Strain Fitness in Pantoea sp. MT58 around IAI47_06760

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
1,409,528	+		IAI47_06755	0.59	+0.8
1,409,546	+		IAI47_06755	0.60	+0.6
1,409,546	+		IAI47_06755	0.60	-0.6
1,409,546	+		IAI47_06755	0.60	+0.4
1,409,546	+		IAI47_06755	0.60	-1.0
1,409,546	+		IAI47_06755	0.60	-1.8
1,409,546	+		IAI47_06755	0.60	-1.7
1,409,546	+		IAI47_06755	0.60	-0.4
1,409,546	+		IAI47_06755	0.60	-1.5
1,409,547	-		IAI47_06755	0.60	+0.8
1,409,547	-		IAI47_06755	0.60	+0.5
1,409,547	-		IAI47_06755	0.60	-1.5
1,409,547	-		IAI47_06755	0.60	+0.8
1,409,547	-		IAI47_06755	0.60	+0.6
1,409,547	-		IAI47_06755	0.60	-0.4
1,409,547	-		IAI47_06755	0.60	+0.3
1,409,547	-		IAI47_06755	0.60	+0.8
1,409,551	+		IAI47_06755	0.61	+0.6
1,409,551	+		IAI47_06755	0.61	+0.2
1,409,552	-		IAI47_06755	0.61	-0.5
1,409,552	-		IAI47_06755	0.61	-1.0
1,409,552	-		IAI47_06755	0.61	-0.5
1,409,552	-		IAI47_06755	0.61	-0.8
1,409,552	-		IAI47_06755	0.61	+0.2
1,409,552	-		IAI47_06755	0.61	+0.8
1,409,552	-		IAI47_06755	0.61	-3.1
1,409,567	+		IAI47_06755	0.62	+1.1
1,409,568	-		IAI47_06755	0.62	+1.1
1,409,591	-		IAI47_06755	0.63	-0.2
1,409,591	-		IAI47_06755	0.63	-0.3
1,409,591	-		IAI47_06755	0.63	+1.2
1,409,653	+		IAI47_06755	0.67	+0.2
1,409,654	-		IAI47_06755	0.67	+1.2
1,409,683	+		IAI47_06755	0.68	+0.0
1,409,683	+		IAI47_06755	0.68	-0.6
1,409,684	-		IAI47_06755	0.68	-0.2
1,409,684	-		IAI47_06755	0.68	+0.0
1,409,684	-		IAI47_06755	0.68	+0.5
1,409,697	-		IAI47_06755	0.69	-0.3
1,409,697	-		IAI47_06755	0.69	+1.8
1,409,747	+		IAI47_06755	0.72	-0.4
1,409,748	-		IAI47_06755	0.72	-1.8
1,409,748	-		IAI47_06755	0.72	-0.5
1,409,748	-		IAI47_06755	0.72	-0.3
1,409,748	-		IAI47_06755	0.72	-1.2
1,409,807	+		IAI47_06755	0.76	+1.4
1,409,807	+		IAI47_06755	0.76	-0.8
1,409,807	+		IAI47_06755	0.76	-0.4
1,409,807	+		IAI47_06755	0.76	-1.2
1,409,807	+		IAI47_06755	0.76	-1.5
1,409,807	+		IAI47_06755	0.76	-1.2
1,409,808	-		IAI47_06755	0.76	-1.7
1,409,808	-		IAI47_06755	0.76	-0.4
1,409,808	-		IAI47_06755	0.76	+0.2
1,409,808	-		IAI47_06755	0.76	+0.2
1,409,808	-		IAI47_06755	0.76	-1.4
1,409,908	+		IAI47_06755	0.82	-0.2
1,409,908	+		IAI47_06755	0.82	+1.1
1,409,912	+		IAI47_06755	0.82	+0.5
1,409,913	-		IAI47_06755	0.82	+0.2
1,409,913	-		IAI47_06755	0.82	+1.6
1,409,913	-		IAI47_06755	0.82	-1.2
1,409,913	-		IAI47_06755	0.82	-1.5
1,409,992	+		IAI47_06755	0.87	-1.2
1,409,993	-		IAI47_06755	0.87	+1.5
1,409,993	-		IAI47_06755	0.87	+0.8
1,409,993	-		IAI47_06755	0.87	-0.2
1,410,002	+		IAI47_06755	0.87	-0.2
1,410,002	+		IAI47_06755	0.87	+1.2
1,410,002	+		IAI47_06755	0.87	+0.6
1,410,002	+		IAI47_06755	0.87	+1.1
1,410,003	-		IAI47_06755	0.87	+1.5
1,410,003	-		IAI47_06755	0.87	+0.8
1,410,008	+		IAI47_06755	0.88	-0.5
1,410,009	-		IAI47_06755	0.88	-0.5
1,410,009	-		IAI47_06755	0.88	-0.5
1,410,069	+				-2.0
1,410,069	+				-1.5
1,410,070	-				-0.2
1,410,107	+				-0.8
1,410,107	+				-0.6
1,410,141	+				+0.5
