Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_02775 and IAI47_02780 are separated by 13 nucleotides IAI47_02780 and IAI47_02785 are separated by 2 nucleotides IAI47_02785 and IAI47_02790 are separated by 127 nucleotides IAI47_02790 and IAI47_02795 are separated by 11 nucleotides IAI47_02795 and IAI47_02800 are separated by 43 nucleotides
IAI47_02775: IAI47_02775 - glycine dehydrogenase, at 575,720 to 576,055
_02775
IAI47_02780: IAI47_02780 - hypothetical protein, at 576,069 to 576,425
_02780
IAI47_02785: IAI47_02785 - DUF4312 family protein, at 576,428 to 576,727
_02785
IAI47_02790: IAI47_02790 - DUF4311 domain-containing protein, at 576,855 to 577,631
_02790
IAI47_02795: IAI47_02795 - DUF4310 family protein, at 577,643 to 578,284
_02795
IAI47_02800: IAI47_02800 - amidohydrolase/deacetylase family metallohydrolase, at 578,328 to 579,458
_02800
Position (kb) 576
577
578 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 575.938 kb on + strand, within IAI47_02775 at 575.938 kb on + strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 575.939 kb on - strand, within IAI47_02775 at 576.028 kb on + strand at 576.029 kb on - strand at 576.029 kb on - strand at 576.053 kb on + strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.054 kb on - strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.073 kb on + strand at 576.074 kb on - strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.079 kb on + strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.080 kb on - strand at 576.097 kb on + strand at 576.101 kb on + strand at 576.101 kb on + strand at 576.101 kb on + strand at 576.102 kb on - strand at 576.102 kb on - strand at 576.120 kb on - strand, within IAI47_02780 at 576.120 kb on - strand, within IAI47_02780 at 576.176 kb on + strand, within IAI47_02780 at 576.177 kb on - strand, within IAI47_02780 at 576.177 kb on - strand, within IAI47_02780 at 576.222 kb on - strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.273 kb on + strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.274 kb on - strand, within IAI47_02780 at 576.279 kb on + strand, within IAI47_02780 at 576.279 kb on + strand, within IAI47_02780 at 576.280 kb on - strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.296 kb on + strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.297 kb on - strand, within IAI47_02780 at 576.329 kb on + strand, within IAI47_02780 at 576.329 kb on + strand, within IAI47_02780 at 576.330 kb on - strand, within IAI47_02780 at 576.347 kb on - strand, within IAI47_02780 at 576.380 kb on - strand, within IAI47_02780 at 576.380 kb on - strand, within IAI47_02780 at 576.427 kb on + strand at 576.428 kb on - strand at 576.428 kb on - strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.440 kb on + strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.441 kb on - strand at 576.446 kb on - strand at 576.446 kb on - strand at 576.475 kb on + strand, within IAI47_02785 at 576.712 kb on + strand at 576.713 kb on - strand at 576.725 kb on + strand at 576.726 kb on - strand at 576.726 kb on - strand at 576.741 kb on + strand at 576.742 kb on - strand at 576.793 kb on - strand at 576.829 kb on + strand at 576.829 kb on + strand at 576.830 kb on - strand at 576.846 kb on + strand at 576.846 kb on + strand at 576.847 kb on - strand at 576.847 kb on - strand