Strain Fitness in Pantoea sp. MT58 around IAI47_13800

Experiment: Ying_Nucleobase14 rep B; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep B; time point 1
2,921,313	+		IAI47_13790	0.76	+1.1
2,921,313	+		IAI47_13790	0.76	-0.0
2,921,413	-				-0.4
2,921,419	+				-1.0
2,921,422	+				-0.7
2,921,422	+				-0.5
2,921,423	-				+1.8
2,921,423	-				-0.7
2,921,456	-				+0.3
2,921,501	-				-0.4
2,921,515	-				+0.5
2,921,515	-				+0.8
2,921,534	+				+0.4
2,921,534	+				+0.8
2,921,534	+				-0.7
2,921,534	+				+0.8
2,921,534	+				+2.9
2,921,534	+				+0.8
2,921,534	+				+0.6
2,921,535	-				-1.2
2,921,624	+		IAI47_13795	0.12	+0.2
2,921,624	+		IAI47_13795	0.12	-1.9
2,921,624	+		IAI47_13795	0.12	-1.8
2,921,624	+		IAI47_13795	0.12	-1.7
2,921,624	+		IAI47_13795	0.12	-0.1
2,921,624	+		IAI47_13795	0.12	-1.1
2,921,624	+		IAI47_13795	0.12	-0.8
2,921,624	+		IAI47_13795	0.12	-3.2
2,921,624	+		IAI47_13795	0.12	-1.0
2,921,624	+		IAI47_13795	0.12	-1.5
2,921,624	+		IAI47_13795	0.12	+0.3
2,921,625	-		IAI47_13795	0.12	-0.2
2,921,625	-		IAI47_13795	0.12	-0.7
2,921,625	-		IAI47_13795	0.12	-1.9
2,921,625	-		IAI47_13795	0.12	-1.1
2,921,625	-		IAI47_13795	0.12	-1.1
2,921,625	-		IAI47_13795	0.12	-0.6
2,921,625	-		IAI47_13795	0.12	-0.6
2,921,669	-		IAI47_13795	0.18	-3.1
2,921,690	+		IAI47_13795	0.21	-1.5
2,921,691	-		IAI47_13795	0.21	-0.0
2,921,691	-		IAI47_13795	0.21	+1.3
2,921,714	-		IAI47_13795	0.24	-0.8
2,921,781	+		IAI47_13795	0.33	-1.2
2,921,781	+		IAI47_13795	0.33	-0.2
2,921,823	+		IAI47_13795	0.39	-1.9
2,921,944	+		IAI47_13795	0.55	-0.2
2,921,945	-		IAI47_13795	0.55	-1.7
2,921,945	-		IAI47_13795	0.55	+0.6
2,921,946	+		IAI47_13795	0.55	+0.8
2,921,946	+		IAI47_13795	0.55	-0.0
2,921,946	+		IAI47_13795	0.55	-1.8
2,921,946	+		IAI47_13795	0.55	-0.7
2,921,947	-		IAI47_13795	0.56	-0.2
2,921,947	-		IAI47_13795	0.56	-1.8
2,921,947	-		IAI47_13795	0.56	-1.6
2,921,947	-		IAI47_13795	0.56	-1.9
2,921,947	-		IAI47_13795	0.56	-0.7
2,921,965	+		IAI47_13795	0.58	+0.0
2,921,965	+		IAI47_13795	0.58	-1.0
2,921,966	-		IAI47_13795	0.58	-2.4
2,921,966	-		IAI47_13795	0.58	-0.7
2,921,966	-		IAI47_13795	0.58	-1.2
2,921,966	-		IAI47_13795	0.58	-0.2
2,922,025	-		IAI47_13795	0.66	-2.1
2,922,025	-		IAI47_13795	0.66	-1.0
2,922,025	-		IAI47_13795	0.66	-0.8
2,922,025	-		IAI47_13795	0.66	-1.0
2,922,039	+		IAI47_13795	0.68	-0.6
2,922,039	+		IAI47_13795	0.68	-2.0
2,922,039	+		IAI47_13795	0.68	-1.8
2,922,040	-		IAI47_13795	0.68	-1.6
2,922,040	-		IAI47_13795	0.68	-1.8
2,922,353	+				-1.4
2,922,353	+				+0.5
2,922,354	-				+0.4
2,922,354	-				-0.7
2,922,354	-				+1.4