1,410,141	+				-1.2
1,410,142	-				-0.7
1,410,142	-				+0.5
1,410,176	-				-0.2
1,410,176	-				+1.5
1,410,182	+				-2.4
1,410,183	-				+0.1
1,410,183	-				+0.5
1,410,184	+				+1.2
1,410,184	+				+2.8
1,410,184	+				-1.0
1,410,184	+				-1.6
1,410,184	+				-0.1
1,410,184	+				+0.0
1,410,184	+				+0.7
1,410,184	+				+0.8
1,410,185	-				-1.5
1,410,185	-				+0.5
1,410,185	-				-2.4
1,410,185	-				+1.4
1,410,185	-				+0.6
1,410,185	-				-0.4
1,410,185	-				+0.8
1,410,185	-				-1.1
1,410,185	-				+1.8
1,410,185	-				-0.8
1,410,185	-				-2.9
1,410,185	-				-2.0
1,410,185	-				-1.3
1,410,185	-				-0.6
1,410,185	-				-0.1
1,410,185	-				+0.8
1,410,198	-				-2.0
1,410,198	-				+1.8
1,410,266	+				-0.5
1,410,290	+				+0.3
1,410,290	+				-1.5
1,410,290	+				-1.0
1,410,290	+				-0.9
1,410,290	+				+0.8
1,410,290	+				+0.6
1,410,291	-				+0.6
1,410,291	-				+0.2
1,410,291	-				+0.5
1,410,291	-				+0.8
1,410,372	+				+0.6
1,410,381	+				+0.8
1,410,382	-				-0.4
1,410,417	-				+0.2
1,410,436	+				+0.8
1,410,437	-				+0.6
1,410,451	+				+0.2
1,410,452	-				-0.8
1,410,452	-				+1.6
1,410,489	+				+1.4
1,410,490	-				-0.6
1,410,498	+				-1.9
1,410,498	+				+0.0
1,410,498	+				+0.9
1,410,498	+				+0.7
1,410,499	-				-0.4
1,410,569	+				-0.4
1,410,584	+		IAI47_06760	0.11	+0.1
1,410,594	-		IAI47_06760	0.12	-0.1
1,410,594	-		IAI47_06760	0.12	+1.2
1,410,594	-		IAI47_06760	0.12	-0.3
1,410,700	-		IAI47_06760	0.24	+0.8
1,410,762	+		IAI47_06760	0.31	+2.1
1,410,762	+		IAI47_06760	0.31	-0.4
1,410,762	+		IAI47_06760	0.31	+1.7
1,410,762	+		IAI47_06760	0.31	+1.3
1,410,762	+		IAI47_06760	0.31	+0.3
1,410,763	-		IAI47_06760	0.31	+0.6
1,410,763	-		IAI47_06760	0.31	+0.4
1,410,803	+		IAI47_06760	0.35	-0.8
1,410,804	-		IAI47_06760	0.35	-0.0
1,410,828	+		IAI47_06760	0.38	+0.8
1,410,828	+		IAI47_06760	0.38	-0.3
1,410,828	+		IAI47_06760	0.38	-0.7
1,410,828	+		IAI47_06760	0.38	-1.4
1,410,828	+		IAI47_06760	0.38	+0.8
1,410,828	+		IAI47_06760	0.38	-0.2
1,410,828	+		IAI47_06760	0.38	+1.1
1,410,828	+		IAI47_06760	0.38	+0.3
1,410,828	+		IAI47_06760	0.38	+1.7
1,410,829	-		IAI47_06760	0.38	-0.4
1,410,829	-		IAI47_06760	0.38	+0.8
1,410,901	-		IAI47_06760	0.46	-0.0
1,410,940	+		IAI47_06760	0.51	+1.1
1,410,940	+		IAI47_06760	0.51	-1.4
1,410,940	+		IAI47_06760	0.51	+0.3
1,410,941	-		IAI47_06760	0.51	+1.6
1,410,973	+		IAI47_06760	0.54	+1.1
1,411,002	+		IAI47_06760	0.58	+0.1
1,411,002	+		IAI47_06760	0.58	+0.2
1,411,002	+		IAI47_06760	0.58	-0.3
1,411,002	+		IAI47_06760	0.58	+0.4
1,411,003	-		IAI47_06760	0.58	+1.6
1,411,003	-		IAI47_06760	0.58	-1.2
1,411,003	-		IAI47_06760	0.58	+0.8
1,411,006	+		IAI47_06760	0.58	+1.3
1,411,125	+		IAI47_06760	0.71	-0.5
1,411,390	+				-1.4
1,411,391	-				-0.2
1,411,391	-				+1.6
1,411,424	+				+2.0
1,411,425	-				-0.8
1,411,426	+				-1.6
1,411,427	-				-0.8
1,411,427	-				-0.8
1,411,427	-				+0.7
1,411,453	+				+1.1
1,411,453	+				+0.1
1,411,453	+				+0.4