at 576.847 kb on - strand at 576.848 kb on - strand at 576.974 kb on + strand, within IAI47_02790 at 577.148 kb on + strand, within IAI47_02790 at 577.149 kb on - strand, within IAI47_02790 at 577.327 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.405 kb on + strand, within IAI47_02790 at 577.406 kb on - strand, within IAI47_02790 at 577.406 kb on - strand, within IAI47_02790 at 577.406 kb on - strand, within IAI47_02790 at 577.406 kb on - strand, within IAI47_02790 at 577.406 kb on - strand, within IAI47_02790 at 577.406 kb on - strand, within IAI47_02790 at 577.442 kb on + strand, within IAI47_02790 at 577.443 kb on - strand, within IAI47_02790 at 577.487 kb on + strand, within IAI47_02790 at 577.487 kb on + strand, within IAI47_02790 at 577.554 kb on - strand at 577.629 kb on + strand at 577.629 kb on + strand at 577.630 kb on - strand at 577.654 kb on + strand at 577.655 kb on - strand at 577.655 kb on - strand at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.736 kb on + strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.737 kb on - strand, within IAI47_02795 at 577.739 kb on + strand, within IAI47_02795 at 577.739 kb on + strand, within IAI47_02795 at 577.739 kb on + strand, within IAI47_02795 at 577.739 kb on + strand, within IAI47_02795 at 577.739 kb on + strand, within IAI47_02795 at 577.739 kb on + strand, within IAI47_02795 at 577.739 kb on + strand, within IAI47_02795 at 577.739 kb on + strand, within IAI47_02795 at 577.740 kb on - strand, within IAI47_02795 at 577.740 kb on - strand, within IAI47_02795 at 577.740 kb on - strand, within IAI47_02795 at 577.740 kb on - strand, within IAI47_02795 at 577.745 kb on + strand, within IAI47_02795 at 577.814 kb on + strand, within IAI47_02795 at 577.814 kb on + strand, within IAI47_02795 at 577.861 kb on + strand, within IAI47_02795 at 577.862 kb on - strand, within IAI47_02795 at 578.024 kb on + strand, within IAI47_02795 at 578.025 kb on - strand, within IAI47_02795 at 578.030 kb on - strand, within IAI47_02795 at 578.032 kb on + strand, within IAI47_02795 at 578.033 kb on - strand, within IAI47_02795 at 578.044 kb on + strand, within IAI47_02795 at 578.076 kb on - strand, within IAI47_02795 at 578.137 kb on + strand, within IAI47_02795 at 578.204 kb on + strand, within IAI47_02795 at 578.204 kb on + strand, within IAI47_02795 at 578.205 kb on - strand, within IAI47_02795 at 578.205 kb on - strand, within IAI47_02795 at 578.205 kb on - strand, within IAI47_02795 at 578.331 kb on + strand at 578.331 kb on + strand at 578.331 kb on + strand at 578.332 kb on - strand at 578.332 kb on - strand at 578.332 kb on - strand at 578.332 kb on - strand at 578.467 kb on - strand, within IAI47_02800 at 578.505 kb on + strand, within IAI47_02800 at 578.505 kb on + strand, within IAI47_02800 at 578.523 kb on + strand, within IAI47_02800 at 578.523 kb on + strand, within IAI47_02800 at 578.523 kb on + strand, within IAI47_02800 at 578.523 kb on + strand, within IAI47_02800 at 578.523 kb on + strand, within IAI47_02800 at 578.523 kb on + strand, within IAI47_02800 at 578.524 kb on - strand, within IAI47_02800 at 578.524 kb on - strand, within IAI47_02800 at 578.524 kb on - strand, within IAI47_02800 at 578.524 kb on - strand, within IAI47_02800 at 578.524 kb on - strand, within IAI47_02800 at 578.551 kb on + strand, within IAI47_02800 at 578.551 kb on + strand, within IAI47_02800 at 578.552 kb on - strand, within IAI47_02800 at 578.616 kb on + strand, within IAI47_02800
