659.093 kb on + strand, within IAI47_07830at 1659.093 kb on + strand, within IAI47_07830at 1659.093 kb on + strand, within IAI47_07830at 1659.093 kb on + strand, within IAI47_07830at 1659.094 kb on - strand, within IAI47_07830at 1659.094 kb on - strand, within IAI47_07830at 1659.094 kb on - strand, within IAI47_07830at 1659.094 kb on - strand, within IAI47_07830at 1659.094 kb on - strand, within IAI47_07830at 1659.112 kb on + strand, within IAI47_07830at 1659.113 kb on - strand, within IAI47_07830at 1659.113 kb on - strand, within IAI47_07830at 1659.113 kb on - strand, within IAI47_07830at 1659.136 kb on + strand, within IAI47_07830at 1659.177 kb on + strand, within IAI47_07830at 1659.178 kb on - strand, within IAI47_07830at 1659.178 kb on - strand, within IAI47_07830at 1659.203 kb on - strand, within IAI47_07830at 1659.295 kb on - strand, within IAI47_07830at 1659.295 kb on - strand, within IAI47_07830at 1659.295 kb on - strand, within IAI47_07830at 1659.295 kb on - strand, within IAI47_07830at 1659.295 kb on - strand, within IAI47_07830at 1659.295 kb on - strand, within IAI47_07830at 1659.298 kb on + strand, within IAI47_07830at 1659.298 kb on + strand, within IAI47_07830at 1659.298 kb on + strand, within IAI47_07830at 1659.298 kb on + strand, within IAI47_07830at 1659.298 kb on + strand, within IAI47_07830at 1659.298 kb on + strand, within IAI47_07830at 1659.299 kb on - strand, within IAI47_07830at 1659.299 kb on - strand, within IAI47_07830at 1659.299 kb on - strand, within IAI47_07830at 1659.299 kb on - strand, within IAI47_07830at 1659.427 kb on + strand, within IAI47_07830at 1659.513 kb on + strand, within IAI47_07830at 1659.552 kb on + strand, within IAI47_07830at 1659.568 kb on - strand, within IAI47_07830at 1659.568 kb on - strand, within IAI47_07830at 1659.595 kb on + strandat 1659.595 kb on + strandat 1659.655 kb on + strandat 1659.655 kb on + strandat 1659.655 kb on + strandat 1659.655 kb on + strandat 1659.656 kb on - strandat 1659.656 kb on - strandat 1659.656 kb on - strandat 1659.686 kb on + strandat 1659.686 kb on + strandat 1659.687 kb on - strandat 1659.703 kb on + strandat 1659.703 kb on + strandat 1659.734 kb on + strandat 1659.735 kb on - strandat 1659.735 kb on - strandat 1659.771 kb on + strandat 1659.771 kb on + strandat 1659.772 kb on - strandat 1659.772 kb on - strandat 1659.772 kb on - strandat 1659.772 kb on - strandat 1659.781 kb on - strandat 1659.906 kb on + strand, within IAI47_07835at 1659.906 kb on + strand, within IAI47_07835at 1659.906 kb on + strand, within IAI47_07835at 1659.907 kb on - strand, within IAI47_07835at 1659.907 kb on - strand, within IAI47_07835at 1659.945 kb on + strand, within IAI47_07835at 