Strain Fitness in Pantoea sp. MT58 around IAI47_02350

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_02340 and IAI47_02345 are separated by 182 nucleotidesIAI47_02345 and IAI47_02350 are separated by 14 nucleotidesIAI47_02350 and IAI47_02355 are separated by 34 nucleotidesIAI47_02355 and IAI47_02360 are separated by 221 nucleotides IAI47_02340: IAI47_02340 - 23S ribosomal RNA, at 482,435 to 485,369 _02340 IAI47_02345: IAI47_02345 - 5S ribosomal RNA, at 485,552 to 485,667 _02345 IAI47_02350: IAI47_02350 - tRNA-Thr, at 485,682 to 485,757 _02350 IAI47_02355: IAI47_02355 - 5S ribosomal RNA, at 485,792 to 485,907 _02355 IAI47_02360: IAI47_02360 - amino acid ABC transporter ATP-binding protein, at 486,129 to 486,890 _02360 Position (kb) 485 486Strain fitness (log2 ratio) -2 -1 0 1 2 3at 485.395 kb on + strandat 485.405 kb on + strandat 485.470 kb on + strandat 485.478 kb on + strandat 485.478 kb on + strandat 485.478 kb on + strandat 485.478 kb on + strandat 485.478 kb on + strandat 485.478 kb on + strandat 485.478 kb on + strandat 485.479 kb on - strandat 485.521 kb on + strandat 485.521 kb on + strandat 485.652 kb on + strand, within IAI47_02345at 485.652 kb on + strand, within IAI47_02345at 485.676 kb on + strandat 485.747 kb on + strand, within IAI47_02350at 485.780 kb on + strandat 485.780 kb on + strandat 485.780 kb on + strandat 485.914 kb on + strandat 485.914 kb on + strandat 485.914 kb on + strandat 485.914 kb on + strandat 485.914 kb on + strandat 485.914 kb on + strandat 485.914 kb on + strandat 485.914 kb on + strandat 485.933 kb on + strandat 485.933 kb on + strandat 485.933 kb on + strandat 485.933 kb on + strandat 485.989 kb on - strandat 485.989 kb on - strandat 486.001 kb on + strandat 486.001 kb on + strandat 486.001 kb on + strandat 486.001 kb on + strandat 486.001 kb on + strandat 486.001 kb on + strandat 486.002 kb on - strandat 486.002 kb on - strandat 486.002 kb on - strandat 486.109 kb on + strandat 486.109 kb on + strandat 486.109 kb on + strandat 486.109 kb on + strandat 486.109 kb on + strandat 486.110 kb on - strandat 486.110 kb on - strandat 486.110 kb on - strandat 486.110 kb on - strandat 486.110 kb on - strandat 486.126 kb on + strandat 486.127 kb on - strandat 486.137 kb on + strandat 486.147 kb on + strandat 486.174 kb on - strandat 486.174 kb on - strandat 486.174 kb on - strandat 486.230 kb on + strand, within IAI47_02360at 486.230 kb on + strand, within IAI47_02360at 486.231 kb on - strand, within IAI47_02360at 486.231 kb on - strand, within IAI47_02360at 486.324 kb on - strand, within IAI47_02360at 486.339 kb on - strand, within IAI47_02360at 486.383 kb on + strand, within IAI47_02360at 486.384 kb on - strand, within IAI47_02360at 486.384 kb on - strand, within IAI47_02360at 486.384 kb on - strand, within IAI47_02360at 486.384 kb on - strand, within IAI47_02360at 486.389 kb on + strand, within IAI47_02360at 486.398 kb on + strand, within