Strain Fitness in Pantoea sp. MT58 around IAI47_10190

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
2,152,233	+		IAI47_10180	0.51	+0.6
2,152,233	+		IAI47_10180	0.51	+0.6
2,152,233	+		IAI47_10180	0.51	-2.7
2,152,233	+		IAI47_10180	0.51	-0.6
2,152,233	+		IAI47_10180	0.51	-0.5
2,152,233	+		IAI47_10180	0.51	+0.8
2,152,234	-		IAI47_10180	0.51	-0.9
2,152,234	-		IAI47_10180	0.51	+0.8
2,152,234	-		IAI47_10180	0.51	+1.8
2,152,234	-		IAI47_10180	0.51	+0.4
2,152,234	-		IAI47_10180	0.51	+0.2
2,152,234	-		IAI47_10180	0.51	-0.0
2,152,234	-		IAI47_10180	0.51	+0.1
2,152,234	-		IAI47_10180	0.51	+0.4
2,152,234	-		IAI47_10180	0.51	+0.8
2,152,234	-		IAI47_10180	0.51	-0.2
2,152,234	-		IAI47_10180	0.51	-2.2
2,152,237	+		IAI47_10180	0.51	+0.2
2,152,237	+		IAI47_10180	0.51	-0.8
2,152,238	-		IAI47_10180	0.51	+0.8
2,152,238	-		IAI47_10180	0.51	+2.3
2,152,252	+		IAI47_10180	0.52	-0.6
2,152,252	+		IAI47_10180	0.52	-1.6
2,152,252	+		IAI47_10180	0.52	-1.4
2,152,252	+		IAI47_10180	0.52	+0.3
2,152,333	-		IAI47_10180	0.58	-0.2
2,152,381	+		IAI47_10180	0.62	-0.2
2,152,381	+		IAI47_10180	0.62	-0.2
2,152,426	+		IAI47_10180	0.65	+1.3
2,152,426	+		IAI47_10180	0.65	-0.2
2,152,426	+		IAI47_10180	0.65	-0.4
2,152,426	+		IAI47_10180	0.65	-0.4
2,152,427	-		IAI47_10180	0.65	+0.6
2,152,517	+		IAI47_10180	0.72	-0.7
2,152,517	+		IAI47_10180	0.72	-0.1
2,152,518	-		IAI47_10180	0.72	+1.1
2,152,545	+		IAI47_10180	0.74	-1.1
2,152,545	+		IAI47_10180	0.74	-0.9
2,152,545	+				-0.8
2,152,545	+		IAI47_10180	0.74	+0.0
2,152,545	+		IAI47_10180	0.74	-1.0
2,152,545	+		IAI47_10180	0.74	+0.4
2,152,546	-		IAI47_10180	0.74	+0.2
2,152,546	-		IAI47_10180	0.74	-0.1
2,152,546	-		IAI47_10180	0.74	+1.8
2,152,546	-		IAI47_10180	0.74	-2.6
2,152,546	-		IAI47_10180	0.74	+0.8
2,152,546	-		IAI47_10180	0.74	-2.6
2,152,546	-		IAI47_10180	0.74	+1.6
2,152,549	+		IAI47_10180	0.74	+0.5
2,152,549	+		IAI47_10180	0.74	+1.4
2,152,549	+		IAI47_10180	0.74	-0.7
2,152,549	+		IAI47_10180	0.74	+0.3
2,152,549	+		IAI47_10180	0.74	-0.8
2,152,549	+		IAI47_10180	0.74	-1.2
2,152,550	-		IAI47_10180	0.74	+0.8
2,152,550	-		IAI47_10180	0.74	-1.1
2,152,550	-		IAI47_10180	0.74	-0.9
2,152,550	-		IAI47_10180	0.74	+0.5
2,152,576	+		IAI47_10180	0.76	+0.6
2,152,577	-		IAI47_10180	0.76	+0.1
2,152,649	-		IAI47_10180	0.81	-1.0
2,152,656	-		IAI47_10180	0.82	-0.6
2,152,656	-		IAI47_10180	0.82	-0.7
2,152,656	-		IAI47_10180	0.82	-2.2
2,152,656	-		IAI47_10180	0.82	-1.7
2,152,666	+		IAI47_10180	0.83	+0.2
2,152,667	-		IAI47_10180	0.83	-1.2
2,152,667	-		IAI47_10180	0.83	-1.3
2,152,668	+		IAI47_10180	0.83	+0.8
2,152,678	+		IAI47_10180	0.83	-2.7
2,152,703	-		IAI47_10180	0.85	+1.2
2,152,729	+		IAI47_10180	0.87	-0.6
2,152,729	+		IAI47_10180	0.87	+0.4
2,152,729	+		IAI47_10180	0.87	+0.4
2,152,729	+		IAI47_10180	0.87	-1.2
2,152,729	+		IAI47_10180	0.87	+0.1
2,152,730	-		IAI47_10180	0.87	+0.2
2,152,730	-		IAI47_10180	0.87	+0.1
