Strain Fitness in Pantoea sp. MT58 around IAI47_15645

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
3,298,813	+				+0.6
3,298,813	+				+1.4
3,298,868	+				-0.5
3,298,868	+				+1.1
3,298,868	+				+0.2
3,298,868	+				-0.4
3,298,869	-				+0.5
3,298,869	-				-0.3
3,298,869	-				-0.3
3,298,869	-				-2.0
3,298,869	-				+0.8
3,298,869	-				+0.8
3,298,884	-				+0.8
3,298,884	-				-1.2
3,298,934	+				+1.2
3,298,934	+				-0.6
3,298,934	+				+0.2
3,298,953	+				+0.3
3,298,953	+				+3.0
3,298,953	+				-0.2
3,298,954	-				-0.8
3,298,991	-		IAI47_15640	0.14	+0.0
3,298,991	-		IAI47_15640	0.14	-0.2
3,299,003	+		IAI47_15640	0.15	+0.5
3,299,003	+		IAI47_15640	0.15	-0.8
3,299,003	+		IAI47_15640	0.15	+1.1
3,299,004	-		IAI47_15640	0.15	+0.5
3,299,004	-		IAI47_15640	0.15	-1.2
3,299,023	+		IAI47_15640	0.18	-1.3
3,299,024	-		IAI47_15640	0.18	+0.1
3,299,024	-		IAI47_15640	0.18	+0.4
3,299,042	+		IAI47_15640	0.20	+2.3
3,299,043	-		IAI47_15640	0.20	-1.0
3,299,043	-		IAI47_15640	0.20	+0.6
3,299,064	+		IAI47_15640	0.22	+1.8
3,299,064	+		IAI47_15640	0.22	-0.1
3,299,065	-		IAI47_15640	0.22	-1.2
3,299,065	-		IAI47_15640	0.22	+0.4
3,299,071	+		IAI47_15640	0.23	-0.3
3,299,160	+		IAI47_15640	0.33	+0.5
3,299,160	+		IAI47_15640	0.33	+0.3
3,299,161	-		IAI47_15640	0.33	-1.0
3,299,161	-		IAI47_15640	0.33	-0.2
3,299,161	-		IAI47_15640	0.33	-1.6
3,299,208	+		IAI47_15640	0.39	+1.2
3,299,208	+		IAI47_15640	0.39	+0.8
3,299,208	+		IAI47_15640	0.39	+0.6
3,299,208	+		IAI47_15640	0.39	-0.9
3,299,208	+		IAI47_15640	0.39	+0.3
3,299,208	+		IAI47_15640	0.39	-0.2
3,299,208	+		IAI47_15640	0.39	+0.0
3,299,209	-		IAI47_15640	0.39	-1.3
3,299,209	-		IAI47_15640	0.39	+0.8
3,299,209	-		IAI47_15640	0.39	+0.2
3,299,209	-		IAI47_15640	0.39	+0.8
3,299,209	-		IAI47_15640	0.39	+0.1
3,299,209	-		IAI47_15640	0.39	+0.8
3,299,209	-		IAI47_15640	0.39	+0.1
3,299,217	+		IAI47_15640	0.40	+1.0
3,299,218	-		IAI47_15640	0.40	+0.8
3,299,218	-		IAI47_15640	0.40	+1.8
3,299,257	+		IAI47_15640	0.44	-0.4
3,299,258	-		IAI47_15640	0.44	+1.4
3,299,348	+		IAI47_15640	0.54	-0.1
3,299,349	-		IAI47_15640	0.55	+0.4
3,299,349	-		IAI47_15640	0.55	+0.3
3,299,379	+		IAI47_15640	0.58	+0.8
3,299,379	+		IAI47_15640	0.58	+0.3
3,299,379	+		IAI47_15640	0.58	+0.3
3,299,379	+		IAI47_15640	0.58	-0.6
3,299,380	-		IAI47_15640	0.58	+0.0
3,299,381	+		IAI47_15640	0.58	-0.9
3,299,382	-		IAI47_15640	0.58	-2.0
3,299,382	-		IAI47_15640	0.58	+0.1
3,299,447	+		IAI47_15640	0.66	+0.7
3,299,447	+		IAI47_15640	0.66	-0.4
3,299,447	+		IAI47_15640	0.66	+1.9
3,299,448	-		IAI47_15640	0.66	-0.2
3,299,462	-		IAI47_15640	0.67	+1.4
3,299,479	-		IAI47_15640	0.69	-1.8
3,299,512	+		IAI47_15640	0.73	-1.0
