Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_19030 and IAI47_19035 are separated by 472 nucleotides IAI47_19035 and IAI47_19040 are separated by 160 nucleotides IAI47_19040 and IAI47_19045 are separated by 195 nucleotides
IAI47_19030: IAI47_19030 - hypothetical protein, at 37,143 to 37,337
_19030
IAI47_19035: IAI47_19035 - transcriptional regulator, at 37,810 to 38,064
_19035
IAI47_19040: IAI47_19040 - hypothetical protein, at 38,225 to 38,518
_19040
IAI47_19045: IAI47_19045 - two-component-system connector protein YcgZ, at 38,714 to 38,959
_19045
Position (kb) 37
38
39 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 36.828 kb on - strand at 36.828 kb on - strand at 36.906 kb on + strand at 36.941 kb on + strand at 36.942 kb on - strand at 36.957 kb on + strand at 36.957 kb on + strand at 36.968 kb on + strand at 36.977 kb on - strand at 36.978 kb on + strand at 36.978 kb on + strand at 36.979 kb on - strand at 36.984 kb on - strand at 37.015 kb on + strand at 37.015 kb on + strand at 37.015 kb on + strand at 37.015 kb on + strand at 37.015 kb on + strand at 37.016 kb on - strand at 37.018 kb on + strand at 37.018 kb on + strand at 37.032 kb on - strand at 37.034 kb on - strand at 37.037 kb on + strand at 37.037 kb on + strand at 37.038 kb on - strand at 37.038 kb on - strand at 37.062 kb on - strand at 37.063 kb on + strand at 37.064 kb on - strand at 37.103 kb on + strand at 37.116 kb on + strand at 37.116 kb on + strand at 37.116 kb on + strand at 37.117 kb on - strand at 37.119 kb on - strand at 37.124 kb on + strand at 37.124 kb on + strand at 37.124 kb on + strand at 37.124 kb on + strand at 37.149 kb on + strand at 37.149 kb on + strand at 37.160 kb on + strand at 37.190 kb on - strand, within IAI47_19030 at 37.190 kb on - strand, within IAI47_19030 at 37.235 kb on + strand, within IAI47_19030 at 37.237 kb on + strand, within IAI47_19030 at 37.286 kb on + strand, within IAI47_19030 at 37.286 kb on + strand, within IAI47_19030 at 37.287 kb on - strand, within IAI47_19030 at 37.287 kb on - strand, within IAI47_19030 at 37.417 kb on + strand at 37.418 kb on - strand at 37.418 kb on - strand at 37.418 kb on - strand at 37.418 kb on - strand at 37.447 kb on + strand at 37.447 kb on + strand at 37.447 kb on + strand at 37.448 kb on - strand at 37.480 kb on + strand at 37.480 kb on + strand at 37.480 kb on + strand at 37.482 kb on + strand at 37.482 kb on + strand at 37.483 kb on - strand at 37.483 kb on - strand at 37.512 kb on - strand at 37.525 kb on + strand at 37.629 kb on + strand at 37.629 kb on + strand at 37.648 kb on + strand at 37.649 kb on - strand at 37.651 kb on + strand at 37.652 kb on - strand at 37.708 kb on + strand at 37.709 kb on - strand at 37.778 kb on + strand at 37.778 kb on + strand at 37.779 kb on - strand at 37.861 kb on - strand, within IAI47_19035 at 37.924 kb on - strand, within IAI47_19035 