Experiment: Ying_Others16 rep B; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_03925 and IAI47_03930 overlap by 4 nucleotides IAI47_03930 and IAI47_03935 are separated by 191 nucleotides IAI47_03935 and IAI47_03940 overlap by 4 nucleotides
IAI47_03925: IAI47_03925 - prolipoprotein diacylglyceryl transferase, at 818,640 to 819,521
_03925
IAI47_03930: IAI47_03930 - thymidylate synthase, at 819,518 to 820,312
_03930
IAI47_03935: IAI47_03935 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 820,504 to 820,974
_03935
IAI47_03940: IAI47_03940 - prepilin peptidase-dependent protein, at 820,971 to 821,498
_03940
Position (kb) 819
820
821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 818.570 kb on + strand at 818.570 kb on + strand at 818.570 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 818.590 kb on + strand at 820.320 kb on + strand at 820.320 kb on + strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.321 kb on - strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.324 kb on + strand at 820.325 kb on - strand at 820.331 kb on + strand at 820.332 kb on - strand at 820.332 kb on - strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.429 kb on + strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.430 kb on - strand at 820.459 kb on - strand at 820.485 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.516 kb on + strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.517 kb on - strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.520 kb on + strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.521 kb on - strand at 820.530 kb on + strand at 820.530 kb on + strand at 820.531 kb on - strand at 820.531 kb on - strand at 820.531 kb on - strand at 820.692 kb on + strand, within IAI47_03935 at 820.693 kb on - strand, within IAI47_03935 at 820.706 kb on + strand, within IAI47_03935 at 820.706 kb on + strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.707 kb on - strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.734 kb on + strand, within IAI47_03935 at 820.735 kb on - strand, within IAI47_03935 at 820.787 kb on - strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.819 kb on + strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.820 kb on - strand, within IAI47_03935 at 820.846 kb on + strand, within IAI47_03935 at 820.846 kb on + strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.847 kb on - strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.907 kb on + strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.908 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 820.918 kb on - strand, within IAI47_03935 at 821.116 kb on + strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.117 kb on - strand, within IAI47_03940 at 821.164 kb on - strand, within IAI47_03940 at 821.164 kb on - strand, within IAI47_03940 at 821.280 kb on + strand, within IAI47_03940 at 821.280 kb on + strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.281 kb on - strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.283 kb on + strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940 at 821.284 kb on - strand, within IAI47_03940