1659.946 kb on - strand, within IAI47_07835at 1659.946 kb on - strand, within IAI47_07835at 1659.951 kb on + strand, within IAI47_07835at 1659.951 kb on + strand, within IAI47_07835at 1660.009 kb on - strand, within IAI47_07835at 1660.014 kb on + strand, within IAI47_07835at 1660.014 kb on + strand, within IAI47_07835at 1660.014 kb on + strand, within IAI47_07835at 1660.015 kb on - strand, within IAI47_07835at 1660.038 kb on + strand, within IAI47_07835at 1660.039 kb on - strand, within IAI47_07835at 1660.101 kb on + strand, within IAI47_07835at 1660.107 kb on - strand, within IAI47_07835at 1660.107 kb on - strand, within IAI47_07835at 1660.107 kb on - strand, within IAI47_07835at 1660.162 kb on - strand, within IAI47_07835at 1660.188 kb on + strand, within IAI47_07835at 1660.189 kb on - strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.192 kb on + strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.193 kb on - strand, within IAI47_07835at 1660.194 kb on + strand, within IAI47_07835at 1660.194 kb on + strand, within IAI47_07835at 1660.195 kb on - strand, within IAI47_07835at 1660.195 kb on - strand, within IAI47_07835at 1660.483 kb on - strand, within IAI47_07835at 1660.531 kb on - strand, within IAI47_07835at 1660.531 kb on - strand, within IAI47_07835at 1660.604 kb on - strand, within IAI47_07835at 1660.671 kb on + strandat 1660.671 kb on + strandat 1660.674 kb on + strandat 1660.674 kb on + strandat 1660.674 kb on + strandat 1660.674 kb on + strandat 1660.675 kb on - strandat 1660.675 kb on - strandat 1660.675 kb on - strandat 1660.675 kb on - strandat 1660.677 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1
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1,657,726 + IAI47_07825 0.36 -0.9
1,657,726 + IAI47_07825 0.36 +2.7
1,657,727 - IAI47_07825 0.36 -0.7
1,657,727 - IAI47_07825 0.36 -0.9
1,657,760 + IAI47_07825 0.39 +0.3
1,657,761 - IAI47_07825 0.39 +0.7
1,657,761 - IAI47_07825 0.39 +0.9
1,657,764 + IAI47_07825 0.39 +0.7
1,657,764 + IAI47_07825 0.39 -0.9
1,657,764 + IAI47_07825 0.39 +0.5
1,657,765 - IAI47_07825 0.39 -1.1
1,657,765 - IAI47_07825 0.39 +0.3
1,657,765 - IAI47_07825 0.39 -0.1
1,657,765 - IAI47_07825 0.39 -1.7
1,657,765 - IAI47_07825 0.39 -0.7
1,657,791 + IAI47_07825 0.41 +0.1
1,657,791 + IAI47_07825 0.41 +0.3
1,657,791 + IAI47_07825 0.41 +0.0
1,657,791 + IAI47_07825 0.41 -0.3
1,657,791 + IAI47_07825 0.41 +0.1
1,657,791 + IAI47_07825 0.41 -0.3
1,657,791 + IAI47_07825 0.41 +1.5
1,657,791 + IAI47_07825 0.41 +0.5
1,657,791 + IAI47_07825 0.41 -0.4
1,657,792 - IAI47_07825 0.41 +0.7
1,657,792 - IAI47_07825 0.41 -0.2
1,657,833 + IAI47_07825 0.43 +0.7
1,657,833 + IAI47_07825 0.43 +0.5
1,657,833 + IAI47_07825 0.43 -1.1