2,152,730	-		IAI47_10180	0.87	-0.2
2,152,730	-		IAI47_10180	0.87	+0.4
2,152,730	-		IAI47_10180	0.87	+0.8
2,152,732	+		IAI47_10180	0.87	+1.1
2,152,732	+		IAI47_10180	0.87	-2.0
2,152,732	+		IAI47_10180	0.87	+0.8
2,152,732	+		IAI47_10180	0.87	+0.6
2,152,751	-		IAI47_10180	0.89	-0.5
2,152,751	-		IAI47_10180	0.89	+0.4
2,152,754	+		IAI47_10180	0.89	-0.7
2,152,775	-				+0.3
2,152,837	+				-1.6
2,152,897	+				-1.1
2,152,982	+		IAI47_10185	0.27	+0.4
2,152,988	+		IAI47_10185	0.29	+0.3
2,152,989	-		IAI47_10185	0.30	+0.5
2,153,000	+		IAI47_10185	0.33	+0.8
2,153,001	-		IAI47_10185	0.33	-0.8
2,153,001	-		IAI47_10185	0.33	+0.5
2,153,029	-		IAI47_10185	0.42	+2.1
2,153,029	-		IAI47_10185	0.42	-0.0
2,153,029	-		IAI47_10185	0.42	+1.8
2,153,063	+		IAI47_10185	0.53	-0.4
2,153,063	+		IAI47_10185	0.53	+1.8
2,153,064	-		IAI47_10185	0.53	-1.8
2,153,073	-		IAI47_10185	0.56	+0.5
2,153,073	-		IAI47_10185	0.56	-2.1
2,153,133	+		IAI47_10185	0.75	+1.1
2,153,133	+		IAI47_10185	0.75	-0.9
2,153,137	-		IAI47_10185	0.77	+0.4
2,153,196	+				-1.0
2,153,196	+				+0.3
2,153,226	+				+0.9
2,153,226	+				+1.3
2,153,226	+				+0.8
2,153,227	-				-0.2
2,153,227	-				+0.8
2,153,227	-				-1.9
2,153,227	-				-0.5
2,153,228	+				-0.5
2,153,228	+				+1.1
2,153,229	-				+0.8
2,153,251	+				+0.2
2,153,293	-				-0.2
2,153,293	-				+1.1
2,153,293	-				-0.2
2,153,315	+				-0.8
2,153,331	-		IAI47_10190	0.11	-2.1
2,153,342	+		IAI47_10190	0.12	-0.1
2,153,363	+		IAI47_10190	0.15	-1.6
2,153,364	-		IAI47_10190	0.15	+0.1
2,153,450	+		IAI47_10190	0.23	+1.6
2,153,457	-		IAI47_10190	0.24	-0.5
2,153,457	-		IAI47_10190	0.24	-1.0
2,153,457	-		IAI47_10190	0.24	+0.1
2,153,531	-		IAI47_10190	0.32	+1.4
2,153,531	-		IAI47_10190	0.32	-0.8
2,153,542	+		IAI47_10190	0.33	+1.8
2,153,542	+		IAI47_10190	0.33	-0.9
2,153,543	-		IAI47_10190	0.33	-1.0
2,153,664	-		IAI47_10190	0.45	+0.4
2,153,682	+		IAI47_10190	0.47	+0.3
2,153,706	+		IAI47_10190	0.50	+0.8
2,153,706	+		IAI47_10190	0.50	-1.6
2,153,750	+		IAI47_10190	0.54	-0.6
2,153,751	-		IAI47_10190	0.54	+0.8
2,153,773	-		IAI47_10190	0.56	-0.2
2,153,810	-		IAI47_10190	0.60	+1.3
2,153,844	-		IAI47_10190	0.64	-0.6
2,153,923	-		IAI47_10190	0.72	+0.8
2,153,923	-		IAI47_10190	0.72	-0.5
2,153,923	-		IAI47_10190	0.72	-1.2
2,153,925	+		IAI47_10190	0.72	+0.4
2,153,925	+		IAI47_10190	0.72	-0.9
2,153,925	+		IAI47_10190	0.72	-0.9
2,153,925	+		IAI47_10190	0.72	-2.5
2,153,926	-		IAI47_10190	0.72	-2.1
2,153,926	-		IAI47_10190	0.72	-1.1
2,153,926	-		IAI47_10190	0.72	+0.8
2,153,933	+		IAI47_10190	0.73	-1.1
2,153,933	+		IAI47_10190	0.73	-1.2
2,153,933	+		IAI47_10190	0.73	-0.4
2,153,934	-		IAI47_10190	0.73	+0.4
2,153,934	-		IAI47_10190	0.73	-0.7
2,153,934	-		IAI47_10190	0.73	-0.2
2,153,961	+		IAI47_10190	0.76	-1.2
2,153,961	+		IAI47_10190	0.76	-1.0
2,153,962	-		IAI47_10190	0.76	-0.2
2,153,969	-		IAI47_10190	0.76	+3.3
2,153,969	-		IAI47_10190	0.76	+0.1
