Strain Fitness in Pantoea sp. MT58 around IAI47_11200

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
2,366,360	-				+1.4
2,366,375	+				+0.6
2,366,376	-				-0.5
2,366,376	-				-0.8
2,366,378	+				+0.5
2,366,379	-				+0.6
2,366,379	-				+1.9
2,366,379	-				-1.0
2,366,379	-				+0.6
2,366,379	-				-0.1
2,366,379	-				+1.8
2,366,421	+				-2.1
2,366,451	-				-0.2
2,366,518	-				+3.1
2,366,521	+				-0.1
2,366,521	+				+1.5
2,366,521	+				-0.2
2,366,521	+				-1.6
2,366,522	-				-0.8
2,366,522	-				+0.2
2,366,526	+				-0.2
2,366,527	-				-1.0
2,366,563	+				+0.0
2,366,564	-				+1.8
2,366,564	-				+0.0
2,366,564	-				-0.2
2,366,575	+				+1.5
2,366,622	+				-0.5
2,366,622	+				-0.8
2,366,623	-				+1.5
2,366,626	+				-0.2
2,366,631	+				+0.4
2,366,631	+				+0.8
2,366,632	-				-1.6
2,366,632	-				-1.0
2,366,742	+				-0.0
2,366,743	-				+1.1
2,366,807	+				+0.3
2,366,822	+		IAI47_11195	0.11	+0.3
2,366,852	+		IAI47_11195	0.17	-1.8
2,366,852	+		IAI47_11195	0.17	-1.6
2,366,873	+		IAI47_11195	0.22	-0.4
2,366,873	+		IAI47_11195	0.22	-0.2
2,366,955	+		IAI47_11195	0.38	+0.3
2,366,955	+		IAI47_11195	0.38	-0.3
2,366,955	+		IAI47_11195	0.38	+1.4
2,366,955	+		IAI47_11195	0.38	-1.2
2,366,956	-		IAI47_11195	0.39	+0.2
2,367,006	+		IAI47_11195	0.49	-1.0
2,367,006	+		IAI47_11195	0.49	+0.6
2,367,006	+		IAI47_11195	0.49	-1.1
2,367,034	+		IAI47_11195	0.54	-0.2
2,367,035	-		IAI47_11195	0.55	+0.3
2,367,099	+		IAI47_11195	0.68	-0.5
2,367,099	+		IAI47_11195	0.68	+0.2
2,367,100	-		IAI47_11195	0.68	+0.1
2,367,109	+		IAI47_11195	0.70	-0.8
2,367,135	+		IAI47_11195	0.75	-0.8
2,367,136	-		IAI47_11195	0.75	+1.1
2,367,275	+				-0.6
2,367,275	+				+1.4
2,367,275	+				-0.8
2,367,341	+				+0.4
2,367,341	+				+0.0
2,367,341	+				-0.7
2,367,341	+				-1.8
2,367,341	+				-1.0
2,367,341	+				-1.8
2,367,342	-				+1.8
2,367,342	-				-2.7
2,367,398	+				+1.2
2,367,420	-				+2.0
2,367,431	+				+0.5
2,367,522	+		IAI47_11200	0.15	-1.8
2,367,695	+		IAI47_11200	0.29	-1.2
2,367,695	+		IAI47_11200	0.29	-2.2
2,367,695	+		IAI47_11200	0.29	+0.2
2,367,764	+		IAI47_11200	0.35	+1.4
2,367,764	+		IAI47_11200	0.35	+1.1
2,367,893	+		IAI47_11200	0.45	-0.6
2,367,894	-		IAI47_11200	0.45	-2.3
2,368,042	+		IAI47_11200	0.57	-0.2
2,368,042	+		IAI47_11200	0.57	+0.0
2,368,042	+		IAI47_11200	0.57	-0.2
2,368,042	+		IAI47_11200	0.57	+0.2
2,368,042	+		IAI47_11200	0.57	-0.6
2,368,043	-		IAI47_11200	0.57	-0.8
2,368,218	+		IAI47_11200	0.72	-1.8
2,368,219	-		IAI47_11200	0.72	+1.1
2,368,330	-		IAI47_11200	0.81	-1.2
2,368,330	-		IAI47_11200	0.81	-1.2
2,368,464	+				-0.6
2,368,465	-				-0.9
2,368,509	+				-1.2
2,368,540	-				+1.4
2,368,540	-				-0.2
2,368,558	+				-1.8
2,368,558	+				-0.8
2,368,558	+				-0.8
2,368,559	-				-0.8
2,368,559	-				+2.4
2,368,610	+				-1.2
2,368,611	-				-0.8
2,368,714	+				+0.2
2,368,789	+		IAI47_11205	0.11	+0.6
2,368,845	+		IAI47_11205	0.13	-2.0
2,368,927	+		IAI47_11205	0.17	+0.2
2,368,928	-		IAI47_11205	0.17	-0.2
2,368,950	+		IAI47_11205	0.18	-2.0
2,368,951	-		IAI47_11205	0.18	-2.6
2,368,951	-		IAI47_11205	0.18	-0.2
2,368,951	-		IAI47_11205	0.18	-1.2
2,368,971	+		IAI47_11205	0.19	-0.2
2,368,971	+		IAI47_11205	0.19	-1.0
2,368,972	-		IAI47_11205	0.19	-1.6
2,368,972	-		IAI47_11205	0.19	+0.8
2,369,145	+		IAI47_11205	0.28	+1.8
2,369,145	+		IAI47_11205	0.28	+0.2
2,369,145	+		IAI47_11205	0.28	-1.0
2,369,199	-		IAI47_11205	0.30	-0.8
2,369,199	-		IAI47_11205	0.30	-0.6
2,369,370	+		IAI47_11205	0.38	-0.4
2,369,384	+		IAI47_11205	0.39	-1.2
2,369,384	+		IAI47_11205	0.39	+0.4
2,369,408	+		IAI47_11205	0.40	+2.2
2,369,408	+		IAI47_11205	0.40	-1.1
2,369,409	-		IAI47_11205	0.40	+0.0
2,369,415	+		IAI47_11205	0.40	+0.1
2,369,415	+		IAI47_11205	0.40	-0.6
2,369,415	+		IAI47_11205	0.40	+0.2
2,369,416	-		IAI47_11205	0.40	+1.3
2,369,426	+		IAI47_11205	0.41	+2.2
2,369,426	+		IAI47_11205	0.41	-0.8
2,369,427	-		IAI47_11205	0.41	+2.8
2,369,433	-		IAI47_11205	0.41	+1.4
2,369,451	-		IAI47_11205	0.42	-0.8
2,369,469	-		IAI47_11205	0.43	+1.0