Strain Fitness in Pantoea sp. MT58 around IAI47_12795

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,698,383	-		IAI47_12790	0.13	-2.8
2,700,344	-				-0.0
2,700,364	-				+0.7
2,700,364	-				-0.8
2,700,364	-				+1.5
2,700,364	-				+0.0
2,700,364	-				+1.7
2,700,364	-				-0.5
2,700,364	-				+0.6
2,700,364	-				-1.4
2,700,419	-		IAI47_12800	0.13	-0.0
2,700,463	-		IAI47_12800	0.19	+0.2
2,700,463	-		IAI47_12800	0.19	-1.9
2,700,463	-		IAI47_12800	0.19	-2.0
2,700,463	-		IAI47_12800	0.19	+0.3
2,700,463	-		IAI47_12800	0.19	-0.2
2,700,463	-		IAI47_12800	0.19	-0.1
2,700,624	-		IAI47_12800	0.39	+0.8
2,700,624	-		IAI47_12800	0.39	+0.3
2,700,624	-		IAI47_12800	0.39	-0.6
2,700,756	-		IAI47_12800	0.56	-1.2
2,700,802	+		IAI47_12800	0.62	+1.8
2,700,803	-		IAI47_12800	0.62	-0.0
2,700,866	+		IAI47_12800	0.70	-2.1
2,700,866	+		IAI47_12800	0.70	-0.8
2,700,866	+		IAI47_12800	0.70	+1.4
2,700,867	-		IAI47_12800	0.70	-1.5
2,701,028	+				+0.2
2,701,029	-				-0.8
2,701,051	-				-2.4
2,701,051	-				-0.2
2,701,055	-				-0.2
2,701,091	-				+0.1
2,701,117	+				-0.1
2,701,118	-				-1.2
2,701,118	-				-1.8
2,701,139	+				-0.2
2,701,139	+				-0.0
2,701,139	+				+0.6
2,701,139	+				+1.2
2,701,140	-				-1.0
2,701,140	-				-2.2
2,701,140	-				-0.3
2,701,200	+				-0.5
2,701,201	-				-2.0
2,701,232	+				-0.6
2,701,232	+				-0.2
2,701,232	+				-2.3
2,701,232	+				+0.8
2,701,233	-				+0.8
2,701,233	-				-0.1
2,701,233	-				+0.4
2,701,233	-				+0.1
2,701,233	-				-0.8
2,701,237	-				-0.1
2,701,237	-				+1.4
2,701,237	-				-0.9
2,701,237	-				-0.2
2,701,268	+				-1.7
2,701,268	+				-1.4
2,701,268	+				+0.4
2,701,306	-				+0.1
2,701,311	-		IAI47_12805	0.11	+0.1