2,922,394	+		IAI47_13800	0.14	+0.1
2,922,394	+		IAI47_13800	0.14	-1.0
2,922,395	-		IAI47_13800	0.14	+1.7
2,922,462	+		IAI47_13800	0.21	+0.3
2,922,462	+		IAI47_13800	0.21	+1.3
2,922,462	+		IAI47_13800	0.21	-0.7
2,922,462	+		IAI47_13800	0.21	-1.0
2,922,462	+		IAI47_13800	0.21	+0.2
2,922,462	+		IAI47_13800	0.21	+1.2
2,922,462	+		IAI47_13800	0.21	-1.4
2,922,462	+		IAI47_13800	0.21	+1.1
2,922,462	+		IAI47_13800	0.21	+0.8
2,922,463	-		IAI47_13800	0.21	+0.3
2,922,463	-		IAI47_13800	0.21	+1.4
2,922,463	-		IAI47_13800	0.21	+0.8
2,922,463	-		IAI47_13800	0.21	+0.2
2,922,463	-		IAI47_13800	0.21	-0.1
2,922,463	-		IAI47_13800	0.21	+1.2
2,922,463	-		IAI47_13800	0.21	-0.3
2,922,545	+		IAI47_13800	0.30	+0.2
2,922,546	-		IAI47_13800	0.30	+0.3
2,922,546	-		IAI47_13800	0.30	+1.8
2,922,649	+		IAI47_13800	0.41	-0.0
2,922,650	-		IAI47_13800	0.42	+0.5
2,922,650	-		IAI47_13800	0.42	+1.3
2,922,699	+		IAI47_13800	0.47	-2.0
2,922,859	+		IAI47_13800	0.64	-0.2
2,922,860	-		IAI47_13800	0.64	+1.8
2,922,860	-		IAI47_13800	0.64	-0.6
2,922,860	-		IAI47_13800	0.64	-0.7
2,922,860	-		IAI47_13800	0.64	+0.3
2,922,869	+		IAI47_13800	0.65	+0.5
2,922,870	-		IAI47_13800	0.65	+0.4
2,922,870	-		IAI47_13800	0.65	-1.6
2,922,870	-		IAI47_13800	0.65	-1.0
2,922,870	-		IAI47_13800	0.65	+1.8
2,923,062	+		IAI47_13800	0.86	-0.3
2,923,068	+		IAI47_13800	0.86	-2.5
2,923,068	+		IAI47_13800	0.86	-0.2
2,923,069	-		IAI47_13800	0.87	-0.0
2,923,069	-		IAI47_13800	0.87	+0.9
2,923,093	+		IAI47_13800	0.89	-0.1
2,923,118	+				+0.3
2,923,138	+				+0.6
2,923,188	+				+1.1
2,923,193	+				+0.1
2,923,193	+				-0.1
2,923,193	+				+0.2
2,923,193	+				-0.4
2,923,193	+				-0.8
2,923,193	+				+0.6
2,923,193	+				-0.7
2,923,193	+				-0.4
2,923,193	+				+0.6
2,923,194	-				+3.9
2,923,194	-				-0.5
2,923,194	-				-0.1
2,923,194	-				+0.2
2,923,327	-		IAI47_13805	0.21	-0.4
2,923,327	-		IAI47_13805	0.21	-0.7
2,923,327	-		IAI47_13805	0.21	+0.3
2,923,470	+		IAI47_13805	0.43	+0.5
2,923,470	+		IAI47_13805	0.43	+0.8
2,923,470	+		IAI47_13805	0.43	+0.0
2,923,471	-		IAI47_13805	0.43	+0.1
2,923,563	+		IAI47_13805	0.57	-0.4
2,923,563	+		IAI47_13805	0.57	+0.0
2,923,564	-		IAI47_13805	0.57	+0.4
2,923,581	-		IAI47_13805	0.60	+0.8
2,923,598	+		IAI47_13805	0.63	-0.5
2,923,598	+		IAI47_13805	0.63	-0.4
2,923,598	+		IAI47_13805	0.63	-1.6
2,923,599	-		IAI47_13805	0.63	+0.0
2,923,744	+		IAI47_13805	0.85	-1.4
2,923,744	+		IAI47_13805	0.85	-0.8
2,923,744	+		IAI47_13805	0.85	+0.5
2,923,745	-		IAI47_13805	0.85	+0.3
2,923,745	-		IAI47_13805	0.85	-0.9
2,923,745	-		IAI47_13805	0.85	+2.8
2,923,745	-		IAI47_13805	0.85	-0.6
