Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_18875 and IAI47_18880 are separated by 39 nucleotides IAI47_18880 and IAI47_18885 are separated by 95 nucleotides IAI47_18885 and IAI47_18890 overlap by 49 nucleotides
IAI47_18875: IAI47_18875 - alpha/beta hydrolase, at 8,177 to 9,676
_18875
IAI47_18880: IAI47_18880 - aldo/keto reductase family oxidoreductase, at 9,716 to 10,570
_18880
IAI47_18885: IAI47_18885 - LysR family transcriptional regulator, at 10,666 to 11,625
_18885
IAI47_18890: IAI47_18890 - ATP-dependent helicase, at 11,577 to 16,127
_18890
Position (kb) 10
11
12 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.717 kb on + strand at 9.718 kb on - strand at 9.718 kb on - strand at 9.718 kb on - strand at 9.806 kb on - strand, within IAI47_18880 at 9.806 kb on - strand, within IAI47_18880 at 9.823 kb on + strand, within IAI47_18880 at 9.824 kb on - strand, within IAI47_18880 at 9.824 kb on - strand, within IAI47_18880 at 9.898 kb on + strand, within IAI47_18880 at 9.898 kb on + strand, within IAI47_18880 at 9.951 kb on + strand, within IAI47_18880 at 9.951 kb on + strand, within IAI47_18880 at 9.952 kb on - strand, within IAI47_18880 at 9.952 kb on - strand, within IAI47_18880 at 9.952 kb on - strand, within IAI47_18880 at 10.012 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.014 kb on + strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.015 kb on - strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.018 kb on + strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.019 kb on - strand, within IAI47_18880 at 10.118 kb on + strand, within IAI47_18880 at 10.162 kb on + strand, within IAI47_18880 at 10.162 kb on + strand, within IAI47_18880 at 10.162 kb on + strand, within IAI47_18880 at 10.183 kb on + strand, within IAI47_18880 at 10.184 kb on - strand, within IAI47_18880 at 10.184 kb on - strand, within IAI47_18880 at 10.184 kb on - strand, within IAI47_18880 at 10.234 kb on + strand, within IAI47_18880 at 10.234 kb on + strand, within IAI47_18880 at 10.311 kb on - strand, within IAI47_18880 at 10.347 kb on + strand, within IAI47_18880 at 10.348 kb on - strand, within IAI47_18880 at 10.348 kb on - strand, within IAI47_18880 at 10.364 kb on + strand, within IAI47_18880 at 10.390 kb on - strand, within IAI47_18880 at 10.408 kb on + strand, within IAI47_18880 at 10.409 kb on - strand, within IAI47_18880 at 10.448 kb on + strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.449 kb on - strand, within IAI47_18880 at 10.497 kb on - strand at 10.497 kb on - strand at 10.513 kb on - strand at 10.548 kb on + strand at 10.548 kb on + strand at 10.548 kb on + strand at 10.549 kb on - strand at 10.560 kb on + strand at 10.561 kb on + strand at 10.561 kb on + strand at 10.562 kb on - strand at 10.592 kb on - strand at 10.592 kb on - strand at 10.592 kb on - strand at 10.602 kb on + strand at 10.603 kb on - strand at 10.613 kb on + strand at 10.613 kb on + strand at 10.626 kb on - strand at 10.651 kb on - strand at 10.651 kb on - strand at 10.698 kb on - strand at 10.897 kb on - strand, within IAI47_18885 at 10.897 kb on - strand, within IAI47_18885 at 10.897 kb on - strand, within IAI47_18885 at 10.929 kb on + strand, within IAI47_18885 at 10.929 kb on + strand, within IAI47_18885 at 10.929 kb on + strand, within IAI47_18885 at 10.929 kb on + strand, within IAI47_18885 at 10.930 kb