IAI47_02360at 486.398 kb on + strand, within IAI47_02360at 486.398 kb on + strand, within IAI47_02360at 486.398 kb on + strand, within IAI47_02360at 486.398 kb on + strand, within IAI47_02360at 486.399 kb on - strand, within IAI47_02360at 486.399 kb on - strand, within IAI47_02360at 486.399 kb on - strand, within IAI47_02360at 486.399 kb on - strand, within IAI47_02360at 486.462 kb on - strand, within IAI47_02360at 486.462 kb on - strand, within IAI47_02360at 486.496 kb on + strand, within IAI47_02360at 486.496 kb on + strand, within IAI47_02360at 486.496 kb on + strand, within IAI47_02360at 486.497 kb on - strand, within IAI47_02360at 486.497 kb on - strand, within IAI47_02360at 486.527 kb on + strand, within IAI47_02360at 486.528 kb on - strand, within IAI47_02360at 486.560 kb on + strand, within IAI47_02360at 486.561 kb on - strand, within IAI47_02360at 486.561 kb on - strand, within IAI47_02360at 486.561 kb on - strand, within IAI47_02360at 486.561 kb on - strand, within IAI47_02360at 486.561 kb on - strand, within IAI47_02360at 486.573 kb on + strand, within IAI47_02360at 486.573 kb on + strand, within IAI47_02360at 486.574 kb on - strand, within IAI47_02360at 486.596 kb on + strand, within IAI47_02360at 486.597 kb on - strand, within IAI47_02360at 486.609 kb on + strand, within IAI47_02360at 486.609 kb on + strand, within IAI47_02360at 486.609 kb on + strand, within IAI47_02360at 486.609 kb on + strand, within IAI47_02360at 486.609 kb on + strand, within IAI47_02360at 486.610 kb on - strand, within IAI47_02360at 486.618 kb on + strand, within IAI47_02360at 486.618 kb on + strand, within IAI47_02360at 486.618 kb on + strand, within IAI47_02360at 486.618 kb on + strand, within IAI47_02360at 486.618 kb on + strand, within IAI47_02360at 486.619 kb on - strand, within IAI47_02360at 486.619 kb on - strand, within IAI47_02360at 486.713 kb on + strand, within IAI47_02360at 486.713 kb on + strand, within IAI47_02360at 486.713 kb on + strand, within IAI47_02360at 486.713 kb on + strand, within IAI47_02360at 486.713 kb on + strand, within IAI47_02360at 486.713 kb on + strand, within IAI47_02360at 486.714 kb on - strand, within IAI47_02360at 486.714 kb on - strand, within IAI47_02360at 486.716 kb on + strand, within IAI47_02360at 486.716 kb on + strand, within IAI47_02360at 486.716 kb on + strand, within IAI47_02360at 486.716 kb on + strand, within IAI47_02360at 486.717 kb on - strand, within IAI47_02360at 486.717 kb on - strand, within IAI47_02360at 486.717 kb on - strand, within IAI47_02360

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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485,395 + -0.6
485,405 + -0.7
485,470 + +0.2
485,478 + +0.4
485,478 + -1.5
485,478 + +0.8
485,478 + +0.8
485,478 + -0.4
485,478 + +0.1
485,478 + +0.6
485,479 - +0.4
485,521 + +0.6
485,521 + -0.7
485,652 + IAI47_02345 0.86 +1.0
485,652 + IAI47_02345 0.86 -0.4
485,676 + +0.2
