Strain Fitness in Pantoea sp. MT58 around IAI47_08355

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
1,769,135	+		IAI47_08350	0.52	-0.3
1,769,136	-		IAI47_08350	0.52	-0.7
1,769,157	+		IAI47_08350	0.53	+0.2
1,769,210	+		IAI47_08350	0.56	+0.1
1,769,211	-		IAI47_08350	0.56	+0.1
1,769,211	-		IAI47_08350	0.56	-0.3
1,769,220	-				+0.2
1,769,220	-		IAI47_08350	0.56	-0.1
1,769,220	-		IAI47_08350	0.56	-1.3
1,769,225	+		IAI47_08350	0.57	+0.8
1,769,226	-		IAI47_08350	0.57	+1.3
1,769,226	-		IAI47_08350	0.57	-0.0
1,769,270	+		IAI47_08350	0.59	+0.3
1,769,349	+		IAI47_08350	0.63	-0.8
1,769,349	+		IAI47_08350	0.63	+0.0
1,769,350	-		IAI47_08350	0.63	-0.0
1,769,371	+		IAI47_08350	0.64	-1.1
1,769,453	+		IAI47_08350	0.68	-0.1
1,769,454	-		IAI47_08350	0.68	+2.0
1,769,454	-		IAI47_08350	0.68	+0.7
1,769,489	+		IAI47_08350	0.69	+0.7
1,769,489	+		IAI47_08350	0.69	+0.9
1,769,490	-		IAI47_08350	0.69	+0.4
1,769,490	-		IAI47_08350	0.69	+1.7
1,769,490	-		IAI47_08350	0.69	+0.1
1,769,507	+		IAI47_08350	0.70	+0.7
1,769,587	+		IAI47_08350	0.74	-0.4
1,769,587	+		IAI47_08350	0.74	+2.1
1,769,588	-		IAI47_08350	0.74	-1.6
1,769,712	-		IAI47_08350	0.80	+1.3
1,769,831	+		IAI47_08350	0.86	+0.7
1,770,089	+				+0.6
1,770,104	+				+0.6
1,770,105	-				+0.7
1,770,105	-				-0.2
1,770,129	+				-0.8
1,770,129	+				+0.7
1,770,129	+				-0.0
1,770,130	-				+0.6
1,770,156	+				-0.4
1,770,156	+				-1.3
1,770,156	+				-0.3
1,770,157	-				-1.3
1,770,219	+		IAI47_08355	0.22	-0.6
1,770,222	+		IAI47_08355	0.23	-0.4
1,770,222	+		IAI47_08355	0.23	-0.6
1,770,223	-		IAI47_08355	0.23	-0.1
1,770,298	+		IAI47_08355	0.42	-1.1
1,770,298	+		IAI47_08355	0.42	-0.3
1,770,299	-		IAI47_08355	0.43	-0.8
1,770,299	-		IAI47_08355	0.43	-0.6
1,770,309	-		IAI47_08355	0.45	+0.7
1,770,515	+				+0.0
1,770,515	+				+0.4
1,770,515	+				-1.1
1,770,515	+				-0.7
1,770,516	-				+1.0
1,770,521	+				-1.1
1,770,573	+				-1.1
1,770,573	+				-0.3
1,770,573	+				-0.3
1,770,573	+				-0.9
1,770,573	+				-0.1
1,770,573	+				+0.7
1,770,573	+				-0.7
1,770,573	+				-1.6
1,770,573	+				+0.2
1,770,574	-				+1.2
1,770,574	-				+0.9
1,770,574	-				+0.6
1,770,574	-				+0.2
1,770,574	-				+1.2
1,770,574	-				+0.7
1,770,574	-				-1.4
1,770,574	-				-2.6
1,770,574	-				+1.1
1,770,624	+				-0.4
1,770,635	-				+0.3
1,770,635	-				-1.7
1,770,698	+				+0.6
1,770,711	+				-2.6
1,770,711	+				-0.3
1,770,711	+				+0.0
1,770,712	-				-0.4
1,770,712	-				-0.8
1,770,718	+				+0.4
1,770,718	+				+0.4
1,770,718	+				+0.5
1,770,718	+				-0.1
1,770,718	+				+0.1
1,770,719	-				-1.3
1,770,719	-				+0.7
1,770,795	+		IAI47_08360	0.13	+0.0
1,770,796	-		IAI47_08360	0.13	-1.1
1,770,800	+		IAI47_08360	0.14	-0.8
1,770,800	+		IAI47_08360	0.14	-1.3
1,770,800	+		IAI47_08360	0.14	+1.1
1,770,800	+		IAI47_08360	0.14	-0.3
1,770,800	+		IAI47_08360	0.14	-1.6
1,770,801	-		IAI47_08360	0.14	-1.7
1,770,801	-		IAI47_08360	0.14	-0.3
1,770,801	-		IAI47_08360	0.14	+0.3
1,770,801	-		IAI47_08360	0.14	+1.3
1,770,890	+		IAI47_08360	0.23	+0.7
1,770,890	+		IAI47_08360	0.23	+0.6
1,770,920	-		IAI47_08360	0.26	-1.5
1,770,920	-		IAI47_08360	0.26	+1.4
1,770,942	+		IAI47_08360	0.28	+1.0
1,771,010	+		IAI47_08360	0.35	-0.5
1,771,014	+		IAI47_08360	0.35	+0.6
1,771,014	+		IAI47_08360	0.35	-1.1
1,771,122	-		IAI47_08360	0.46	+0.4
1,771,122	-		IAI47_08360	0.46	+0.4
1,771,276	-		IAI47_08360	0.61	+0.2
1,771,286	+		IAI47_08360	0.62	+3.7
1,771,344	+		IAI47_08360	0.68	+0.2
1,771,345	-		IAI47_08360	0.68	-0.9
1,771,349	+		IAI47_08360	0.69	+1.1
1,771,349	+				+0.2
1,771,349	+		IAI47_08360	0.69	-0.3
1,771,349	+		IAI47_08360	0.69	+0.2
1,771,349	+		IAI47_08360	0.69	+0.2
1,771,350	-		IAI47_08360	0.69	+0.4
1,771,350	-		IAI47_08360	0.69	+0.9
1,771,365	+		IAI47_08360	0.70	+0.6
1,771,366	-		IAI47_08360	0.70	-1.8
1,771,366	-		IAI47_08360	0.70	+1.0
1,771,379	+		IAI47_08360	0.72	+1.0
1,771,379	+		IAI47_08360	0.72	+3.9
1,771,379	+		IAI47_08360	0.72	+0.7
1,771,380	-		IAI47_08360	0.72	-0.4
1,771,380	-		IAI47_08360	0.72	+0.1
1,771,380	-		IAI47_08360	0.72	-0.8
1,771,380	-		IAI47_08360	0.72	+1.7
1,771,404	+		IAI47_08360	0.74	+1.0
1,771,405	-		IAI47_08360	0.74	+0.4
1,771,499	+		IAI47_08360	0.84	+0.7