on - strand, within IAI47_18885 at 10.930 kb on - strand, within IAI47_18885 at 10.930 kb on - strand, within IAI47_18885 at 10.932 kb on + strand, within IAI47_18885 at 10.932 kb on + strand, within IAI47_18885 at 10.932 kb on + strand, within IAI47_18885 at 10.932 kb on + strand, within IAI47_18885 at 10.986 kb on - strand, within IAI47_18885 at 11.060 kb on + strand, within IAI47_18885 at 11.060 kb on + strand, within IAI47_18885 at 11.060 kb on + strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.061 kb on - strand, within IAI47_18885 at 11.101 kb on + strand, within IAI47_18885 at 11.101 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.135 kb on + strand, within IAI47_18885 at 11.136 kb on - strand, within IAI47_18885 at 11.136 kb on - strand, within IAI47_18885 at 11.136 kb on - strand, within IAI47_18885 at 11.136 kb on - strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.139 kb on + strand, within IAI47_18885 at 11.140 kb on - strand, within IAI47_18885 at 11.140 kb on - strand, within IAI47_18885 at 11.140 kb on - strand, within IAI47_18885 at 11.140 kb on - strand, within IAI47_18885 at 11.185 kb on + strand, within IAI47_18885 at 11.185 kb on + strand, within IAI47_18885 at 11.197 kb on + strand, within IAI47_18885 at 11.226 kb on + strand, within IAI47_18885 at 11.226 kb on + strand, within IAI47_18885 at 11.227 kb on - strand, within IAI47_18885 at 11.352 kb on + strand, within IAI47_18885 at 11.353 kb on - strand, within IAI47_18885 at 11.393 kb on + strand, within IAI47_18885 at 11.393 kb on + strand, within IAI47_18885 at 11.394 kb on - strand, within IAI47_18885 at 11.398 kb on + strand, within IAI47_18885 at 11.398 kb on + strand, within IAI47_18885 at 11.398 kb on + strand, within IAI47_18885 at 11.399 kb on - strand, within IAI47_18885 at 11.399 kb on - strand, within IAI47_18885 at 11.494 kb on + strand, within IAI47_18885 at 11.497 kb on + strand, within IAI47_18885 at 11.498 kb on - strand, within IAI47_18885 at 11.530 kb on - strand at 11.550 kb on - strand at 11.582 kb on + strand at 11.582 kb on + strand at 11.582 kb on + strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.583 kb on - strand at 11.585 kb on - strand at 11.670 kb on + strand at 11.671 kb on - strand at 11.699 kb on + strand at 11.773 kb on - strand at 11.773 kb on - strand at 11.773 kb on - strand at 11.781 kb on - strand at 11.797 kb on + strand at 11.797 kb on + strand at 11.797 kb on + strand at 11.798 kb on - strand at 11.798 kb on - strand at 11.798 kb on - strand at 11.802 kb on + strand at 11.802 kb on + strand at 11.803 kb on - strand at 11.803 kb on - strand at 11.803 kb on - strand at 11.858 kb on + strand at 11.859 kb on - strand at 11.928 kb on + strand at 11.928 kb on + strand at 11.928 kb on + strand at 11.929 kb on - strand at 11.955 kb on - strand at 11.955 kb on - strand at 12.066 kb on + strand, within IAI47_18890 at 12.189 kb on - strand, within IAI47_18890 at 12.230 kb on + strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.231 kb on - strand, within IAI47_18890 at 12.270 kb on + strand, within IAI47_18890 at 12.271 kb on - strand, within IAI47_18890 at 12.340 kb on - strand, within IAI47_18890 at 12.340 kb on - strand, within IAI47_18890 at 12.349 kb on - strand, within IAI47_18890 at 12.376 kb on + strand, within IAI47_18890 at 12.376 kb on + strand, within IAI47_18890 at 