2,153,969	-		IAI47_10190	0.76	-1.5
2,154,060	-		IAI47_10190	0.86	-0.5
2,154,071	+		IAI47_10190	0.87	-0.1
2,154,071	+		IAI47_10190	0.87	+0.3
2,154,071	+		IAI47_10190	0.87	-2.1
2,154,072	-		IAI47_10190	0.87	-0.7
2,154,072	-		IAI47_10190	0.87	+0.0
2,154,072	-		IAI47_10190	0.87	+1.1
2,154,105	+				-0.7
2,154,106	-				+0.8
2,154,135	+				-0.6
2,154,135	+				-1.5
2,154,153	-				-0.5
2,154,153	-				+0.3
2,154,157	-				-1.4
2,154,259	+				-0.7
2,154,259	+				+0.0
2,154,260	-				+0.8
2,154,319	+				+0.4
2,154,334	-				-2.4
2,154,355	-				+0.8
2,154,364	+				-0.8
2,154,386	+				-0.2
2,154,401	+				+1.6
2,154,401	+				+0.4
2,154,402	-				-0.4
2,154,402	-				+2.3
2,154,435	+				+1.0
2,154,455	+				-0.3
2,154,455	+				-1.1
2,154,456	-				+1.2
2,154,456	-				-0.2
2,154,522	+				-0.2
2,154,522	+				-0.5
2,154,523	-				+0.2
2,154,528	-				+0.8
2,154,576	+				-0.5
2,154,646	+				-0.6
2,154,647	-				+0.4
2,154,665	+				-1.8
2,154,706	+		IAI47_10195	0.10	+0.5
2,154,706	+		IAI47_10195	0.10	+1.0
2,154,706	+		IAI47_10195	0.10	-0.5
2,154,706	+		IAI47_10195	0.10	-0.3
2,154,706	+		IAI47_10195	0.10	+0.5
2,154,706	+		IAI47_10195	0.10	-1.9
2,154,707	-		IAI47_10195	0.11	-1.2
2,154,707	-		IAI47_10195	0.11	-0.0
2,154,707	-		IAI47_10195	0.11	-0.3
2,154,707	-		IAI47_10195	0.11	+1.9
2,154,707	-		IAI47_10195	0.11	-0.6
2,154,707	-		IAI47_10195	0.11	+3.9
2,154,707	-		IAI47_10195	0.11	-1.8
2,154,818	+		IAI47_10195	0.30	+0.5
2,154,827	+		IAI47_10195	0.31	+0.8
2,154,827	+		IAI47_10195	0.31	+0.2
2,154,827	+		IAI47_10195	0.31	-0.4
2,154,827	+		IAI47_10195	0.31	-0.8
2,154,827	+		IAI47_10195	0.31	-0.1
2,154,827	+		IAI47_10195	0.31	-1.1
2,154,828	-		IAI47_10195	0.31	+1.2
2,154,828	-		IAI47_10195	0.31	-1.0
2,154,851	+		IAI47_10195	0.35	-1.0
2,154,852	-		IAI47_10195	0.35	+0.4
2,154,919	+		IAI47_10195	0.47	-0.6
2,154,937	+		IAI47_10195	0.50	-1.6
2,155,005	+		IAI47_10195	0.62	-1.3
2,155,005	+		IAI47_10195	0.62	-0.3
2,155,005	+		IAI47_10195	0.62	-0.0
2,155,005	+		IAI47_10195	0.62	-1.2
2,155,038	-		IAI47_10195	0.67	+0.2
2,155,038	-		IAI47_10195	0.67	-2.1
2,155,038	-		IAI47_10195	0.67	+0.6
2,155,038	-		IAI47_10195	0.67	-1.2
2,155,080	-		IAI47_10195	0.74	-0.2
2,155,124	+		IAI47_10195	0.82	+0.1
2,155,124	+		IAI47_10195	0.82	-1.1
2,155,124	+		IAI47_10195	0.82	+0.9
2,155,124	+		IAI47_10195	0.82	-0.7
2,155,124	+		IAI47_10195	0.82	-2.2
2,155,124	+		IAI47_10195	0.82	+0.5
2,155,125	-		IAI47_10195	0.82	+1.0
2,155,125	-		IAI47_10195	0.82	+0.0
2,155,125	-		IAI47_10195	0.82	+0.4
2,155,125	-		IAI47_10195	0.82	-1.1
2,155,125	-		IAI47_10195	0.82	+0.3
2,155,125	-		IAI47_10195	0.82	+0.1
2,155,125	-		IAI47_10195	0.82	-0.2
2,155,125	-		IAI47_10195	0.82	-0.6
2,155,125	-		IAI47_10195	0.82	+0.5
2,155,144	+		IAI47_10195	0.85	+0.3
2,155,144	+		IAI47_10195	0.85	+0.8
2,155,144	+		IAI47_10195	0.85	+0.5
2,155,144	+		IAI47_10195	0.85	-1.4
2,155,177	+				-0.9
2,155,195	-				-0.1