1,657,833 + IAI47_07825 0.43 -1.9
1,657,833 + IAI47_07825 0.43 -0.9
1,657,833 + IAI47_07825 0.43 -1.7
1,657,834 - IAI47_07825 0.43 -1.9
1,657,834 - IAI47_07825 0.43 +2.3
1,657,834 - IAI47_07825 0.43 -0.1
1,657,834 - IAI47_07825 0.43 +0.9
1,657,834 - IAI47_07825 0.43 -1.4
1,657,834 - IAI47_07825 0.43 +0.3
1,657,834 - IAI47_07825 0.43 -0.2
1,657,916 + IAI47_07825 0.49 +0.7
1,657,917 - IAI47_07825 0.49 -0.8
1,657,970 + IAI47_07825 0.52 +0.1
1,657,970 + IAI47_07825 0.52 +0.7
1,657,970 + IAI47_07825 0.52 +0.5
1,657,970 + IAI47_07825 0.52 +0.7
1,657,971 - IAI47_07825 0.52 -0.7
1,658,086 + IAI47_07825 0.60 +0.7
1,658,086 + IAI47_07825 0.60 +1.7
1,658,086 + IAI47_07825 0.60 -1.5
1,658,086 + IAI47_07825 0.60 +0.3
1,658,087 - IAI47_07825 0.60 -1.8
1,658,087 - IAI47_07825 0.60 -0.3
1,658,090 + IAI47_07825 0.60 +0.8
1,658,090 + IAI47_07825 0.60 +0.5
1,658,090 + IAI47_07825 0.60 +0.9
1,658,090 + IAI47_07825 0.60 -1.7
1,658,090 + IAI47_07825 0.60 -1.7
1,658,234 + IAI47_07825 0.70 +1.4
1,658,234 + IAI47_07825 0.70 -1.3
1,658,234 + IAI47_07825 0.70 +0.5
1,658,234 + IAI47_07825 0.70 +0.3
1,658,234 + IAI47_07825 0.70 +0.2
1,658,234 + IAI47_07825 0.70 -2.3
1,658,235 - IAI47_07825 0.70 +0.2
1,658,330 + IAI47_07825 0.76 +1.6
1,658,330 + IAI47_07825 0.76 +0.2
1,658,330 + IAI47_07825 0.76 -0.7
1,658,331 - IAI47_07825 0.76 +1.0
1,658,331 - IAI47_07825 0.76 +0.7
1,658,331 - IAI47_07825 0.76 +0.1
1,658,484 + IAI47_07825 0.86 -0.5
1,658,484 + IAI47_07825 0.86 -0.7
1,658,528 - IAI47_07825 0.89 +0.3
1,658,577 + +0.1
1,658,639 + +0.1
1,658,640 - -1.3
1,658,640 - +0.9
1,658,688 + +0.0
1,658,688 + +0.7
1,658,689 - -0.1
1,658,689 - +0.3
1,658,807 + IAI47_07830 0.11 +1.4
1,658,860 - IAI47_07830 0.16 -0.7
1,659,093 + IAI47_07830 0.40 +0.7
1,659,093 + IAI47_07830 0.40 -0.9
1,659,093 + IAI47_07830 0.40 +1.0
1,659,093 + IAI47_07830 0.40 +0.3
1,659,094 - IAI47_07830 0.40 +0.1
1,659,094 - IAI47_07830 0.40 -1.1
1,659,094 - IAI47_07830 0.40 -0.3
1,659,094 - IAI47_07830 0.40 +0.5
1,659,094 - IAI47_07830 0.40 +0.8
1,659,112 + IAI47_07830 0.42 -0.1
1,659,113 - IAI47_07830 0.42 -1.2
1,659,113 - IAI47_07830 0.42 +0.7
1,659,113 - IAI47_07830 0.42 +0.0
1,659,136 + IAI47_07830 0.44 -0.8
1,659,177 + IAI47_07830 0.49 +1.0
1,659,178 - IAI47_07830 0.49 +0.5
1,659,178 - IAI47_07830 0.49 -0.1
1,659,203 - IAI47_07830 0.51 +0.2
1,659,295 - IAI47_07830 0.61 +0.2
1,659,295 - IAI47_07830 0.61 +0.6
1,659,295 - IAI47_07830 0.61 -0.3
1,659,295 - IAI47_07830 0.61 +1.1
1,659,295 - IAI47_07830 0.61 +0.1
1,659,295 - IAI47_07830 0.61 +0.7
1,659,298 + IAI47_07830 0.61 +1.9
1,659,298 + IAI47_07830 0.61 -0.7
1,659,298 + IAI47_07830 0.61 +0.7
1,659,298 + IAI47_07830 0.61 -0.8
1,659,298 + IAI47_07830 0.61 -0.1