12.376 kb on + strand, within IAI47_18890 at 12.377 kb on - strand, within IAI47_18890 at 12.486 kb on + strand, within IAI47_18890 at 12.498 kb on - strand, within IAI47_18890 at 12.510 kb on + strand, within IAI47_18890 at 12.511 kb on - strand, within IAI47_18890 at 12.518 kb on + strand, within IAI47_18890 at 12.518 kb on + strand, within IAI47_18890 at 12.519 kb on - strand, within IAI47_18890 at 12.611 kb on + strand, within IAI47_18890 at 12.612 kb on - strand, within IAI47_18890 at 12.612 kb on - strand, within IAI47_18890 at 12.612 kb on - strand, within IAI47_18890 at 12.612 kb on - strand, within IAI47_18890
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 9,717 + -0.5 9,717 + -1.5 9,717 + -0.3 9,717 + +0.6 9,717 + +0.5 9,717 + +0.0 9,717 + -2.0 9,717 + +0.4 9,718 - +0.6 9,718 - +0.8 9,718 - +0.3 9,806 - IAI47_18880 0.11 -1.0 9,806 - IAI47_18880 0.11 -0.8 9,823 + IAI47_18880 0.13 -0.3 9,824 - IAI47_18880 0.13 -0.6 9,824 - IAI47_18880 0.13 +1.0 9,898 + IAI47_18880 0.21 +0.1 9,898 + IAI47_18880 0.21 +1.4 9,951 + IAI47_18880 0.27 -0.4 9,951 + IAI47_18880 0.27 -0.2 9,952 - IAI47_18880 0.28 +0.5 9,952 - IAI47_18880 0.28 +0.0 9,952 - IAI47_18880 0.28 +0.1 10,012 + IAI47_18880 0.35 -0.8 10,014 + IAI47_18880 0.35 +0.8 10,014 + IAI47_18880 0.35 -2.0 10,014 + IAI47_18880 0.35 +1.6 10,014 + IAI47_18880 0.35 +0.5 10,014 + IAI47_18880 0.35 +1.4 10,014 + IAI47_18880 0.35 -0.5 10,014 + IAI47_18880 0.35 -1.8 10,015 - IAI47_18880 0.35 +0.3 10,015 - IAI47_18880 0.35 +1.4 10,015 - IAI47_18880 0.35 +0.0 10,015 - IAI47_18880 0.35 -0.0 10,015 - IAI47_18880 0.35 -0.3 10,015 - IAI47_18880 0.35 -0.1 10,015 - IAI47_18880 0.35 +0.0 10,015 - IAI47_18880 0.35 +2.5 10,015 - IAI47_18880 0.35 +0.4 10,015 - IAI47_18880 0.35 +0.8 10,018 + IAI47_18880 0.35 -1.4 10,018 + IAI47_18880 0.35 +0.4 10,018 + IAI47_18880 0.35 -1.3 10,018 + IAI47_18880 0.35 -0.8 10,018 + IAI47_18880 0.35 -1.1 10,019 - IAI47_18880 0.35 -1.7 10,019 - IAI47_18880 0.35 +0.5 10,019 - IAI47_18880 0.35 -0.0 10,019 - IAI47_18880 0.35 -0.3 10,019 - IAI47_18880 0.35 -0.3 10,019 - IAI47_18880 0.35 -0.2 10,019 - IAI47_18880 0.35 -0.3 10,118 + IAI47_18880 0.47 +0.6 10,162 + IAI47_18880 0.52 -0.3 10,162 + IAI47_18880 0.52 +0.2 10,162 + IAI47_18880 0.52 -1.5 10,183 + IAI47_18880 0.55 -0.4 10,184 - IAI47_18880 0.55 -0.2 10,184 - IAI47_18880 0.55 +0.4 10,184 - IAI47_18880 0.55 -0.1 10,234 + IAI47_18880 0.61 +1.3 10,234 + IAI47_18880 0.61 -0.7 10,311 - IAI47_18880 0.70 +0.4 10,347 + IAI47_18880 0.74 -1.8 10,348 - IAI47_18880 0.74 -0.6 10,348 - IAI47_18880 0.74 +1.1 10,364 + IAI47_18880 0.76 +0.8 10,390 - IAI47_18880 0.79 -0.2 10,408 + IAI47_18880 0.81 +0.8 10,409 - IAI47_18880 0.81 -0.3 10,448 + IAI47_18880 0.86 +0.2 10,449 - IAI47_18880 0.86 -0.5 10,449 - IAI47_18880 0.86 -0.5 10,449 - IAI47_18880 0.86 -0.4 10,449 - IAI47_18880 0.86 +0.8 10,449 - IAI47_18880 0.86 -1.4 10,497 - -0.9 10,497 - +0.2 10,513 - +0.3 10,548 + -0.6 10,548 + -0.6 10,548 + -0.2 10,549 - -1.0 10,560 + +0.8 10,561 + -0.6 10,561 + +0.6 10,562 - +0.5 10,592 - +0.6 10,592 - +0.3 10,592 - -0.8 10,602 + +0.4 10,603 - -0.7 10,613 + -0.8 10,613 + +0.3 10,626 - +0.5 10,651 - +0.3 10,651 - +0.0 10,698 - +1.4 10,897 - IAI47_18885 0.24 +0.7 10,897 - IAI47_18885 0.24 -1.0 10,897 - IAI47_18885 0.24 -0.8 10,929 + IAI47_18885 0.27 +0.1 10,929 + IAI47_18885 0.27 -0.4 10,929 + IAI47_18885 0.27 -0.8 10,929 + IAI47_18885 