3,299,512	+		IAI47_15640	0.73	-0.7
3,299,512	+		IAI47_15640	0.73	+0.0
3,299,512	+		IAI47_15640	0.73	+0.1
3,299,512	+		IAI47_15640	0.73	+1.4
3,299,512	+		IAI47_15640	0.73	-0.2
3,299,531	+		IAI47_15640	0.75	-0.8
3,299,531	+		IAI47_15640	0.75	-1.3
3,299,546	+		IAI47_15640	0.77	+0.0
3,299,546	+		IAI47_15640	0.77	+0.0
3,299,547	-		IAI47_15640	0.77	+0.6
3,299,547	-		IAI47_15640	0.77	-1.5
3,299,547	-		IAI47_15640	0.77	+0.6
3,299,547	-		IAI47_15640	0.77	-1.2
3,299,551	+		IAI47_15640	0.78	+1.8
3,299,551	+		IAI47_15640	0.78	+0.2
3,299,551	+		IAI47_15640	0.78	+0.1
3,299,551	+		IAI47_15640	0.78	-1.8
3,299,551	+		IAI47_15640	0.78	+1.6
3,299,552	-		IAI47_15640	0.78	-0.0
3,299,659	+		IAI47_15640	0.90	-0.2
3,299,659	+		IAI47_15640	0.90	+0.4
3,299,659	+		IAI47_15640	0.90	+1.5
3,299,659	+		IAI47_15640	0.90	+0.1
3,299,660	-				+1.1
3,299,660	-				+0.1
3,299,703	-				-0.3
3,299,745	+				-0.0
3,299,745	+				+1.1
3,299,746	-				-0.2
3,299,746	-				-1.2
3,299,746	-				+0.3
3,299,746	-				+0.6
3,299,746	-				+1.0
3,299,780	+				-2.2
3,299,780	+				-0.2
3,299,780	+				+0.5
3,299,780	+				-0.2
3,299,781	-				-2.2
3,299,781	-				+0.8
3,299,781	-				-0.2
3,299,781	-				-0.7
3,299,781	-				+1.4
3,299,787	-				+0.8
3,299,800	-				-1.5
3,299,800	-				-1.6
3,299,803	+				-0.2
3,299,803	+				-1.0
3,299,804	-				+0.1
3,299,810	+				-1.2
3,299,810	+				-1.2
3,299,810	+				-2.3
3,299,847	+				-2.3
3,299,847	+				-0.6
3,299,947	+				-0.8
3,299,947	+				-2.5
3,299,947	+				-1.9
3,299,959	+		IAI47_15645	0.10	-0.4
3,299,993	+		IAI47_15645	0.12	-1.3
3,300,014	+		IAI47_15645	0.14	-1.3
3,300,014	+		IAI47_15645	0.14	-1.2
3,300,014	+		IAI47_15645	0.14	-0.8
3,300,023	+		IAI47_15645	0.15	-0.0
3,300,023	+		IAI47_15645	0.15	-2.2
3,300,054	+		IAI47_15645	0.17	-2.9
3,300,115	+		IAI47_15645	0.21	-2.8
3,300,115	+		IAI47_15645	0.21	-2.1
3,300,244	+		IAI47_15645	0.30	-2.3
3,300,286	+		IAI47_15645	0.33	-1.0
3,300,289	+		IAI47_15645	0.33	-0.8
3,300,301	+		IAI47_15645	0.34	-1.6
3,300,347	+		IAI47_15645	0.37	-1.2
3,300,347	+		IAI47_15645	0.37	-1.8
3,300,347	+		IAI47_15645	0.37	-2.2
3,300,347	+		IAI47_15645	0.37	-2.0
3,300,347	+		IAI47_15645	0.37	+0.2
3,300,347	+		IAI47_15645	0.37	+0.8
3,300,350	+		IAI47_15645	0.37	-2.2
3,300,350	+		IAI47_15645	0.37	-1.8
3,300,350	+		IAI47_15645	0.37	-0.8
3,300,350	+		IAI47_15645	0.37	-1.8
3,300,380	+		IAI47_15645	0.39	-1.2
3,300,380	+		IAI47_15645	0.39	+0.2
3,300,380	+		IAI47_15645	0.39	+1.4
3,300,502	+		IAI47_15645	0.48	-2.6
3,300,502	+		IAI47_15645	0.48	+0.8
3,300,508	+		IAI47_15645	0.48	-2.2
3,300,508	+		IAI47_15645	0.48	-0.8
3,300,508	+		IAI47_15645	0.48	-2.5
3,300,508	+		IAI47_15645	0.48	-1.2