at 38.005 kb on + strand, within IAI47_19035 at 38.019 kb on + strand, within IAI47_19035 at 38.123 kb on + strand at 38.155 kb on + strand at 38.201 kb on + strand at 38.210 kb on + strand at 38.211 kb on - strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.214 kb on + strand at 38.215 kb on - strand at 38.215 kb on - strand at 38.215 kb on - strand at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.278 kb on + strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.279 kb on - strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.281 kb on + strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.282 kb on - strand, within IAI47_19040 at 38.369 kb on + strand, within IAI47_19040 at 38.417 kb on + strand, within IAI47_19040 at 38.418 kb on - strand, within IAI47_19040 at 38.418 kb on - strand, within IAI47_19040 at 38.456 kb on + strand, within IAI47_19040 at 38.456 kb on + strand, within IAI47_19040 at 38.477 kb on + strand, within IAI47_19040 at 38.478 kb on - strand, within IAI47_19040 at 38.478 kb on - strand, within IAI47_19040 at 38.514 kb on + strand at 38.514 kb on + strand at 38.514 kb on + strand at 38.514 kb on + strand at 38.515 kb on - strand at 38.515 kb on - strand at 38.515 kb on - strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.518 kb on + strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.519 kb on - strand at 38.563 kb on + strand at 38.564 kb on - strand at 38.597 kb on - strand at 38.609 kb on + strand at 38.609 kb on + strand at 38.609 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.621 kb on + strand at 38.622 kb on - strand at 38.626 kb on - strand at 38.626 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.631 kb on - strand at 38.652 kb on + strand at 38.652 kb on + strand at 38.676 kb on + strand at 38.676 kb on + strand at 38.677 kb on - strand at 38.677 kb on - strand at 38.697 kb on - strand at 38.697 kb on - strand at 38.715 kb on + strand at 38.715 kb on + strand at 38.716 kb on - strand at 38.822 kb on - strand, within IAI47_19045 at 38.833 kb on + strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.834 kb on - strand, within IAI47_19045 at 38.896 kb on + strand, within IAI47_19045 at 38.910 kb on + strand, within IAI47_19045 at 38.921 kb on - strand, within IAI47_19045 at 38.926 kb on + strand, within IAI47_19045 at 39.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 36,828 - +0.5 36,828 - -0.3 36,906 + +1.8 36,941 + +0.2 36,942 - -0.1 36,957 + +1.1 36,957 + +0.2 36,968 + +0.8 36,977 - +0.1 36,978 + +0.8 36,978 + +0.3 36,979 - -0.8 36,984 - +0.2 37,015 + -0.0 37,015 + -1.2 37,015 + +0.3 37,015 + -0.2 37,015 + +0.8 37,016 - -0.8 37,018 + +0.1 37,018 + -0.2 37,032 - -0.4 37,034 - +0.0 37,037 + +0.1 37,037 + +1.4 37,038 - -0.6 37,038 - +0.5 37,062 - +1.7 37,063 + -1.4 37,064 - -0.2 37,103 + -0.2 37,116 + +1.8 37,116 + -1.8 37,116 + +2.1 37,117 - +2.1 37,119 - -2.5 37,124 + -0.1 37,124 + -0.3 37,124 + -0.2 37,124 + -1.3 37,149 + -0.9 37,149 + -0.5 37,160 + +0.4 37,190 - IAI47_19030 0.24 -0.8 37,190 - IAI47_19030 0.24 -0.2 37,235 + IAI47_19030 0.47 +0.0 37,237 + IAI47_19030 0.48 +1.0 37,286 + IAI47_19030 0.73 -1.0 37,286 + IAI47_19030 0.73 +1.1 37,287 - IAI47_19030 0.74 +0.2 37,287 - IAI47_19030 0.74 +0.5 37,417 + +0.7 37,418 - -0.1 37,418 - -0.6 37,418 - -0.0 37,418 - +0.5 37,447 + +0.8 37,447 + +0.8 37,447 + +0.8 37,448 - -0.2 37,480 + +0.2 37,480 + -0.5 37,480 + +0.8 37,482 + -1.0 37,482 + -1.2 37,483 - +0.1 37,483 - +0.8 37,512 - +0.1 37,525 + +0.4 37,629 + +1.2 37,629 + -0.9 37,648 + +0.8 37,649 - -1.5 37,651 + -0.3 37,652 - -0.5 37,708 + -0.9 37,709 - +0.5 37,778 + +1.2 37,778 + +1.2 37,779 - +0.5 37,861 - IAI47_19035 0.20 +3.1 37,924 - IAI47_19035 0.45 +0.4 38,005 + IAI47_19035 0.76 -0.9 38,019 + IAI47_19035 0.82 +1.6 38,123 + +1.0 38,155 + -3.2 38,201 + +0.4 38,210 + -0.2 38,211 - +0.2 38,214 + -0.2 38,214 + +0.2 38,214 + -0.5 38,214 + +1.2 38,214 + +0.8 38,215 - -1.7 38,215 - +0.4 38,215 - +0.1 38,278 + IAI47_19040 0.18 -0.4 38,278 + IAI47_19040 0.18 +0.8 38,278 + IAI47_19040 0.18 +0.8 38,278 + IAI47_19040 0.18 +0.1 38,278 + IAI47_19040 0.18 +0.5 38,279 - IAI47_19040 0.18 +0.2 38,279 - IAI47_19040 0.18 -0.2 38,279 - IAI47_19040 0.18 -1.3 38,279 - IAI47_19040 0.18 -0.2 38,279 - IAI47_19040 0.18 -1.4 38,279 - IAI47_19040 0.18 +0.2 38,279 - IAI47_19040 0.18 -1.0 38,281 + IAI47_19040 0.19 -0.4 38,281 + IAI47_19040 0.19 -0.2 38,281 + IAI47_19040 0.19 -1.0 38,282 - IAI47_19040 0.19 +0.4 38,282 - IAI47_19040 0.19 +0.3 38,282 - IAI47_19040 0.19 +0.2 38,282 - IAI47_19040 0.19 -1.1 38,369 + IAI47_19040 0.49 +2.4 38,417 + IAI47_19040 0.65 -0.4 38,418 - IAI47_19040 0.66 -2.0 38,418 - IAI47_19040 0.66 -0.6 38,456 + IAI47_19040 0.79 -0.8 38,456 + IAI47_19040 0.79 +0.1 38,477 + IAI47_19040 0.86 +1.2 38,478 - IAI47_19040 0.86 -0.2 38,478 - IAI47_19040 0.86 -1.4 38,514 + +0.2 38,514 + -1.3 38,514 + +0.1 38,514 + -0.0 38,515 - +1.0 38,515 - -0.3 38,515 - +0.8 38,518 + -2.4 38,518 + +1.7 38,518 + +1.0 38,518 + -1.4 38,518 + +0.8 38,519 - +0.2 38,519 - -1.7 38,519 - -0.5 38,563 + -2.7 38,564 - -0.6 38,597 - +0.1 38,609 + +2.6 38,609 + -0.2 38,609 + +0.2 38,621 + -0.6 38,621 + +0.1 38,621 + -0.5 38,621 + -0.2 38,622 - +0.7 38,626 - +0.1 38,626 - +0.2 38,631 - +0.0 38,631 - +0.2 38,631 - +0.3 38,631 - +1.3 38,652 + -1.0 38,652 + +0.8 38,676 + -1.5 38,676 + -0.1 38,677 - -0.2 38,677 - +0.4 38,697 - +0.8 38,697 - +0.2 38,715 + +0.2 38,715 + -2.0 38,716 - +0.5 38,822 - IAI47_19045 0.44 +1.2 38,833 + IAI47_19045 0.48 +1.4 38,834 - IAI47_19045 0.49 -0.3 38,834 - IAI47_19045 0.49 -0.7 38,834 - IAI47_19045 0.49 +0.0 38,896 + IAI47_19045 0.74 -0.8 38,910 + IAI47_19045 0.80 +0.5 38,921 - IAI47_19045 0.84 -1.4 38,926 + IAI47_19045 0.86 +3.4 39,030 + +0.8
Or see this region's nucleotide sequence