Strain Fitness in Pantoea sp. MT58 around IAI47_13375

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
2,832,101	+		IAI47_13370	0.64	-0.5
2,832,102	-		IAI47_13370	0.64	+0.6
2,832,102	-		IAI47_13370	0.64	+1.0
2,832,212	-		IAI47_13370	0.69	+0.4
2,832,223	+		IAI47_13370	0.69	-1.1
2,832,223	+		IAI47_13370	0.69	+1.4
2,832,223	+		IAI47_13370	0.69	-0.8
2,832,224	-		IAI47_13370	0.69	-0.9
2,832,236	+		IAI47_13370	0.70	-0.7
2,832,236	+		IAI47_13370	0.70	+0.3
2,832,236	+		IAI47_13370	0.70	+0.5
2,832,236	+		IAI47_13370	0.70	-1.5
2,832,236	+		IAI47_13370	0.70	+0.3
2,832,236	+		IAI47_13370	0.70	+0.1
2,832,236	+		IAI47_13370	0.70	-0.4
2,832,236	+		IAI47_13370	0.70	+1.0
2,832,237	-		IAI47_13370	0.70	+0.3
2,832,237	-		IAI47_13370	0.70	-1.8
2,832,237	-		IAI47_13370	0.70	-1.0
2,832,237	-		IAI47_13370	0.70	+0.2
2,832,237	-		IAI47_13370	0.70	+0.5
2,832,265	+		IAI47_13370	0.71	-0.6
2,832,265	+		IAI47_13370	0.71	+1.0
2,832,265	+		IAI47_13370	0.71	-0.1
2,832,266	-		IAI47_13370	0.71	-0.7
2,832,266	-		IAI47_13370	0.71	-0.4
2,832,266	-		IAI47_13370	0.71	+0.8
2,832,266	-		IAI47_13370	0.71	+1.0
2,832,292	+		IAI47_13370	0.72	+0.6
2,832,292	+		IAI47_13370	0.72	+0.2
2,832,293	-		IAI47_13370	0.72	+0.0
2,832,321	+		IAI47_13370	0.73	-0.4
2,832,394	+		IAI47_13370	0.77	+0.2
2,832,394	+		IAI47_13370	0.77	-0.4
2,832,394	+		IAI47_13370	0.77	-0.6
2,832,394	+		IAI47_13370	0.77	-0.1
2,832,394	+		IAI47_13370	0.77	+0.8
2,832,394	+		IAI47_13370	0.77	-0.8
2,832,394	+		IAI47_13370	0.77	-2.3
2,832,394	+		IAI47_13370	0.77	+0.1
2,832,394	+		IAI47_13370	0.77	+0.2
2,832,394	+		IAI47_13370	0.77	-0.7
2,832,394	+		IAI47_13370	0.77	-0.6
2,832,394	+		IAI47_13370	0.77	+1.1
2,832,395	-		IAI47_13370	0.77	+0.8
2,832,395	-		IAI47_13370	0.77	+1.3
2,832,395	-		IAI47_13370	0.77	+0.0
2,832,395	-		IAI47_13370	0.77	-0.2
2,832,395	-		IAI47_13370	0.77	+0.8
2,832,395	-		IAI47_13370	0.77	-0.2
2,832,395	-		IAI47_13370	0.77	-0.4
2,832,398	+		IAI47_13370	0.77	-3.1
2,832,398	+		IAI47_13370	0.77	-2.5
2,832,398	+		IAI47_13370	0.77	-0.4
2,832,399	-		IAI47_13370	0.77	+1.0
2,832,399	-		IAI47_13370	0.77	-0.4
2,832,399	-		IAI47_13370	0.77	-3.0
2,832,399	-		IAI47_13370	0.77	+0.2
2,832,473	+		IAI47_13370	0.80	+0.8
2,832,473	+		IAI47_13370	0.80	+0.6
2,832,473	+		IAI47_13370	0.80	+1.4
2,832,473	+		IAI47_13370	0.80	+1.0
2,832,473	+		IAI47_13370	0.80	+0.0
2,832,474	-		IAI47_13370	0.80	+0.5
2,832,474	-		IAI47_13370	0.80	-2.9
2,832,474	-		IAI47_13370	0.80	+2.4
2,832,474	-		IAI47_13370	0.80	-0.8
2,832,499	+		IAI47_13370	0.81	+0.3
2,832,566	+		IAI47_13370	0.84	-0.4
2,832,684	-		IAI47_13370	0.89	+0.3
2,832,684	-		IAI47_13370	0.89	+1.2
2,832,686	+		IAI47_13370	0.89	+1.6
2,832,687	-		IAI47_13370	0.89	+1.0
