Strain Fitness in Pantoea sp. MT58 around IAI47_19455

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
119,006	+				-2.5
119,006	+				-0.7
119,007	-				-1.2
119,016	-				+0.6
119,016	-				-1.2
119,028	+				-0.4
119,028	+				+0.3
119,028	+				-0.5
119,028	+				-1.2
119,028	+				+0.5
119,029	-				+0.5
119,046	+				-1.5
119,046	+				-1.3
119,046	+				-0.6
119,047	-				+1.6
119,047	-				+0.9
119,047	-				+0.2
119,047	-				-0.4
119,052	+				-0.8
119,052	+				-1.0
119,053	-				+0.4
119,053	-				-0.2
119,053	-				+0.1
119,079	+				-1.2
119,080	-				+0.6
119,080	-				+0.8
119,094	+				+0.8
119,094	+				-0.2
119,095	-				+1.1
119,139	+				+0.4
119,139	+				-0.1
119,139	+				-0.2
119,139	+				-0.1
119,139	+				-0.7
119,139	+				+0.5
119,139	+				+2.8
119,139	+				+0.4
119,140	-				+1.4
119,140	-				-0.9
119,140	-				-1.4
119,140	-				+0.3
119,207	-				+1.0
119,217	+				+0.2
119,217	+				+2.0
119,217	+				+0.1
119,218	-				-0.6
119,239	+				-0.2
119,240	-				-1.2
119,249	+				-0.4
119,250	-				-0.2
119,250	-				+0.2
119,274	+				+0.9
119,274	+				+0.2
119,275	-				+0.4
119,365	-		IAI47_19450	0.19	+0.1
119,385	+		IAI47_19450	0.22	-0.5
119,396	-		IAI47_19450	0.24	+0.6
119,423	+		IAI47_19450	0.28	+0.8
119,424	-		IAI47_19450	0.28	+0.5
119,541	+		IAI47_19450	0.46	-0.2
119,541	+		IAI47_19450	0.46	-0.9
119,542	-		IAI47_19450	0.46	+0.2
119,554	-		IAI47_19450	0.47	-0.6
119,577	-		IAI47_19450	0.51	+0.1
119,577	-		IAI47_19450	0.51	+0.8
119,577	-		IAI47_19450	0.51	-0.2
119,586	+		IAI47_19450	0.52	-0.7
119,586	+		IAI47_19450	0.52	-0.0
119,587	-		IAI47_19450	0.52	-0.8
119,597	-		IAI47_19450	0.54	-1.1
119,597	-		IAI47_19450	0.54	+1.4
119,597	-		IAI47_19450	0.54	-1.2
119,600	+		IAI47_19450	0.54	-0.8
119,600	+		IAI47_19450	0.54	-0.7
119,600	+		IAI47_19450	0.54	+1.4
119,600	+		IAI47_19450	0.54	-0.8
119,600	+		IAI47_19450	0.54	+1.3
119,600	+		IAI47_19450	0.54	-0.4
119,600	+		IAI47_19450	0.54	+0.3
119,600	+		IAI47_19450	0.54	-0.2
119,600	+		IAI47_19450	0.54	+1.2
119,600	+		IAI47_19450	0.54	+0.3
119,600	+		IAI47_19450	0.54	+0.5
119,601	-		IAI47_19450	0.54	+3.3
119,601	-		IAI47_19450	0.54	-0.3
119,601	-		IAI47_19450	0.54	+0.1
119,601	-		IAI47_19450	0.54	-1.7
119,601	-		IAI47_19450	0.54	+3.1
119,601	-		IAI47_19450	0.54	-1.0
119,601	-		IAI47_19450	0.54	-0.0
119,601	-		IAI47_19450	0.54	-1.5
119,601	-		IAI47_19450	0.54	+1.1
119,601	-		IAI47_19450	0.54	+1.8
119,601	-		IAI47_19450	0.54	-0.4
119,601	-		IAI47_19450	0.54	+1.1
119,601	-		IAI47_19450	0.54	-0.2
119,604	+		IAI47_19450	0.55	-0.6
119,604	+		IAI47_19450	0.55	-1.8
119,604	+		IAI47_19450	0.55	-1.5
119,604	+		IAI47_19450	0.55	-1.2
119,604	+		IAI47_19450	0.55	+0.2
119,604	+		IAI47_19450	0.55	-0.8
119,604	+		IAI47_19450	0.55	-0.2
119,604	+		IAI47_19450	0.55	-0.8
119,604	+		IAI47_19450	0.55	-0.4
119,604	+		IAI47_19450	0.55	-1.0
119,604	+		IAI47_19450	0.55	-0.2
119,604	+		IAI47_19450	0.55	-0.2
119,605	-		IAI47_19450	0.55	-1.1
119,605	-		IAI47_19450	0.55	+0.8
