Strain Fitness in Pantoea sp. MT58 around IAI47_09305

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
1,959,527	+				+0.8
1,959,528	-				+0.3
1,959,528	-				+0.3
1,959,528	-				+0.8
1,959,528	-				+0.5
1,959,565	+				-0.2
1,959,565	+				-2.0
1,959,581	-				-0.8
1,959,581	-				+1.0
1,959,581	-				+0.8
1,959,581	-				-2.0
1,959,585	-				-0.8
1,959,598	-				-0.7
1,959,600	-				+0.9
1,959,625	+				-0.5
1,959,625	+				+0.2
1,959,625	+				-0.1
1,959,625	+				+0.2
1,959,625	+				+1.6
1,959,625	+				-0.7
1,959,625	+				+2.0
1,959,625	+				+1.8
1,959,626	-				-0.5
1,959,626	-				-0.0
1,959,629	-				+2.8
1,959,629	-				+1.6
1,959,648	+				+0.0
1,959,648	+				+0.6
1,959,648	+				+0.8
1,959,649	-				+0.8
1,959,649	-				+1.6
1,959,649	-				-0.3
1,959,653	-				-0.1
1,959,668	-				-0.0
1,959,668	-				+0.5
1,959,678	+				+0.3
1,959,689	+				-0.6
1,959,690	-				-1.0
1,959,706	+		IAI47_09300	0.10	-1.0
1,959,785	+		IAI47_09300	0.19	+0.5
1,959,785	+		IAI47_09300	0.19	-0.5
1,959,785	+		IAI47_09300	0.19	+0.1
1,959,786	-		IAI47_09300	0.19	+0.3
1,959,786	-		IAI47_09300	0.19	+0.2
1,959,786	-		IAI47_09300	0.19	+0.8
1,959,786	-		IAI47_09300	0.19	-0.5
1,959,786	-		IAI47_09300	0.19	-0.0
1,959,923	+		IAI47_09300	0.35	+0.0
1,959,924	-		IAI47_09300	0.35	-0.6
1,959,924	-		IAI47_09300	0.35	+0.8
1,960,099	+		IAI47_09300	0.56	-0.4
1,960,124	+		IAI47_09300	0.58	-0.5
1,960,125	-		IAI47_09300	0.59	+0.3
1,960,205	+		IAI47_09300	0.68	-2.5
1,960,205	+		IAI47_09300	0.68	+0.0
1,960,205	+		IAI47_09300	0.68	-1.2
1,960,206	-		IAI47_09300	0.68	+1.5
1,960,206	-		IAI47_09300	0.68	-1.8
1,960,206	-		IAI47_09300	0.68	+1.6
1,960,253	+		IAI47_09300	0.73	+0.6
1,960,253	+		IAI47_09300	0.73	+1.1
1,960,253	+		IAI47_09300	0.73	-0.8
1,960,254	-		IAI47_09300	0.73	+1.0
1,960,273	+		IAI47_09300	0.76	+0.2
1,960,366	+		IAI47_09300	0.86	-0.0
1,960,366	+		IAI47_09300	0.86	+0.1
1,960,388	+		IAI47_09300	0.89	-0.7
1,960,388	+		IAI47_09300	0.89	+0.0
1,960,389	-		IAI47_09300	0.89	+0.0
1,960,389	-		IAI47_09300	0.89	-1.3
1,960,399	+				-0.1
1,960,408	+				-2.7
1,960,408	+				+0.2
1,960,408	+				-1.7
1,960,409	-				-0.2
1,960,414	+				-0.8
1,960,414	+				-0.6
1,960,414	+				-0.9
1,960,414	+				+1.0
1,960,415	-				+0.8
1,960,421	+				-1.0
1,960,421	+				-1.0
1,960,421	+				-1.0
1,960,421	+				+0.7
1,960,421	+				-0.2
1,960,421	+				-1.4
1,960,421	+				-0.2
1,960,421	+				+0.3
1,960,421	+				-0.4
1,960,421	+				+0.5
1,960,421	+				+0.6
1,960,421	+				-0.3
1,960,422	-				+0.1
1,960,422	-				-1.0
1,960,422	-				-0.5
1,960,422	-				-1.4
1,960,422	-				-0.2
1,960,422	-				+1.4
1,960,437	+				-1.1
1,960,437	+				+2.0
1,960,438	-				+0.7
1,960,438	-				-1.9
1,960,438	-				+0.2
1,960,443	+				-0.2
1,960,443	+				-0.2
1,960,444	-				-0.4
1,960,471	+				+0.4
1,960,498	-				+0.3
1,960,516	+				-0.4
1,960,564	-				-0.2