2,832,687	-		IAI47_13370	0.89	+2.1
2,832,687	-		IAI47_13370	0.89	-0.2
2,832,687	-		IAI47_13370	0.89	-0.2
2,832,743	+				+1.0
2,832,762	+				-0.8
2,832,855	-				-1.9
2,832,874	-				-0.4
2,832,874	-				+0.8
2,832,909	-				+2.6
2,832,945	+				+1.1
2,832,945	+				+0.2
2,832,945	+				+0.3
2,832,946	-				-0.6
2,832,946	-				-1.2
2,832,946	-				-1.6
2,832,946	-				+0.4
2,832,946	-				+0.0
2,832,946	-				+0.8
2,832,946	-				+0.7
2,832,949	+				+0.1
2,832,950	-				+0.7
2,832,960	+				+0.6
2,832,960	+				-0.3
2,832,961	-				-0.6
2,832,961	-				-0.2
2,832,968	+				+0.7
2,832,999	+				+0.8
2,832,999	+				+2.4
2,832,999	+				-3.0
2,832,999	+				-1.3
2,832,999	+				+0.8
2,833,006	+				-1.2
2,833,007	-				+0.6
2,833,047	+				+0.7
2,833,047	+				+0.4
2,833,047	+				+0.3
2,833,048	-				-0.5
2,833,054	-				+1.8
2,833,066	+				+1.8
2,833,066	+				+0.2
2,833,067	-				+0.8
2,833,067	-				+0.1
2,833,067	-				+0.1
2,833,067	-				-0.6
2,833,117	-				+0.9
2,833,117	-				-1.4
2,833,304	-		IAI47_13375	0.13	-0.0
2,833,343	+		IAI47_13375	0.15	-1.3
2,833,370	-		IAI47_13375	0.17	-0.6
2,833,436	-		IAI47_13375	0.21	-1.0
2,833,436	-		IAI47_13375	0.21	-2.5
2,833,436	-		IAI47_13375	0.21	-0.8
2,833,436	-		IAI47_13375	0.21	-0.4
2,833,442	+		IAI47_13375	0.21	+0.8
2,833,443	-		IAI47_13375	0.21	-0.3
2,833,443	-		IAI47_13375	0.21	+0.8
2,833,443	-		IAI47_13375	0.21	+0.6
2,833,507	+		IAI47_13375	0.25	-1.5
2,833,507	+		IAI47_13375	0.25	+0.2
2,833,508	-		IAI47_13375	0.25	+0.8
2,833,508	-		IAI47_13375	0.25	-1.3
2,833,508	-		IAI47_13375	0.25	-0.0
2,833,540	+		IAI47_13375	0.27	-1.2
2,833,540	+		IAI47_13375	0.27	-0.4
2,833,540	+		IAI47_13375	0.27	+0.2
2,833,540	+		IAI47_13375	0.27	+0.1
2,833,541	-		IAI47_13375	0.27	-1.9
2,833,561	+		IAI47_13375	0.28	+0.2
2,833,561	+		IAI47_13375	0.28	-1.0
2,833,561	+		IAI47_13375	0.28	+0.2
2,833,562	-		IAI47_13375	0.28	+0.3
2,833,578	-		IAI47_13375	0.29	-0.8
2,833,709	-		IAI47_13375	0.37	+0.5
2,833,709	-		IAI47_13375	0.37	-1.8
2,833,709	-		IAI47_13375	0.37	-0.6
2,833,751	+		IAI47_13375	0.39	-0.6
2,833,751	+		IAI47_13375	0.39	-0.1
2,833,751	+		IAI47_13375	0.39	+0.0
2,833,751	+		IAI47_13375	0.39	-1.2
2,833,751	+		IAI47_13375	0.39	-0.8
2,833,752	-		IAI47_13375	0.39	+0.2
2,833,752	-		IAI47_13375	0.39	-2.0
2,833,796	+		IAI47_13375	0.42	-2.8
2,833,796	+		IAI47_13375	0.42	-0.4
2,833,796	+		IAI47_13375	0.42	-1.7
2,833,796	+		IAI47_13375	0.42	+0.2
2,833,796	+		IAI47_13375	0.42	-1.2
2,833,797	-		IAI47_13375	0.42	-1.8
2,833,797	-		IAI47_13375	0.42	-2.6
2,833,873	+		IAI47_13375	0.46	+0.3
2,833,874	-		IAI47_13375	0.46	+0.4
2,833,874	-		IAI47_13375	0.46	-0.8
2,833,874	-		IAI47_13375	0.46	-1.8
2,833,907	+		IAI47_13375	0.48	-0.2
2,833,942	+		IAI47_13375	0.50	-0.2