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 575,938 + IAI47_02775 0.65 -1.3 575,938 + IAI47_02775 0.65 -0.4 575,939 - IAI47_02775 0.65 -1.0 575,939 - IAI47_02775 0.65 -0.3 575,939 - IAI47_02775 0.65 -1.2 576,028 + +1.3 576,029 - +1.2 576,029 - +1.0 576,053 + -0.5 576,054 - -0.2 576,054 - +0.2 576,054 - -1.2 576,054 - -0.6 576,073 + +0.1 576,073 + +0.1 576,073 + -0.7 576,073 + +3.3 576,073 + +0.7 576,073 + -1.0 576,074 - -2.8 576,079 + +0.7 576,079 + +1.5 576,079 + -0.1 576,079 + -0.8 576,080 - -0.5 576,080 - -0.6 576,080 - +0.1 576,080 - +0.8 576,080 - +0.5 576,080 - +0.1 576,097 + +0.4 576,101 + +0.8 576,101 + -0.0 576,101 + +0.8 576,102 - +0.0 576,102 - -0.1 576,120 - IAI47_02780 0.14 +0.8 576,120 - IAI47_02780 0.14 -1.4 576,176 + IAI47_02780 0.30 -1.8 576,177 - IAI47_02780 0.30 -0.6 576,177 - IAI47_02780 0.30 +1.4 576,222 - IAI47_02780 0.43 -1.5 576,273 + IAI47_02780 0.57 -1.9 576,273 + IAI47_02780 0.57 +3.4 576,273 + IAI47_02780 0.57 -0.5 576,273 + IAI47_02780 0.57 -1.6 576,273 + IAI47_02780 0.57 -0.9 576,274 - IAI47_02780 0.57 +0.0 576,274 - IAI47_02780 0.57 +1.5 576,274 - IAI47_02780 0.57 +2.1 576,274 - IAI47_02780 0.57 +0.6 576,274 - IAI47_02780 0.57 +0.1 576,274 - IAI47_02780 0.57 +0.6 576,274 - IAI47_02780 0.57 +0.8 576,274 - IAI47_02780 0.57 -0.4 576,274 - IAI47_02780 0.57 +0.0 576,274 - IAI47_02780 0.57 -0.3 576,274 - IAI47_02780 0.57 +0.1 576,279 + IAI47_02780 0.59 -0.1 576,279 + IAI47_02780 0.59 -0.3 576,280 - IAI47_02780 0.59 -0.2 576,296 + IAI47_02780 0.64 -0.3 576,296 + IAI47_02780 0.64 -1.2 576,296 + IAI47_02780 0.64 +1.3 576,296 + IAI47_02780 0.64 -0.6 576,296 + IAI47_02780 0.64 -0.7 576,297 - IAI47_02780 0.64 +0.2 576,297 - IAI47_02780 0.64 -0.4 576,297 - IAI47_02780 0.64 -0.5 576,297 - IAI47_02780 0.64 -0.4 576,329 + IAI47_02780 0.73 +0.4 576,329 + IAI47_02780 0.73 +1.4 576,330 - IAI47_02780 0.73 +1.6 576,347 - IAI47_02780 0.78 -0.1 576,380 - IAI47_02780 0.87 -0.1 576,380 - IAI47_02780 0.87 +0.8 576,427 + -1.1 576,428 - -0.4 576,428 - +0.3 576,440 + +0.3 576,440 + +0.8 576,440 + -0.6 576,440 + -1.2 576,440 + +1.7 576,440 + -2.0 576,440 + -0.9 576,441 - +0.7 576,441 - -0.6 576,441 - -1.4 576,441 - +0.5 576,441 - -1.0 576,441 - -0.9 576,446 - +0.3 576,446 - -0.6 576,475 + IAI47_02785 0.16 -2.0 576,712 + +0.8 576,713 - -1.2 576,725 + +0.8 576,726 - -0.7 576,726 - +0.2 576,741 + -0.2 576,742 - -0.8 576,793 - -0.8 576,829 + +0.1 576,829 + +0.1 576,830 - -1.2 576,846 + +0.4 576,846 + +1.2 576,847 - -1.5 576,847 - -1.2 576,847 - -1.8 576,848 - +0.3 576,974 + IAI47_02790 0.15 -2.5 577,148 + IAI47_02790 0.38 +1.0 577,149 - IAI47_02790 0.38 -0.2 577,327 + IAI47_02790 0.61 +1.1 577,405 + IAI47_02790 0.71 -0.3 577,405 + IAI47_02790 0.71 +0.1 577,405 + IAI47_02790 0.71 -1.3 577,405 + IAI47_02790 0.71 -1.1 577,405 + IAI47_02790 0.71 -1.1 577,405 + IAI47_02790 0.71 +0.7 577,405 + IAI47_02790 0.71 +0.8 577,405 + IAI47_02790 0.71 -0.8 577,405 + IAI47_02790 0.71 -1.2 577,405 + IAI47_02790 0.71 -0.3 577,406 - IAI47_02790 0.71 +1.4 577,406 - IAI47_02790 0.71 -0.5 577,406 - IAI47_02790 0.71 -0.1 577,406 - IAI47_02790 0.71 +0.4 577,406 - IAI47_02790 0.71 +1.3 577,406 - IAI47_02790 0.71 +0.5 577,442 + IAI47_02790 