Strain Fitness in Pantoea sp. MT58 around IAI47_10945

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,309,803	-		IAI47_10935	0.52	-0.1
2,309,803	-		IAI47_10935	0.52	-0.6
2,309,808	-		IAI47_10935	0.53	-1.0
2,309,837	+		IAI47_10935	0.57	-2.1
2,309,837	+		IAI47_10935	0.57	-1.3
2,309,838	-				-0.1
2,309,886	+		IAI47_10935	0.63	+1.2
2,309,886	+		IAI47_10935	0.63	+0.7
2,309,886	+		IAI47_10935	0.63	+0.7
2,309,887	-		IAI47_10935	0.63	+0.7
2,309,887	-		IAI47_10935	0.63	-0.5
2,309,890	+		IAI47_10935	0.64	-1.6
2,309,890	+		IAI47_10935	0.64	+0.5
2,309,890	+		IAI47_10935	0.64	-0.3
2,309,891	-		IAI47_10935	0.64	+1.7
2,310,042	+		IAI47_10935	0.84	+0.3
2,310,042	+		IAI47_10935	0.84	+0.2
2,310,042	+		IAI47_10935	0.84	-0.3
2,310,042	+		IAI47_10935	0.84	-1.7
2,310,042	+		IAI47_10935	0.84	+0.1
2,310,042	+		IAI47_10935	0.84	-0.4
2,310,043	-		IAI47_10935	0.84	+0.3
2,310,043	-		IAI47_10935	0.84	-0.5
2,310,043	-		IAI47_10935	0.84	+0.8
2,310,043	-		IAI47_10935	0.84	-0.5
2,310,053	+		IAI47_10935	0.85	-0.6
2,310,053	+		IAI47_10935	0.85	+1.7
2,310,153	+				+0.1
2,310,154	-				-0.8
2,310,154	-				-1.3
2,310,154	-				+0.5
2,310,163	+				+1.2
2,310,163	+				-0.3
2,310,164	-				-0.5
2,310,164	-				+0.5
2,310,164	-				-0.8
2,310,164	-				-0.7
2,310,182	+				+0.2
2,310,218	+		IAI47_10940	0.10	+0.9
2,310,218	+		IAI47_10940	0.10	-0.3
2,310,218	+		IAI47_10940	0.10	-1.1
2,310,218	+		IAI47_10940	0.10	+1.4
2,310,219	-		IAI47_10940	0.10	+0.2
2,310,219	-		IAI47_10940	0.10	+0.9
2,310,219	-		IAI47_10940	0.10	+0.6
2,310,317	+		IAI47_10940	0.28	-2.1
2,310,317	+		IAI47_10940	0.28	-1.0
2,310,317	+		IAI47_10940	0.28	-1.1
2,310,318	-		IAI47_10940	0.29	+0.0
2,310,327	-		IAI47_10940	0.30	-1.0
2,310,327	-		IAI47_10940	0.30	-0.1
2,310,391	+		IAI47_10940	0.42	+1.3
2,310,391	+		IAI47_10940	0.42	-0.6
2,310,391	+		IAI47_10940	0.42	+0.5
2,310,392	-		IAI47_10940	0.42	-0.8
2,310,392	-		IAI47_10940	0.42	-1.6
2,310,454	+		IAI47_10940	0.53	+1.4
2,310,454	+		IAI47_10940	0.53	-1.8
2,310,454	+		IAI47_10940	0.53	+0.3
2,310,454	+		IAI47_10940	0.53	+0.0
2,310,454	+		IAI47_10940	0.53	+0.6
2,310,454	+		IAI47_10940	0.53	-0.8
2,310,455	-		IAI47_10940	0.54	-0.3
2,310,455	-		IAI47_10940	0.54	-0.3
2,310,455	-		IAI47_10940	0.54	+1.5
2,310,455	-		IAI47_10940	0.54	-0.8
2,310,455	-		IAI47_10940	0.54	+1.2
2,310,455	-		IAI47_10940	0.54	-1.8
2,310,535	-		IAI47_10940	0.68	-0.5
2,310,586	+		IAI47_10940	0.78	+1.6
2,310,587	-		IAI47_10940	0.78	-0.3
2,310,587	-		IAI47_10940	0.78	+0.7
2,310,608	+		IAI47_10940	0.82	-0.7
2,310,608	+		IAI47_10940	0.82	+1.3
2,310,608	+		IAI47_10940	0.82	+0.3
2,310,609	-		IAI47_10940	0.82	-1.6
2,310,609	-		IAI47_10940	0.82	-1.0
2,310,609	-		IAI47_10940	0.82	+1.3
2,310,609	-		IAI47_10940	0.82	+0.0
2,310,680	+				-2.4
2,310,680	+				-2.3
2,310,697	+				-1.6
2,310,697	+				-1.4
2,310,698	-				-0.6
2,310,698	-				-0.6
2,310,698	-				+1.7
2,310,698	-				+0.3
2,310,710	+				+1.3
2,310,711	-				-0.6
2,310,711	-				+0.6
2,310,714	+				+1.6
2,310,758	+				-0.3
2,310,778	+				-1.5
2,310,824	-				+0.4
2,310,824	-				-0.1
2,310,824	-				+0.3
2,310,824	-				+0.0
2,310,824	-				-0.3
2,311,005	+		IAI47_10945	0.25	+0.2
2,311,006	-		IAI47_10945	0.25	+2.1
2,311,041	+		IAI47_10945	0.29	-0.1
2,311,049	+		IAI47_10945	0.30	+1.4
2,311,050	-		IAI47_10945	0.30	+0.2
2,311,208	+		IAI47_10945	0.46	-1.3
2,311,208	+		IAI47_10945	0.46	-0.8
2,311,208	+		IAI47_10945	0.46	-0.5
2,311,209	-		IAI47_10945	0.46	-0.9
2,311,209	-		IAI47_10945	0.46	-0.0
2,311,244	+		IAI47_10945	0.49	-0.8
2,311,245	-		IAI47_10945	0.50	+0.2
2,311,356	+		IAI47_10945	0.61	-0.6
2,311,356	+		IAI47_10945	0.61	-1.8
2,311,356	+		IAI47_10945	0.61	+0.7
2,311,517	-		IAI47_10945	0.77	-0.5
2,311,668	+				+1.1
2,311,668	+				-1.5
2,311,668	+				+0.4
2,311,669	-				-0.5
2,311,669	-				-0.1
2,311,669	-				-1.8
2,311,740	+				-0.1
2,311,740	+				+0.3
2,311,740	+				-0.4
2,311,741	-				-1.8
2,311,741	-				+0.2
2,311,741	-				+0.1
2,311,741	-				-0.5
2,311,741	-				+0.6
2,311,750	+				-3.0
2,311,750	+				-0.0
2,311,751	-				-0.7
2,311,751	-				-0.3
2,311,751	-				-0.8
2,311,776	+				+0.2
2,311,776	+				+0.7
2,311,776	+				+0.4
2,311,777	-				-2.4
2,311,838	+				+0.1
2,311,950	-		IAI47_10950	0.10	+0.4