485,747 + IAI47_02350 0.86 -0.7
485,780 + -0.2
485,780 + -0.6
485,780 + +0.5
485,914 + +0.5
485,914 + +0.1
485,914 + +1.5
485,914 + +1.4
485,914 + +0.1
485,914 + +0.7
485,914 + -0.8
485,914 + +1.2
485,933 + +0.0
485,933 + +0.4
485,933 + -0.7
485,933 + -2.2
485,989 - -1.0
485,989 - -0.7
486,001 + -0.7
486,001 + +0.2
486,001 + +0.4
486,001 + -1.7
486,001 + -0.3
486,001 + +0.3
486,002 - +0.5
486,002 - -2.6
486,002 - -0.2
486,109 + +1.3
486,109 + +2.2
486,109 + -0.2
486,109 + +0.7
486,109 + +0.4
486,110 - +0.6
486,110 - +1.4
486,110 - +0.1
486,110 - -1.5
486,110 - -0.7
486,126 + -0.1
486,127 - -0.1
486,137 + +0.7
486,147 + +0.1
486,174 - +0.3
486,174 - -0.2
486,174 - +0.4
486,230 + IAI47_02360 0.13 +0.3
486,230 + IAI47_02360 0.13 -0.2
486,231 - IAI47_02360 0.13 +0.4
486,231 - IAI47_02360 0.13 -0.7
486,324 - IAI47_02360 0.26 +1.0
486,339 - IAI47_02360 0.28 -1.9
486,383 + IAI47_02360 0.33 +0.8
486,384 - IAI47_02360 0.33 +2.4
486,384 - IAI47_02360 0.33 +1.0
486,384 - IAI47_02360 0.33 +1.2
486,384 - IAI47_02360 0.33 -0.5
486,389 + IAI47_02360 0.34 +2.3
486,398 + IAI47_02360 0.35 +0.6
486,398 + IAI47_02360 0.35 -0.2
486,398 + IAI47_02360 0.35 -0.4
486,398 + IAI47_02360 0.35 +0.8
486,398 + IAI47_02360 0.35 +1.3
486,399 - IAI47_02360 0.35 -0.0
486,399 - IAI47_02360 0.35 +0.6
486,399 - IAI47_02360 0.35 +0.3
486,399 - IAI47_02360 0.35 +0.8
486,462 - IAI47_02360 0.44 -0.4
486,462 - IAI47_02360 0.44 +1.0
486,496 + IAI47_02360 0.48 +0.5
486,496 + IAI47_02360 0.48 -0.2
486,496 + IAI47_02360 0.48 -0.5
486,497 - IAI47_02360 0.48 +0.4
486,497 - IAI47_02360 0.48 +0.6
486,527 + IAI47_02360 0.52 +0.4
486,528 - IAI47_02360 0.52 +0.7
486,560 + IAI47_02360 0.57 -0.0
486,561 - IAI47_02360 0.57 +1.8
486,561 - IAI47_02360 0.57 -0.4
486,561 - IAI47_02360 0.57 +0.6
486,561 - IAI47_02360 0.57 +0.3
486,561 - IAI47_02360 0.57 -0.5
486,573 + IAI47_02360 0.58 -1.5
486,573 + IAI47_02360 0.58 +1.6
486,574 - IAI47_02360 0.58 -0.7
486,596 + IAI47_02360 0.61 -2.5
486,597 - IAI47_02360 0.61 +0.1
486,609 + IAI47_02360 0.63 +0.5
486,609 + IAI47_02360 0.63 -0.2
486,609 + IAI47_02360 0.63 -0.3
486,609 + IAI47_02360 0.63 -0.2
486,609 + IAI47_02360 0.63 +0.2
486,610 - IAI47_02360 0.63 -0.2
486,618 + IAI47_02360 0.64 +1.4
486,618 + IAI47_02360 0.64 -0.9
486,618 + IAI47_02360 0.64 +0.3
486,618 + IAI47_02360 0.64 -0.2
486,618 + IAI47_02360 0.64 +0.4
486,619 - IAI47_02360 0.64 -0.4
486,619 - IAI47_02360 0.64 +0.0
486,713 + IAI47_02360 0.77 -1.2
486,713 + IAI47_02360 0.77 -0.5
486,713 + IAI47_02360 0.77 +0.8
486,713 + IAI47_02360 0.77 +1.1
486,713 + IAI47_02360 0.77 -2.3
486,713 + IAI47_02360 0.77 +2.4
486,714 - IAI47_02360 0.77 +0.4
486,714 - IAI47_02360 0.77 -0.2
486,716 + IAI47_02360 0.77 -0.2
486,716 + IAI47_02360 0.77 -0.5
486,716 + IAI47_02360 0.77 +2.8
486,716 + IAI47_02360 0.77 -0.6
486,717 - IAI47_02360 0.77 -0.7
486,717 - IAI47_02360 0.77 +0.8
486,717 - IAI47_02360 0.77 -0.7

Or see this region's nucleotide sequence