3,300,508	+		IAI47_15645	0.48	+0.8
3,300,555	+		IAI47_15645	0.52	-1.5
3,300,555	+		IAI47_15645	0.52	-1.8
3,300,620	+		IAI47_15645	0.56	+0.8
3,300,629	+		IAI47_15645	0.57	-1.2
3,300,629	+		IAI47_15645	0.57	-0.8
3,300,629	+		IAI47_15645	0.57	-1.8
3,300,635	-		IAI47_15645	0.57	-1.2
3,300,647	+		IAI47_15645	0.58	-2.1
3,300,647	+		IAI47_15645	0.58	-0.5
3,300,769	+		IAI47_15645	0.66	-1.5
3,300,769	+		IAI47_15645	0.66	-1.3
3,300,863	+		IAI47_15645	0.73	-2.8
3,300,895	+		IAI47_15645	0.75	-2.3
3,300,937	+		IAI47_15645	0.78	-1.8
3,300,937	+		IAI47_15645	0.78	-2.6
3,300,937	+		IAI47_15645	0.78	-2.0
3,300,940	+		IAI47_15645	0.78	-1.5
3,300,940	+		IAI47_15645	0.78	-2.6
3,300,949	+		IAI47_15645	0.79	+0.2
3,300,975	+		IAI47_15645	0.81	-0.6
3,300,975	+		IAI47_15645	0.81	-2.9
3,300,975	+		IAI47_15645	0.81	+1.8
3,300,975	+		IAI47_15645	0.81	-0.8
3,300,975	+		IAI47_15645	0.81	-2.2
3,301,043	+		IAI47_15645	0.85	+0.8
3,301,043	+		IAI47_15645	0.85	-1.8
3,301,043	+		IAI47_15645	0.85	+1.8
3,301,078	+		IAI47_15645	0.88	-0.9
3,301,078	+		IAI47_15645	0.88	+0.1
3,301,078	+		IAI47_15645	0.88	-1.2
3,301,159	+				-0.2
3,301,189	+				-0.2
3,301,189	+				+1.6
3,301,773	+				-2.2
3,301,781	-				-0.8
3,301,781	-				+0.1
3,301,890	+				+0.0
3,301,890	+				-0.0
3,301,928	+		IAI47_15655	0.14	-1.0
3,301,928	+		IAI47_15655	0.14	-0.9
3,301,928	+		IAI47_15655	0.14	-2.0
3,301,928	+		IAI47_15655	0.14	-0.2
3,301,929	-		IAI47_15655	0.14	-2.0
3,301,929	-		IAI47_15655	0.14	-0.8
3,301,929	-		IAI47_15655	0.14	-0.5
3,301,929	-		IAI47_15655	0.14	-0.6
3,302,016	+		IAI47_15655	0.25	+0.5
3,302,016	+		IAI47_15655	0.25	+1.2
3,302,016	+		IAI47_15655	0.25	-1.6
3,302,017	-		IAI47_15655	0.25	-1.8
3,302,017	-		IAI47_15655	0.25	-1.3
3,302,033	-		IAI47_15655	0.27	-0.3
3,302,078	+		IAI47_15655	0.33	+0.7
3,302,078	+		IAI47_15655	0.33	+0.3
3,302,078	+		IAI47_15655	0.33	-2.9
3,302,078	+		IAI47_15655	0.33	+0.2
3,302,078	+		IAI47_15655	0.33	+0.4
3,302,078	+		IAI47_15655	0.33	+0.1
3,302,078	+		IAI47_15655	0.33	+0.6
3,302,078	+		IAI47_15655	0.33	+0.5
3,302,079	-		IAI47_15655	0.33	+0.2
3,302,079	-		IAI47_15655	0.33	+1.8
3,302,085	+		IAI47_15655	0.34	+0.1
3,302,085	+		IAI47_15655	0.34	+1.1
3,302,085	+		IAI47_15655	0.34	-0.7
3,302,085	+		IAI47_15655	0.34	-0.6
3,302,085	+		IAI47_15655	0.34	-0.5
3,302,085	+		IAI47_15655	0.34	+0.0
3,302,085	+		IAI47_15655	0.34	-2.2
3,302,086	-		IAI47_15655	0.34	+0.2
3,302,086	-		IAI47_15655	0.34	-0.2
3,302,086	-		IAI47_15655	0.34	+0.2
3,302,086	-		IAI47_15655	0.34	-0.2
3,302,144	+		IAI47_15655	0.41	+1.3
3,302,145	-		IAI47_15655	0.41	+0.8
3,302,145	-		IAI47_15655	0.41	-1.0
3,302,145	-		IAI47_15655	0.41	-0.3