1,960,564	-				-2.2
1,960,709	-		IAI47_09305	0.11	-0.8
1,960,919	-		IAI47_09305	0.21	-0.2
1,960,957	+		IAI47_09305	0.23	-1.2
1,960,958	-		IAI47_09305	0.23	+0.5
1,961,011	+		IAI47_09305	0.26	-2.4
1,961,128	+		IAI47_09305	0.32	-0.2
1,961,154	-		IAI47_09305	0.33	-0.8
1,961,157	-		IAI47_09305	0.33	-0.8
1,961,198	-		IAI47_09305	0.35	+1.1
1,961,375	-		IAI47_09305	0.44	-1.8
1,961,579	-		IAI47_09305	0.55	-0.8
1,961,624	-		IAI47_09305	0.57	+1.8
1,961,632	-		IAI47_09305	0.57	-0.8
1,962,054	+				+0.8
1,962,055	-		IAI47_09305	0.78	-1.2
1,962,301	+				-0.8
1,962,451	-				-1.5
1,962,524	-				+0.3
1,962,529	-				+0.1
1,962,538	-				-0.7
1,962,576	-				+0.8
1,962,699	+		IAI47_09310	0.20	-0.8
1,962,754	+		IAI47_09310	0.39	+0.2
1,962,754	+		IAI47_09310	0.39	+0.3
1,962,754	+		IAI47_09310	0.39	-0.4
1,962,755	-		IAI47_09310	0.39	+1.4
1,962,755	-		IAI47_09310	0.39	-0.4
1,962,755	-		IAI47_09310	0.39	+0.2
1,962,755	-		IAI47_09310	0.39	-1.5
1,962,755	-		IAI47_09310	0.39	+0.2
1,962,755	-		IAI47_09310	0.39	+0.8
1,962,774	+		IAI47_09310	0.46	-0.2
1,962,774	+		IAI47_09310	0.46	+0.8
1,962,795	-		IAI47_09310	0.53	+0.3
1,962,805	+		IAI47_09310	0.56	-0.1
1,962,838	+		IAI47_09310	0.68	+1.5
1,962,871	+		IAI47_09310	0.79	-1.5
1,962,871	+		IAI47_09310	0.79	-0.6
1,962,871	+		IAI47_09310	0.79	+0.1
1,962,872	-		IAI47_09310	0.79	-0.1
1,962,872	-		IAI47_09310	0.79	-1.3
1,962,919	+				+0.7
1,962,919	+				-1.2
1,962,919	+				+1.1
1,962,919	+				-0.4
1,962,919	+				+1.2
1,962,920	-				+0.3
1,962,920	-				+0.8
1,962,920	-				-2.2
1,963,050	-				-0.2
1,963,050	-				+1.0
1,963,062	+				-0.2
1,963,063	-				-3.3
1,963,063	-				-0.5
1,963,163	+		IAI47_09315	0.12	+2.0
1,963,187	+		IAI47_09315	0.13	+0.8
1,963,187	+		IAI47_09315	0.13	-0.5
1,963,187	+		IAI47_09315	0.13	-0.8
1,963,187	+		IAI47_09315	0.13	+0.1
1,963,188	-		IAI47_09315	0.13	-1.8
1,963,238	+		IAI47_09315	0.15	+1.3
1,963,238	+		IAI47_09315	0.15	+0.2
1,963,238	+		IAI47_09315	0.15	+1.3
1,963,239	-		IAI47_09315	0.15	+0.1
1,963,239	-		IAI47_09315	0.15	-0.3
1,963,239	-		IAI47_09315	0.15	-0.2
1,963,373	+		IAI47_09315	0.22	+0.2
1,963,373	+		IAI47_09315	0.22	+0.4
1,963,373	+		IAI47_09315	0.22	-0.2
1,963,374	-		IAI47_09315	0.22	+0.8
1,963,374	-		IAI47_09315	0.22	+0.5
1,963,376	+		IAI47_09315	0.22	+1.3
1,963,376	+		IAI47_09315	0.22	+0.8
1,963,376	+		IAI47_09315	0.22	-0.8
1,963,376	+		IAI47_09315	0.22	+0.3
1,963,376	+		IAI47_09315	0.22	+0.8
1,963,376	+		IAI47_09315	0.22	+0.8
1,963,377	-		IAI47_09315	0.22	-0.6
1,963,377	-		IAI47_09315	0.22	-0.8
1,963,377	-		IAI47_09315	0.22	-0.6
1,963,377	-		IAI47_09315	0.22	-0.9
1,963,377	-		IAI47_09315	0.22	-0.1
1,963,454	+		IAI47_09315	0.26	-0.1
1,963,454	+		IAI47_09315	0.26	-0.8
1,963,455	-		IAI47_09315	0.26	+0.0
1,963,455	-		IAI47_09315	0.26	-0.6
1,963,455	-		IAI47_09315	0.26	-0.8
1,963,458	-		IAI47_09315	0.26	-0.0