119,605	-		IAI47_19450	0.55	+0.1
119,605	-		IAI47_19450	0.55	+0.5
119,605	-				-0.5
119,605	-		IAI47_19450	0.55	-0.3
119,605	-		IAI47_19450	0.55	-2.4
119,605	-		IAI47_19450	0.55	+0.8
119,605	-		IAI47_19450	0.55	-2.0
119,605	-		IAI47_19450	0.55	+0.5
119,605	-		IAI47_19450	0.55	-2.4
119,606	+		IAI47_19450	0.55	+0.4
119,606	+		IAI47_19450	0.55	-0.9
119,606	+		IAI47_19450	0.55	-0.8
119,606	+		IAI47_19450	0.55	+2.2
119,607	-		IAI47_19450	0.55	-0.9
119,607	-		IAI47_19450	0.55	-0.8
119,607	-		IAI47_19450	0.55	-0.8
119,612	+		IAI47_19450	0.56	-0.1
119,613	-		IAI47_19450	0.56	-0.9
119,613	-		IAI47_19450	0.56	+0.8
119,662	+		IAI47_19450	0.64	-0.3
119,662	+		IAI47_19450	0.64	+0.1
119,730	-		IAI47_19450	0.74	-0.5
119,744	+		IAI47_19450	0.76	+1.2
119,744	+		IAI47_19450	0.76	+1.2
119,744	+		IAI47_19450	0.76	-2.7
119,744	+		IAI47_19450	0.76	+1.0
119,744	+		IAI47_19450	0.76	+1.0
119,744	+		IAI47_19450	0.76	-0.2
119,744	+		IAI47_19450	0.76	+0.4
119,744	+		IAI47_19450	0.76	+0.8
119,745	-		IAI47_19450	0.76	-1.5
119,745	-		IAI47_19450	0.76	+0.2
119,783	+		IAI47_19450	0.82	-0.4
119,783	+		IAI47_19450	0.82	-0.7
119,784	-		IAI47_19450	0.82	+1.8
119,835	+		IAI47_19450	0.89	+0.4
119,835	+		IAI47_19450	0.89	+0.5
119,835	+		IAI47_19450	0.89	-1.1
119,835	+		IAI47_19450	0.89	+2.1
119,835	+		IAI47_19450	0.89	-0.1
119,836	-		IAI47_19450	0.89	-0.8
119,836	-		IAI47_19450	0.89	-1.4
119,836	-		IAI47_19450	0.89	+0.4
119,836	-		IAI47_19450	0.89	+0.4
119,836	-		IAI47_19450	0.89	+1.4
119,837	+		IAI47_19450	0.90	+0.2
119,837	+		IAI47_19450	0.90	-0.5
119,837	+		IAI47_19450	0.90	+0.5
119,837	+		IAI47_19450	0.90	-0.3
119,837	+		IAI47_19450	0.90	-1.5
119,837	+		IAI47_19450	0.90	+1.0
119,837	+		IAI47_19450	0.90	+0.8
119,838	-		IAI47_19450	0.90	+0.8
119,838	-		IAI47_19450	0.90	+0.2
119,838	-		IAI47_19450	0.90	-0.2
119,838	-		IAI47_19450	0.90	-1.0
119,838	-		IAI47_19450	0.90	-0.2
119,838	-		IAI47_19450	0.90	-1.7
119,838	-		IAI47_19450	0.90	+0.8
119,889	+				-2.5
119,889	+				-1.2
119,890	-				+0.3
119,890	-				+1.0
119,904	+				+0.8
119,982	-				-3.0
119,989	+				-0.2
119,989	+				-1.0
120,008	+				-1.1
120,012	+				+0.8
120,012	+				+0.1
120,012	+				-0.2
120,013	-				+2.0
120,184	+		IAI47_19455	0.23	+2.8
120,184	+		IAI47_19455	0.23	-0.2
120,185	-		IAI47_19455	0.23	-0.8
120,236	+		IAI47_19455	0.29	-1.5
120,236	+		IAI47_19455	0.29	+0.7
120,236	+		IAI47_19455	0.29	-1.4
120,237	-		IAI47_19455	0.29	+1.4
120,261	-		IAI47_19455	0.32	-1.5
120,294	-		IAI47_19455	0.36	+2.4
120,345	+		IAI47_19455	0.42	-0.0
120,345	+		IAI47_19455	0.42	+0.3
120,345	+		IAI47_19455	0.42	+1.0
120,345	+		IAI47_19455	0.42	-0.8
120,345	+		IAI47_19455	0.42	-0.5
120,346	-		IAI47_19455	0.42	-1.1
120,346	-		IAI47_19455	0.42	-0.2
120,346	-		IAI47_19455	0.42	-1.0
120,346	-		IAI47_19455	0.42	-1.5
120,346	-		IAI47_19455	0.42	+0.1
120,349	+		IAI47_19455	0.42	+1.4
120,349	+		IAI47_19455	0.42	-0.3
120,358	+		IAI47_19455	0.43	-0.4
120,358	+		IAI47_19455	0.43	+0.8