1,411,453	+				+0.4
1,411,453	+				-0.6
1,411,454	-				-0.3
1,411,454	-				-0.0
1,411,487	+				+0.8
1,411,675	+		IAI47_06765	0.25	-0.4
1,411,676	-		IAI47_06765	0.26	+0.1
1,411,738	+		IAI47_06765	0.34	-1.2
1,411,738	+		IAI47_06765	0.34	-0.9
1,411,738	+		IAI47_06765	0.34	-1.5
1,411,738	+		IAI47_06765	0.34	-0.8
1,411,738	+		IAI47_06765	0.34	+0.3
1,411,738	+		IAI47_06765	0.34	+0.2
1,411,739	-		IAI47_06765	0.35	-1.2
1,411,739	-		IAI47_06765	0.35	-0.4
1,411,739	-		IAI47_06765	0.35	-1.1
1,411,739	-		IAI47_06765	0.35	+0.4
1,411,739	-		IAI47_06765	0.35	-2.5
1,411,739	-		IAI47_06765	0.35	-1.7
1,411,742	+		IAI47_06765	0.35	+0.1
1,411,743	-		IAI47_06765	0.35	+0.7
1,411,743	-		IAI47_06765	0.35	+0.3
1,411,750	+		IAI47_06765	0.36	-1.3
1,411,751	-		IAI47_06765	0.36	-0.5
1,411,751	-		IAI47_06765	0.36	-1.5
1,411,768	+		IAI47_06765	0.39	+0.2
1,411,768	+		IAI47_06765	0.39	-0.9
1,411,769	-		IAI47_06765	0.39	-0.2
1,411,769	-		IAI47_06765	0.39	-0.5
1,411,870	+		IAI47_06765	0.54	-0.2
1,411,870	+		IAI47_06765	0.54	-0.6
1,411,870	+		IAI47_06765	0.54	+0.7
1,411,870	+		IAI47_06765	0.54	+0.1
1,411,871	-		IAI47_06765	0.54	-0.8
1,411,871	-		IAI47_06765	0.54	+0.5
1,411,871	-		IAI47_06765	0.54	-0.5
1,411,871	-		IAI47_06765	0.54	+0.2
1,411,871	-		IAI47_06765	0.54	+1.3
1,411,871	-		IAI47_06765	0.54	-1.2
1,411,876	+		IAI47_06765	0.54	+0.3
1,411,876	+		IAI47_06765	0.54	+1.2
1,411,876	+		IAI47_06765	0.54	-0.6
1,411,876	+		IAI47_06765	0.54	-0.2
1,411,876	+		IAI47_06765	0.54	+0.3
1,411,877	-		IAI47_06765	0.55	+0.8
1,411,906	+		IAI47_06765	0.59	+0.4
1,411,906	+		IAI47_06765	0.59	-2.0
1,411,907	-		IAI47_06765	0.59	-1.6
1,411,907	-		IAI47_06765	0.59	+0.4
1,411,962	+		IAI47_06765	0.67	-0.1
1,412,032	-		IAI47_06765	0.77	+0.2
1,412,051	+		IAI47_06765	0.80	-0.3
1,412,052	-		IAI47_06765	0.80	-0.5
1,412,052	-		IAI47_06765	0.80	+1.5
1,412,071	+		IAI47_06765	0.83	-0.5
1,412,180	+				+0.8
1,412,180	+				+0.5
1,412,180	+				-0.8
1,412,180	+				+0.8
1,412,180	+				-1.8
1,412,180	+				+0.5
1,412,180	+				+1.8
1,412,180	+				+1.0
1,412,181	-				+0.8
1,412,181	-				+1.2
1,412,181	-				-1.2
1,412,181	-				-1.0
1,412,181	-				-1.4
1,412,181	-				-0.3
1,412,238	+		IAI47_06770	0.14	+0.2
1,412,238	+		IAI47_06770	0.14	+0.8
1,412,239	-		IAI47_06770	0.14	-0.2
1,412,239	-		IAI47_06770	0.14	-0.1
1,412,239	-		IAI47_06770	0.14	+0.3
1,412,292	-		IAI47_06770	0.27	+0.0
1,412,323	+		IAI47_06770	0.35	-0.2
1,412,323	+		IAI47_06770	0.35	+0.6
1,412,324	-		IAI47_06770	0.36	+0.5
1,412,324	-		IAI47_06770	0.36	+1.2
1,412,331	+		IAI47_06770	0.37	-0.3
1,412,366	+		IAI47_06770	0.46	-0.5
1,412,366	+		IAI47_06770	0.46	+1.8
1,412,367	-		IAI47_06770	0.47	-1.8
1,412,367	-		IAI47_06770	0.47	-2.4
1,412,367	-		IAI47_06770	0.47	-0.5
1,412,368	+		IAI47_06770	0.47	-1.3
1,412,368	+		IAI47_06770	0.47	+0.8
1,412,368	+		IAI47_06770	0.47	-0.4
1,412,369	-		IAI47_06770	0.47	-0.8
1,412,369	-		IAI47_06770	0.47	-1.7
1,412,369	-		IAI47_06770	0.47	-0.9