0.76 +0.8 577,443 - IAI47_02790 0.76 -0.7 577,487 + IAI47_02790 0.81 -0.5 577,487 + IAI47_02790 0.81 +1.6 577,554 - -1.4 577,629 + -0.2 577,629 + -1.2 577,630 - -0.8 577,654 + +0.1 577,655 - +0.3 577,655 - -0.2 577,736 + IAI47_02795 0.14 +0.1 577,736 + IAI47_02795 0.14 -1.2 577,736 + IAI47_02795 0.14 +2.0 577,736 + IAI47_02795 0.14 -0.6 577,736 + IAI47_02795 0.14 -0.8 577,736 + IAI47_02795 0.14 -1.8 577,736 + IAI47_02795 0.14 -0.2 577,736 + IAI47_02795 0.14 -0.8 577,736 + IAI47_02795 0.14 +1.9 577,736 + IAI47_02795 0.14 -0.3 577,736 + IAI47_02795 0.14 -0.3 577,736 + IAI47_02795 0.14 -0.9 577,736 + IAI47_02795 0.14 -0.6 577,736 + IAI47_02795 0.14 -0.2 577,736 + IAI47_02795 0.14 -0.6 577,736 + IAI47_02795 0.14 +1.7 577,736 + IAI47_02795 0.14 +0.6 577,736 + IAI47_02795 0.14 +1.3 577,737 - IAI47_02795 0.15 +2.1 577,737 - IAI47_02795 0.15 +0.8 577,737 - IAI47_02795 0.15 +0.6 577,737 - IAI47_02795 0.15 -1.5 577,737 - IAI47_02795 0.15 -0.2 577,737 - IAI47_02795 0.15 -0.3 577,737 - IAI47_02795 0.15 +1.0 577,737 - IAI47_02795 0.15 +0.3 577,737 - IAI47_02795 0.15 -2.0 577,737 - IAI47_02795 0.15 -0.4 577,737 - IAI47_02795 0.15 +0.7 577,737 - IAI47_02795 0.15 +0.2 577,737 - IAI47_02795 0.15 -0.1 577,737 - IAI47_02795 0.15 -0.6 577,737 - IAI47_02795 0.15 +0.6 577,737 - IAI47_02795 0.15 +0.7 577,737 - IAI47_02795 0.15 +2.0 577,737 - IAI47_02795 0.15 -0.8 577,737 - IAI47_02795 0.15 +0.8 577,737 - IAI47_02795 0.15 +0.0 577,737 - IAI47_02795 0.15 -0.7 577,737 - IAI47_02795 0.15 +1.0 577,737 - IAI47_02795 0.15 +0.5 577,737 - IAI47_02795 0.15 +1.8 577,737 - IAI47_02795 0.15 +0.5 577,737 - IAI47_02795 0.15 +0.1 577,737 - IAI47_02795 0.15 +1.5 577,739 + IAI47_02795 0.15 +0.4 577,739 + IAI47_02795 0.15 +1.1 577,739 + IAI47_02795 0.15 +0.3 577,739 + IAI47_02795 0.15 +0.6 577,739 + IAI47_02795 0.15 -0.0 577,739 + IAI47_02795 0.15 +0.7 577,739 + IAI47_02795 0.15 +1.0 577,739 + IAI47_02795 0.15 -0.4 577,740 - IAI47_02795 0.15 +0.2 577,740 - IAI47_02795 0.15 +0.5 577,740 - IAI47_02795 0.15 -1.2 577,740 - IAI47_02795 0.15 -2.6 577,745 + IAI47_02795 0.16 +1.8 577,814 + IAI47_02795 0.27 +0.4 577,814 + IAI47_02795 0.27 +1.7 577,861 + IAI47_02795 0.34 -1.3 577,862 - IAI47_02795 0.34 -0.2 578,024 + IAI47_02795 0.59 -1.2 578,025 - IAI47_02795 0.60 -1.3 578,030 - IAI47_02795 0.60 -0.1 578,032 + IAI47_02795 0.61 +0.7 578,033 - IAI47_02795 0.61 -0.4 578,044 + IAI47_02795 0.62 +1.4 578,076 - IAI47_02795 0.67 -1.8 578,137 + IAI47_02795 0.77 -0.8 578,204 + IAI47_02795 0.87 -0.6 578,204 + IAI47_02795 0.87 +0.8 578,205 - IAI47_02795 0.88 +0.4 578,205 - IAI47_02795 0.88 +0.7 578,205 - IAI47_02795 0.88 +0.5 578,331 + +1.1 578,331 + +2.9 578,331 + +0.8 578,332 - -1.8 578,332 - -0.1 578,332 - -1.8 578,332 - -0.5 578,467 - IAI47_02800 0.12 -0.5 578,505 + IAI47_02800 0.16 -0.2 578,505 + IAI47_02800 0.16 +1.9 578,523 + IAI47_02800 0.17 +0.1 578,523 + IAI47_02800 0.17 -0.5 578,523 + IAI47_02800 0.17 +0.2 578,523 + IAI47_02800 0.17 +0.7 578,523 + IAI47_02800 0.17 -0.3 578,523 + IAI47_02800 0.17 +1.1 578,524 - IAI47_02800 0.17 +0.8 578,524 - IAI47_02800 0.17 -0.4 578,524 - IAI47_02800 0.17 -0.2 578,524 - IAI47_02800 0.17 -1.7 578,524 - IAI47_02800 0.17 +0.5 578,551 + IAI47_02800 0.20 -1.5 578,551 + IAI47_02800 0.20 -0.5 578,552 - IAI47_02800 0.20 +0.5 578,616 + IAI47_02800 0.25 +0.8
Or see this region's nucleotide sequence