2,833,970	-		IAI47_13375	0.52	-2.8
2,833,994	+		IAI47_13375	0.53	-0.8
2,833,994	+		IAI47_13375	0.53	+0.5
2,833,994	+		IAI47_13375	0.53	+1.1
2,833,995	-		IAI47_13375	0.53	-0.9
2,833,995	-		IAI47_13375	0.53	-0.2
2,833,995	-		IAI47_13375	0.53	-2.0
2,833,995	-		IAI47_13375	0.53	-0.5
2,833,995	-		IAI47_13375	0.53	+0.1
2,833,995	-		IAI47_13375	0.53	-1.3
2,833,995	-		IAI47_13375	0.53	-0.1
2,833,996	+		IAI47_13375	0.53	-0.2
2,833,996	+		IAI47_13375	0.53	+0.0
2,833,996	+		IAI47_13375	0.53	+0.1
2,833,996	+		IAI47_13375	0.53	+0.4
2,833,996	+		IAI47_13375	0.53	-0.2
2,833,996	+		IAI47_13375	0.53	-1.2
2,833,996	+		IAI47_13375	0.53	-1.5
2,833,996	+		IAI47_13375	0.53	+0.6
2,833,996	+		IAI47_13375	0.53	-1.5
2,833,996	+		IAI47_13375	0.53	-2.4
2,833,996	+		IAI47_13375	0.53	-0.2
2,833,996	+		IAI47_13375	0.53	+0.3
2,833,997	-		IAI47_13375	0.54	-0.8
2,833,997	-		IAI47_13375	0.54	-0.1
2,833,997	-		IAI47_13375	0.54	+0.6
2,833,997	-		IAI47_13375	0.54	-0.7
2,833,997	-		IAI47_13375	0.54	-2.6
2,833,997	-		IAI47_13375	0.54	-1.2
2,833,997	-		IAI47_13375	0.54	-2.6
2,833,997	-		IAI47_13375	0.54	+1.4
2,833,997	-		IAI47_13375	0.54	+0.5
2,834,012	+		IAI47_13375	0.54	-0.5
2,834,012	+		IAI47_13375	0.54	-2.3
2,834,012	+		IAI47_13375	0.54	-0.6
2,834,012	+		IAI47_13375	0.54	+0.1
2,834,012	+		IAI47_13375	0.54	+1.3
2,834,012	+		IAI47_13375	0.54	+0.8
2,834,012	+		IAI47_13375	0.54	+1.2
2,834,013	-		IAI47_13375	0.54	-1.2
2,834,013	-		IAI47_13375	0.54	-0.3
2,834,013	-		IAI47_13375	0.54	+0.5
2,834,013	-		IAI47_13375	0.54	-2.0
2,834,013	-		IAI47_13375	0.54	-0.2
2,834,013	-		IAI47_13375	0.54	+0.4
2,834,030	+		IAI47_13375	0.55	-0.5
2,834,030	+		IAI47_13375	0.55	-0.8
2,834,075	-		IAI47_13375	0.58	-1.5
2,834,141	-		IAI47_13375	0.62	-0.8
2,834,179	+		IAI47_13375	0.64	-0.0
2,834,179	+		IAI47_13375	0.64	-1.3
2,834,179	+		IAI47_13375	0.64	-0.6
2,834,180	-		IAI47_13375	0.64	-0.7
2,834,231	+		IAI47_13375	0.67	+0.2
2,834,231	+		IAI47_13375	0.67	-0.5
2,834,231	+		IAI47_13375	0.67	-2.5
2,834,231	+		IAI47_13375	0.67	-0.5
2,834,231	+		IAI47_13375	0.67	-0.8
2,834,231	+		IAI47_13375	0.67	-1.8
2,834,232	-		IAI47_13375	0.67	-1.2
2,834,232	-		IAI47_13375	0.67	+0.8
2,834,232	-		IAI47_13375	0.67	+2.1
2,834,232	-		IAI47_13375	0.67	+1.8
2,834,301	-		IAI47_13375	0.71	-2.5
2,834,432	-		IAI47_13375	0.79	-2.3
2,834,432	-		IAI47_13375	0.79	-0.7
2,834,511	+		IAI47_13375	0.84	-1.2
2,834,512	-		IAI47_13375	0.84	+1.1
2,834,525	+		IAI47_13375	0.85	-2.1
2,834,525	+		IAI47_13375	0.85	-0.8
2,834,526	-		IAI47_13375	0.85	-2.5
2,834,526	-		IAI47_13375	0.85	+0.7
2,834,528	+		IAI47_13375	0.85	-0.5
2,834,528	+		IAI47_13375	0.85	-0.1
2,834,528	+		IAI47_13375	0.85	-2.4
2,834,528	+		IAI47_13375	0.85	-1.5
