Strain Fitness in Pantoea sp. MT58 around IAI47_12785

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,692,899	+		IAI47_12780	0.58	-2.0
2,693,051	+		IAI47_12780	0.66	-0.5
2,693,051	+		IAI47_12780	0.66	+1.4
2,693,086	+		IAI47_12780	0.68	-0.0
2,693,086	+		IAI47_12780	0.68	-0.9
2,693,106	+		IAI47_12780	0.69	+1.8
2,693,106	+		IAI47_12780	0.69	-0.2
2,693,107	-		IAI47_12780	0.69	+0.5
2,693,107	-		IAI47_12780	0.69	-0.0
2,693,117	+		IAI47_12780	0.70	+0.8
2,693,117	+		IAI47_12780	0.70	+0.2
2,693,118	-		IAI47_12780	0.70	-0.2
2,693,118	-		IAI47_12780	0.70	+1.0
2,693,118	-		IAI47_12780	0.70	+0.1
2,693,118	-		IAI47_12780	0.70	-0.8
2,693,194	+		IAI47_12780	0.74	-0.8
2,693,194	+		IAI47_12780	0.74	-0.2
2,693,194	+		IAI47_12780	0.74	-0.2
2,693,209	+		IAI47_12780	0.75	-0.1
2,693,210	-		IAI47_12780	0.75	+0.1
2,693,210	-		IAI47_12780	0.75	-0.9
2,693,258	-		IAI47_12780	0.78	-1.2
2,693,429	+		IAI47_12780	0.87	-1.5
2,693,429	+		IAI47_12780	0.87	+0.9
2,693,429	+		IAI47_12780	0.87	-0.8
2,693,429	+		IAI47_12780	0.87	-1.2
2,693,430	-		IAI47_12780	0.87	-1.0
2,693,430	-		IAI47_12780	0.87	-1.5
2,693,430	-		IAI47_12780	0.87	+0.2
2,693,430	-		IAI47_12780	0.87	+0.3
2,693,430	-		IAI47_12780	0.87	-0.3
2,693,430	-		IAI47_12780	0.87	-0.2
2,693,430	-		IAI47_12780	0.87	-0.5
2,693,430	-		IAI47_12780	0.87	+1.8
2,693,430	-		IAI47_12780	0.87	+0.5
2,693,430	-		IAI47_12780	0.87	-1.8
2,693,443	+		IAI47_12780	0.88	-1.5
2,693,443	+		IAI47_12780	0.88	-0.9
2,693,443	+		IAI47_12780	0.88	+0.6
2,693,444	-		IAI47_12780	0.88	+0.8
2,693,444	-		IAI47_12780	0.88	-0.7
2,693,468	-		IAI47_12780	0.89	-0.4
2,693,543	+				-1.2
2,693,543	+				+1.3
2,693,543	+				+1.0
2,693,543	+				+1.0
2,693,544	-				-0.2
2,693,544	-				+0.6
2,693,622	+				+0.5
2,693,622	+				+0.8
2,693,622	+				+0.4
2,693,622	+				-0.6
2,693,623	-				-0.0
2,693,623	-				-1.5
2,693,623	-				-0.8
2,693,623	-				+1.3
2,693,673	-				+0.8
2,693,700	-				-0.1
2,693,735	+				+0.2
2,693,735	+				-0.8
2,693,735	+				+1.0
2,693,735	+				-0.1
2,693,735	+				-1.4
2,693,736	-				+0.6
2,693,737	+				+1.2
2,693,737	+				+1.2
2,693,737	+				+0.2
2,693,737	+				-0.1
2,693,738	-				+0.8
2,693,738	-				-0.8
2,693,738	-				-0.5
2,693,738	-				-0.4
2,693,738	-				-0.1
2,693,738	-				+0.5
2,693,738	-				+0.3
2,693,738	-				+0.5
2,693,786	+				+0.4
2,693,809	+				+0.5
2,693,838	+				-0.3
2,698,383	-		IAI47_12790	0.13	-2.8