0.27 -0.7 10,930 - IAI47_18885 0.28 -1.4 10,930 - IAI47_18885 0.28 +0.2 10,930 - IAI47_18885 0.28 +0.6 10,932 + IAI47_18885 0.28 +0.0 10,932 + IAI47_18885 0.28 -1.4 10,932 + IAI47_18885 0.28 -2.0 10,932 + IAI47_18885 0.28 -0.3 10,986 - IAI47_18885 0.33 +0.1 11,060 + IAI47_18885 0.41 -1.6 11,060 + IAI47_18885 0.41 -0.2 11,060 + IAI47_18885 0.41 -1.3 11,061 - IAI47_18885 0.41 -0.6 11,061 - IAI47_18885 0.41 +1.0 11,061 - IAI47_18885 0.41 +0.3 11,061 - IAI47_18885 0.41 -1.2 11,061 - IAI47_18885 0.41 -1.8 11,101 + IAI47_18885 0.45 -0.8 11,101 + IAI47_18885 0.45 -0.8 11,135 + IAI47_18885 0.49 -0.4 11,135 + IAI47_18885 0.49 +0.0 11,135 + IAI47_18885 0.49 -1.1 11,135 + IAI47_18885 0.49 +0.1 11,135 + IAI47_18885 0.49 -0.9 11,135 + IAI47_18885 0.49 +1.0 11,135 + IAI47_18885 0.49 +0.4 11,135 + IAI47_18885 0.49 -1.2 11,135 + IAI47_18885 0.49 +0.4 11,135 + IAI47_18885 0.49 +0.2 11,136 - IAI47_18885 0.49 -1.2 11,136 - IAI47_18885 0.49 +0.6 11,136 - IAI47_18885 0.49 +0.3 11,136 - IAI47_18885 0.49 -0.4 11,139 + IAI47_18885 0.49 -1.2 11,139 + IAI47_18885 0.49 -0.0 11,139 + IAI47_18885 0.49 -0.2 11,139 + IAI47_18885 0.49 +0.4 11,139 + IAI47_18885 0.49 +0.4 11,139 + IAI47_18885 0.49 -1.8 11,140 - IAI47_18885 0.49 -1.5 11,140 - IAI47_18885 0.49 -1.4 11,140 - IAI47_18885 0.49 -0.6 11,140 - IAI47_18885 0.49 -0.7 11,185 + IAI47_18885 0.54 -0.8 11,185 + IAI47_18885 0.54 +0.8 11,197 + IAI47_18885 0.55 -1.0 11,226 + IAI47_18885 0.58 -1.2 11,226 + IAI47_18885 0.58 -1.8 11,227 - IAI47_18885 0.58 -1.2 11,352 + IAI47_18885 0.71 -0.5 11,353 - IAI47_18885 0.72 +0.8 11,393 + IAI47_18885 0.76 -0.0 11,393 + IAI47_18885 0.76 -0.5 11,394 - IAI47_18885 0.76 -1.8 11,398 + IAI47_18885 0.76 +1.8 11,398 + IAI47_18885 0.76 -1.5 11,398 + IAI47_18885 0.76 -1.2 11,399 - IAI47_18885 0.76 +2.8 11,399 - IAI47_18885 0.76 -0.1 11,494 + IAI47_18885 0.86 +0.8 11,497 + IAI47_18885 0.87 -2.0 11,498 - IAI47_18885 0.87 -2.0 11,530 - -0.3 11,550 - -0.9 11,582 + +0.1 11,582 + -0.8 11,582 + +0.8 11,583 - -0.1 11,583 - -2.7 11,583 - -1.2 11,583 - -1.2 11,583 - -0.8 11,583 - +1.7 11,585 - +1.4 11,670 + +0.0 11,671 - -0.5 11,699 + -0.1 11,773 - +1.0 11,773 - -1.0 11,773 - -0.8 11,781 - +0.5 11,797 + +0.3 11,797 + -0.8 11,797 + +0.2 11,798 - -1.2 11,798 - -1.0 11,798 - +0.8 11,802 + +0.0 11,802 + +0.1 11,803 - -1.1 11,803 - -0.0 11,803 - -2.4 11,858 + -0.8 11,859 - -0.8 11,928 + -1.6 11,928 + +0.4 11,928 + -1.2 11,929 - +0.6 11,955 - +1.9 11,955 - +0.3 12,066 + IAI47_18890 0.11 +0.4 12,189 - IAI47_18890 0.13 -0.5 12,230 + IAI47_18890 0.14 -0.2 12,231 - IAI47_18890 0.14 +1.0 12,231 - IAI47_18890 0.14 +1.8 12,231 - IAI47_18890 0.14 +2.4 12,231 - IAI47_18890 0.14 +0.6 12,231 - IAI47_18890 0.14 +1.2 12,270 + IAI47_18890 0.15 -0.2 12,271 - IAI47_18890 0.15 +1.0 12,340 - IAI47_18890 0.17 +0.6 12,340 - IAI47_18890 0.17 +0.3 12,349 - IAI47_18890 0.17 -1.4 12,376 + IAI47_18890 0.18 -2.4 12,376 + IAI47_18890 0.18 -0.5 12,376 + IAI47_18890 0.18 +1.0 12,377 - IAI47_18890 0.18 -0.2 12,486 + IAI47_18890 0.20 +0.7 12,498 - IAI47_18890 0.20 +0.1 12,510 + IAI47_18890 0.21 -0.8 12,511 - IAI47_18890 0.21 -0.8 12,518 + IAI47_18890 0.21 +1.3 12,518 + IAI47_18890 0.21 +0.2 12,519 - IAI47_18890 0.21 +2.4 12,611 + IAI47_18890 0.23 -0.2 12,612 - IAI47_18890 0.23 +0.8 12,612 - IAI47_18890 0.23 +0.4 12,612 - IAI47_18890 0.23 +2.2 12,612 - IAI47_18890 0.23 -0.6
Or see this region's nucleotide sequence