2,834,528	+		IAI47_13375	0.85	-2.1
2,834,528	+		IAI47_13375	0.85	-2.8
2,834,528	+		IAI47_13375	0.85	-0.6
2,834,528	+		IAI47_13375	0.85	-1.8
2,834,529	-		IAI47_13375	0.85	-1.2
2,834,529	-		IAI47_13375	0.85	-0.2
2,834,529	-		IAI47_13375	0.85	+0.1
2,834,529	-		IAI47_13375	0.85	-1.5
2,834,529	-		IAI47_13375	0.85	-0.4
2,834,529	-		IAI47_13375	0.85	+0.2
2,834,529	-		IAI47_13375	0.85	+0.8
2,834,529	-		IAI47_13375	0.85	-0.0
2,834,529	-		IAI47_13375	0.85	+0.0
2,834,529	-		IAI47_13375	0.85	-1.4
2,834,552	+		IAI47_13375	0.86	+0.0
2,834,564	+		IAI47_13375	0.87	-1.5
2,834,564	+		IAI47_13375	0.87	-1.2
2,834,564	+		IAI47_13375	0.87	-0.3
2,834,564	+		IAI47_13375	0.87	-2.6
2,834,564	+		IAI47_13375	0.87	-0.4
2,834,564	+		IAI47_13375	0.87	-1.3
2,834,564	+		IAI47_13375	0.87	-1.8
2,834,565	-		IAI47_13375	0.87	-0.8
2,834,565	-		IAI47_13375	0.87	-0.5
2,834,565	-		IAI47_13375	0.87	+2.2
2,834,565	-		IAI47_13375	0.87	+1.1
2,834,642	+				-0.2
2,834,656	+				-1.2
2,834,656	+				-1.2
2,834,656	+				+0.2
2,834,656	+				-1.8
2,834,656	+				+1.0
2,834,656	+				+0.6
2,834,657	-				-1.3
2,834,657	-				-1.2
2,834,672	+				-0.8
2,834,672	+				-0.6
2,834,672	+				-1.8
2,834,673	-				+0.5
2,834,673	-				-1.5
2,834,673	-				-0.8
2,834,702	+				+0.7
2,834,702	+				-0.2
2,834,703	-				+0.8
2,834,722	+				+1.4
2,834,723	-				+1.6
2,834,786	+				+1.0
2,834,786	+				-0.4
2,834,786	+				-0.2
2,834,797	+				+0.3
2,834,797	+				+1.3
2,834,797	+				-1.9
2,834,797	+				+1.2
2,834,797	+				+0.5
2,834,797	+				+0.4
2,834,798	-				+0.0
2,834,873	+				+2.2
2,834,882	-				-1.3
2,834,898	-				+1.8
2,834,898	-				+1.2
2,834,909	-				-0.0
2,834,960	+				+1.6
2,835,011	+				-0.4
2,835,012	-				+0.4
2,835,017	-				-1.0
2,835,017	-				-1.0
2,835,128	+				+0.4
2,835,171	+				-1.7
2,835,174	+				+0.1
2,835,233	+				-0.6
2,835,233	+				-1.2
2,835,234	-				-0.4
2,835,341	+		IAI47_13380	0.14	+1.9
2,835,341	+		IAI47_13380	0.14	+0.3
2,835,342	-		IAI47_13380	0.14	-0.0
2,835,354	+		IAI47_13380	0.15	-0.0
2,835,354	+		IAI47_13380	0.15	+1.1
2,835,361	+		IAI47_13380	0.15	-0.3
2,835,361	+		IAI47_13380	0.15	-1.3
2,835,362	-		IAI47_13380	0.15	+1.7
2,835,362	-		IAI47_13380	0.15	-0.3
2,835,362	-		IAI47_13380	0.15	-0.9
2,835,362	-		IAI47_13380	0.15	-1.2
2,835,377	-		IAI47_13380	0.16	-1.2
2,835,377	-		IAI47_13380	0.16	-1.9
2,835,386	+		IAI47_13380	0.17	+1.4
2,835,387	-		IAI47_13380	0.17	+0.5
2,835,387	-		IAI47_13380	0.17	-0.2
2,835,387	-		IAI47_13380	0.17	-0.7
2,835,494	-		IAI47_13380	0.25	-0.4
2,835,551	+		IAI47_13380	0.29	-0.9
2,835,553	+		IAI47_13380	0.29	+0.1
2,835,553	+		IAI47_13380	0.29	+0.4
2,835,554	-		IAI47_13380	0.29	-0.2
2,835,690	-		IAI47_13380	0.39	+1.1
2,835,744	-		IAI47_13380	0.43	+1.8