2,923,745	-		IAI47_13805	0.85	+0.2
2,923,756	+		IAI47_13805	0.87	+0.2
2,923,756	+		IAI47_13805	0.87	-0.4
2,923,756	+		IAI47_13805	0.87	-0.6
2,923,757	-		IAI47_13805	0.87	+0.9
2,923,757	-		IAI47_13805	0.87	+1.3
2,923,757	-		IAI47_13805	0.87	-0.6
2,923,821	-				-0.1
2,923,821	-				-0.2
2,923,824	+				-0.7
2,923,825	-				-0.3
2,923,848	+				-0.2
2,923,848	+				+0.2
2,923,913	+				-0.0
2,923,913	+				+0.2
2,923,913	+				+0.6
2,923,913	+				+0.2
2,923,914	-				+1.3
2,923,917	+				-0.3
2,923,917	+				+0.4
2,923,917	+				+1.8
2,923,918	-				-1.2
2,923,918	-				+0.8
2,923,921	+				+0.2
2,923,921	+				+1.4
2,923,921	+				-1.0
2,923,930	+				+0.1
2,923,930	+				+1.5
2,923,930	+				+0.0
2,923,930	+				+1.5
2,923,930	+				+1.5
2,923,930	+				-0.5
2,923,930	+				+1.8
2,923,931	-				+0.3
2,923,931	-				-1.0
2,923,931	-				+1.4
2,923,962	-				-0.2
2,923,964	-				-0.7
2,923,968	-				+1.8
2,923,968	-				+0.2
2,923,968	-				-0.8
2,923,968	-				+0.2
2,924,021	+				-1.6
2,924,021	+				-0.5
2,924,021	+				-0.1
2,924,021	+				+0.2
2,924,022	-				-2.3
2,924,024	-				+1.4
2,924,080	-		IAI47_13810	0.10	+0.2
2,924,177	+		IAI47_13810	0.23	+0.0
2,924,177	+		IAI47_13810	0.23	-1.8
2,924,177	+		IAI47_13810	0.23	+0.3
2,924,177	+		IAI47_13810	0.23	-0.2
2,924,177	+		IAI47_13810	0.23	-0.5
2,924,178	-		IAI47_13810	0.23	-1.9
2,924,178	-		IAI47_13810	0.23	-1.0
2,924,178	-		IAI47_13810	0.23	+0.5
2,924,179	+		IAI47_13810	0.24	+1.3
2,924,179	+		IAI47_13810	0.24	-0.2
2,924,179	+		IAI47_13810	0.24	-0.1
2,924,179	+		IAI47_13810	0.24	-0.6
2,924,179	+		IAI47_13810	0.24	-0.2
2,924,179	+		IAI47_13810	0.24	+0.2
2,924,179	+		IAI47_13810	0.24	+0.4
2,924,179	+		IAI47_13810	0.24	-1.2
2,924,179	+		IAI47_13810	0.24	+0.0
2,924,179	+		IAI47_13810	0.24	-0.1
2,924,179	+		IAI47_13810	0.24	+0.1
2,924,179	+		IAI47_13810	0.24	+0.0
2,924,179	+		IAI47_13810	0.24	-0.5
2,924,179	+		IAI47_13810	0.24	-1.5
2,924,180	-		IAI47_13810	0.24	-0.1
2,924,180	-		IAI47_13810	0.24	-0.6
2,924,180	-		IAI47_13810	0.24	+0.4
2,924,180	-		IAI47_13810	0.24	-0.0
2,924,180	-		IAI47_13810	0.24	+0.2
2,924,180	-		IAI47_13810	0.24	-0.4
2,924,180	-		IAI47_13810	0.24	-1.9
2,924,180	-		IAI47_13810	0.24	-0.7
2,924,180	-		IAI47_13810	0.24	-1.6
2,924,180	-		IAI47_13810	0.24	+0.4
2,924,180	-		IAI47_13810	0.24	-0.8
2,924,180	-		IAI47_13810	0.24	-0.5
2,924,180	-		IAI47_13810	0.24	-0.9
2,924,180	-		IAI47_13810	0.24	+0.4
2,924,180	-		IAI47_13810	0.24	+1.0
2,924,180	-		IAI47_13810	0.24	-0.5
2,924,180	-		IAI47_13810	0.24	+2.1
2,924,180	-		IAI47_13810	0.24	-0.2
2,924,180	-		IAI47_13810	0.24	+0.1