1,659,298 + IAI47_07830 0.61 +0.2
1,659,299 - IAI47_07830 0.61 +0.3
1,659,299 - IAI47_07830 0.61 +0.1
1,659,299 - IAI47_07830 0.61 +0.2
1,659,299 - IAI47_07830 0.61 -1.3
1,659,427 + IAI47_07830 0.74 -0.2
1,659,513 + IAI47_07830 0.83 -1.4
1,659,552 + IAI47_07830 0.87 +0.3
1,659,568 - IAI47_07830 0.88 +0.9
1,659,568 - IAI47_07830 0.88 +1.2
1,659,595 + +0.3
1,659,595 + -0.3
1,659,655 + -1.0
1,659,655 + -0.2
1,659,655 + -0.6
1,659,655 + +1.1
1,659,656 - +0.5
1,659,656 - +0.4
1,659,656 - -0.3
1,659,686 + -0.3
1,659,686 + -0.9
1,659,687 - +0.2
1,659,703 + +1.3
1,659,703 + +0.7
1,659,734 + -0.3
1,659,735 - +1.3
1,659,735 - -0.2
1,659,771 + +0.5
1,659,771 + -1.4
1,659,772 - -1.4
1,659,772 - +1.3
1,659,772 - +0.8
1,659,772 - +0.2
1,659,781 - +0.7
1,659,906 + IAI47_07835 0.14 +0.4
1,659,906 + IAI47_07835 0.14 +0.7
1,659,906 + IAI47_07835 0.14 -0.9
1,659,907 - IAI47_07835 0.14 +0.7
1,659,907 - IAI47_07835 0.14 +0.7
1,659,945 + IAI47_07835 0.18 -1.3
1,659,946 - IAI47_07835 0.19 +3.0
1,659,946 - IAI47_07835 0.19 +0.7
1,659,951 + IAI47_07835 0.19 -0.1
1,659,951 + IAI47_07835 0.19 +1.1
1,660,009 - IAI47_07835 0.25 -0.3
1,660,014 + IAI47_07835 0.26 +0.9
1,660,014 + IAI47_07835 0.26 -2.3
1,660,014 + IAI47_07835 0.26 -1.4
1,660,015 - IAI47_07835 0.26 -0.1
1,660,038 + IAI47_07835 0.28 -1.0
1,660,039 - IAI47_07835 0.28 +1.4
1,660,101 + IAI47_07835 0.35 -0.8
1,660,107 - IAI47_07835 0.36 -0.6
1,660,107 - IAI47_07835 0.36 +0.7
1,660,107 - IAI47_07835 0.36 +0.7
1,660,162 - IAI47_07835 0.42 -0.7
1,660,188 + IAI47_07835 0.44 -0.3
1,660,189 - IAI47_07835 0.44 -0.8
1,660,192 + IAI47_07835 0.45 +0.0
1,660,192 + IAI47_07835 0.45 +1.0
1,660,192 + IAI47_07835 0.45 -0.1
1,660,192 + IAI47_07835 0.45 +1.1
1,660,192 + IAI47_07835 0.45 -2.1
1,660,192 + IAI47_07835 0.45 +0.1
1,660,192 + IAI47_07835 0.45 -0.6
1,660,192 + IAI47_07835 0.45 -0.7
1,660,192 + IAI47_07835 0.45 +1.3
1,660,193 - IAI47_07835 0.45 +1.2
1,660,193 - IAI47_07835 0.45 +0.3
1,660,193 - IAI47_07835 0.45 +1.1
1,660,193 - IAI47_07835 0.45 -0.2
1,660,193 - IAI47_07835 0.45 +0.4
1,660,193 - IAI47_07835 0.45 -1.4
1,660,193 - IAI47_07835 0.45 +0.1
1,660,193 - IAI47_07835 0.45 -0.7
1,660,193 - IAI47_07835 0.45 -1.3
1,660,194 + IAI47_07835 0.45 -0.7
1,660,194 + IAI47_07835 0.45 -0.1
1,660,195 - IAI47_07835 0.45 +0.3
1,660,195 - IAI47_07835 0.45 +1.7
1,660,483 - IAI47_07835 0.76 +0.3
1,660,531 - IAI47_07835 0.81 +0.0
1,660,531 - IAI47_07835 0.81 -1.8
1,660,604 - IAI47_07835 0.89 -0.7
1,660,671 + -0.2
1,660,671 + -0.5
1,660,674 + +0.3
1,660,674 + +0.4
1,660,674 + -0.0
1,660,674 + -2.0
1,660,675 - +1.2
1,660,675 - +0.3
1,660,675 - +1.8
1,660,675 - -0.8
1,660,677 + +0.4

Or see this region's nucleotide sequence