120,359	-		IAI47_19455	0.44	+1.0
120,359	-		IAI47_19455	0.44	-0.2
120,359	-		IAI47_19455	0.44	+0.5
120,401	+		IAI47_19455	0.48	-0.5
120,402	-		IAI47_19455	0.49	-1.5
120,476	-		IAI47_19455	0.57	+0.2
120,506	+		IAI47_19455	0.61	-0.3
120,506	+		IAI47_19455	0.61	+3.0
120,506	+		IAI47_19455	0.61	+2.1
120,507	-		IAI47_19455	0.61	+0.1
120,507	-		IAI47_19455	0.61	-1.0
120,557	+		IAI47_19455	0.67	+0.1
120,557	+		IAI47_19455	0.67	-2.5
120,626	+		IAI47_19455	0.75	-1.0
120,626	+		IAI47_19455	0.75	-0.9
120,639	-		IAI47_19455	0.76	+1.4
120,639	-		IAI47_19455	0.76	+1.8
120,758	+				+1.2
120,758	+				-0.7
120,759	-				-0.2
120,760	+				+0.2
120,761	-				+1.1
120,811	-				-1.0
120,822	+				-0.1
120,822	+				-1.2
120,856	+				-0.3
120,856	+				+0.4
120,856	+				-0.2
120,856	+				-0.1
120,857	-				-0.0
120,908	+				-1.8
120,909	-				+0.1
120,913	+				+0.3
120,914	-				-1.7
120,914	-				+0.2
120,914	-				-0.7
121,036	+				-1.2
121,091	+		IAI47_19460	0.12	-0.3
121,331	+		IAI47_19460	0.38	-0.5
121,360	+		IAI47_19460	0.42	-0.9
121,361	-		IAI47_19460	0.42	+0.6
121,361	-		IAI47_19460	0.42	-0.4
121,363	+		IAI47_19460	0.42	-0.5
121,363	+		IAI47_19460	0.42	-0.1
121,363	+		IAI47_19460	0.42	-1.2
121,363	+		IAI47_19460	0.42	-0.7
121,364	-		IAI47_19460	0.42	+0.7
121,364	-		IAI47_19460	0.42	-0.9
121,394	-		IAI47_19460	0.45	+1.1
121,394	-		IAI47_19460	0.45	+0.7
121,411	+		IAI47_19460	0.47	+0.2
121,411	+		IAI47_19460	0.47	-1.8
121,411	+		IAI47_19460	0.47	-0.8
121,412	-		IAI47_19460	0.47	-2.2
121,412	-		IAI47_19460	0.47	+0.3
121,414	+		IAI47_19460	0.48	+1.3
121,415	-		IAI47_19460	0.48	+0.7
121,541	-		IAI47_19460	0.62	+1.3
121,541	-		IAI47_19460	0.62	-0.0
121,541	-		IAI47_19460	0.62	+0.8
121,541	-		IAI47_19460	0.62	+0.8
121,541	-		IAI47_19460	0.62	+1.4
121,541	-		IAI47_19460	0.62	+0.8
121,541	-		IAI47_19460	0.62	-0.1
121,551	-		IAI47_19460	0.63	-0.4
121,551	-		IAI47_19460	0.63	+1.9
121,553	+		IAI47_19460	0.63	+1.2
121,553	+		IAI47_19460	0.63	+1.8
121,554	-		IAI47_19460	0.63	-0.2
121,650	+		IAI47_19460	0.74	-0.6
121,650	+		IAI47_19460	0.74	+0.5
121,687	-		IAI47_19460	0.78	-0.1
121,696	-		IAI47_19460	0.79	-1.1
121,696	-		IAI47_19460	0.79	-0.2
121,732	+		IAI47_19460	0.83	-1.7
121,747	-		IAI47_19460	0.85	-1.2
121,747	-		IAI47_19460	0.85	-0.0
121,757	+		IAI47_19460	0.86	-0.1
121,757	+		IAI47_19460	0.86	-0.3
121,757	+		IAI47_19460	0.86	+1.7
121,790	+		IAI47_19460	0.90	+0.6
121,790	+		IAI47_19460	0.90	-0.8
121,790	+		IAI47_19460	0.90	+0.5
121,790	+		IAI47_19460	0.90	-0.6
121,790	+		IAI47_19460	0.90	-2.5
121,790	+		IAI47_19460	0.90	-0.1
121,790	+		IAI47_19460	0.90	-0.8
121,790	+		IAI47_19460	0.90	+0.2
121,790	+		IAI47_19460	0.90	-0.6
121,790	+		IAI47_19460	0.90	+0.1
121,791	-		IAI47_19460	0.90	-0.3
121,791	-		IAI47_19460	0.90	+2.0
121,791	-		IAI47_19460	0.90	+0.4
121,791	-		IAI47_19460	0.90	+0.2
121,791	-		IAI47_19460	0.90	-0.8
121,791	-		IAI47_19460	0.90	+1.0
121,791	-		IAI47_19460	0.90	+0.8
121,791	-		IAI47_19460	0.90	+2.4