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep B; time point 1 remove 818,570 + +1.8 818,570 + -0.7 818,570 + +0.0 818,590 + -1.1 818,590 + -2.2 818,590 + -1.8 818,590 + +0.7 818,590 + -1.5 818,590 + +0.7 820,320 + +0.5 820,320 + -0.6 820,321 - -1.2 820,321 - -0.5 820,321 - -0.6 820,324 + +0.8 820,324 + -0.4 820,324 + -0.5 820,324 + -0.4 820,325 - -0.3 820,331 + +1.0 820,332 - -1.6 820,332 - +1.5 820,429 + +1.3 820,429 + -0.5 820,429 + -0.1 820,430 - +0.0 820,430 - -0.2 820,430 - -0.2 820,430 - -0.6 820,459 - -0.8 820,485 + +3.0 820,516 + -0.7 820,516 + -0.3 820,516 + -0.4 820,516 + +1.8 820,516 + +0.4 820,516 + +0.3 820,516 + +0.2 820,516 + -0.0 820,517 - +1.1 820,517 - +0.2 820,517 - +0.1 820,517 - +0.6 820,517 - +0.3 820,517 - +0.1 820,517 - -0.4 820,517 - +0.8 820,517 - -0.5 820,520 + +0.9 820,520 + -0.8 820,520 + -0.4 820,520 + +0.1 820,520 + +0.8 820,520 + +0.4 820,520 + +2.3 820,520 + -0.5 820,520 + +0.1 820,520 + -2.4 820,520 + +1.5 820,521 - +0.2 820,521 - +0.3 820,521 - -0.6 820,521 - +0.2 820,521 - -1.6 820,521 - +1.4 820,521 - -1.6 820,521 - +0.2 820,521 - -1.2 820,521 - -1.3 820,521 - -0.8 820,521 - -1.2 820,521 - -0.5 820,521 - -0.7 820,521 - +0.1 820,521 - -0.7 820,521 - +0.4 820,521 - -0.4 820,530 + -1.4 820,530 + +1.0 820,531 - -1.2 820,531 - -0.2 820,531 - +0.1 820,692 + IAI47_03935 0.40 +1.0 820,693 - IAI47_03935 0.40 -1.5 820,706 + IAI47_03935 0.43 -0.1 820,706 + IAI47_03935 0.43 -0.8 820,707 - IAI47_03935 0.43 -0.1 820,707 - IAI47_03935 0.43 -0.9 820,707 - IAI47_03935 0.43 -1.2 820,707 - IAI47_03935 0.43 +1.3 820,734 + IAI47_03935 0.49 -0.4 820,734 + IAI47_03935 0.49 -0.8 820,734 + IAI47_03935 0.49 -1.2 820,735 - IAI47_03935 0.49 +1.3 820,787 - IAI47_03935 0.60 -1.2 820,819 + IAI47_03935 0.67 -3.2 820,819 + IAI47_03935 0.67 -0.3 820,819 + IAI47_03935 0.67 -2.2 820,819 + IAI47_03935 0.67 -0.1 820,819 + IAI47_03935 0.67 -0.8 820,820 - IAI47_03935 0.67 +1.4 820,820 - IAI47_03935 0.67 +2.0 820,820 - IAI47_03935 0.67 -0.1 820,820 - IAI47_03935 0.67 -0.6 820,820 - IAI47_03935 0.67 +0.3 820,820 - IAI47_03935 0.67 +0.8 820,846 + IAI47_03935 0.73 +0.1 820,846 + IAI47_03935 0.73 -0.8 820,847 - IAI47_03935 0.73 -0.2 820,847 - IAI47_03935 0.73 -0.5 820,847 - IAI47_03935 0.73 -0.2 820,847 - IAI47_03935 0.73 -0.2 820,847 - IAI47_03935 0.73 -0.5 820,907 + IAI47_03935 0.86 +0.8 820,907 + IAI47_03935 0.86 -2.6 820,907 + IAI47_03935 0.86 -1.2 820,908 - IAI47_03935 0.86 -1.0 820,908 - IAI47_03935 0.86 -0.8 820,908 - IAI47_03935 0.86 -0.2 820,918 - IAI47_03935 0.88 -2.3 820,918 - IAI47_03935 0.88 +0.8 820,918 - IAI47_03935 0.88 -0.8 820,918 - IAI47_03935 0.88 -1.2 820,918 - IAI47_03935 0.88 -1.4 820,918 - IAI47_03935 0.88 +0.2 820,918 - IAI47_03935 0.88 +1.8 821,116 + IAI47_03940 0.27 -0.1 821,117 - IAI47_03940 0.28 -0.7 821,117 - IAI47_03940 0.28 +0.7 821,117 - IAI47_03940 0.28 -1.8 821,164 - IAI47_03940 0.37 +0.1 821,164 - IAI47_03940 0.37 +0.9 821,280 + IAI47_03940 0.59 +0.8 821,280 + IAI47_03940 0.59 -0.3 821,281 - IAI47_03940 0.59 -0.5 821,281 - IAI47_03940 0.59 -0.2 821,281 - IAI47_03940 0.59 -2.2 821,281 - IAI47_03940 0.59 -0.5 821,283 + IAI47_03940 0.59 -2.8 821,283 + IAI47_03940 0.59 -0.2 821,283 + IAI47_03940 0.59 +0.6 821,283 + IAI47_03940 0.59 -0.6 821,283 + IAI47_03940 0.59 +0.4 821,283 + IAI47_03940 0.59 -2.1 821,283 + IAI47_03940 0.59 -2.1 821,283 + IAI47_03940 0.59 -0.6 821,284 - IAI47_03940 0.59 +0.1 821,284 - IAI47_03940 0.59 +0.1 821,284 - IAI47_03940 0.59 +0.5 821,284 - IAI47_03940 0.59 +1.3
Or see this region's nucleotide sequence