Strain Fitness in Pantoea sp. MT58 around IAI47_17360

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
3,675,755	-		IAI47_17350	0.71	+0.0
3,675,755	-		IAI47_17350	0.71	+0.1
3,675,755	-		IAI47_17350	0.71	-1.0
3,675,755	-		IAI47_17350	0.71	-1.0
3,675,775	+		IAI47_17350	0.73	+0.0
3,675,776	-		IAI47_17350	0.73	-0.8
3,675,791	+		IAI47_17350	0.74	+1.3
3,675,791	+		IAI47_17350	0.74	+0.3
3,675,791	+		IAI47_17350	0.74	+1.0
3,675,791	+		IAI47_17350	0.74	-1.0
3,675,791	+		IAI47_17350	0.74	+0.0
3,675,791	+		IAI47_17350	0.74	+0.5
3,675,791	+		IAI47_17350	0.74	+0.3
3,675,791	+		IAI47_17350	0.74	+1.0
3,675,791	+		IAI47_17350	0.74	+0.5
3,675,791	+		IAI47_17350	0.74	-2.3
3,675,792	-		IAI47_17350	0.74	+2.2
3,675,792	-		IAI47_17350	0.74	+0.4
3,675,792	-		IAI47_17350	0.74	-1.8
3,675,792	-		IAI47_17350	0.74	+1.0
3,675,792	-		IAI47_17350	0.74	-0.2
3,675,792	-		IAI47_17350	0.74	-1.8
3,675,792	-		IAI47_17350	0.74	+0.3
3,675,792	-		IAI47_17350	0.74	+3.0
3,675,864	+		IAI47_17350	0.79	+0.3
3,675,864	+		IAI47_17350	0.79	-1.3
3,675,864	+		IAI47_17350	0.79	+0.1
3,675,864	+		IAI47_17350	0.79	+0.0
3,675,864	+		IAI47_17350	0.79	-0.2
3,675,865	-		IAI47_17350	0.79	-0.4
3,675,885	+		IAI47_17350	0.81	+1.2
3,675,885	+		IAI47_17350	0.81	+2.2
3,675,885	+		IAI47_17350	0.81	+1.6
3,675,885	+		IAI47_17350	0.81	+2.0
3,675,885	+		IAI47_17350	0.81	-0.7
3,675,885	+		IAI47_17350	0.81	-0.9
3,675,886	-		IAI47_17350	0.81	-1.2
3,675,886	-		IAI47_17350	0.81	+0.0
3,675,886	-		IAI47_17350	0.81	-1.2
3,675,886	-		IAI47_17350	0.81	-0.4
3,675,901	-		IAI47_17350	0.82	-0.6
3,675,936	+		IAI47_17350	0.84	-0.4
3,675,937	-		IAI47_17350	0.85	-0.6
3,675,956	+		IAI47_17350	0.86	+0.4
3,675,956	+		IAI47_17350	0.86	-0.2
3,675,956	+		IAI47_17350	0.86	-0.6
3,675,956	+		IAI47_17350	0.86	-0.3
3,675,956	+		IAI47_17350	0.86	-0.4
3,675,956	+		IAI47_17350	0.86	-0.3
3,675,957	-		IAI47_17350	0.86	+1.4
3,675,957	-		IAI47_17350	0.86	-0.6
3,675,957	-		IAI47_17350	0.86	+1.0
3,675,958	+		IAI47_17350	0.86	-0.7
3,675,959	-		IAI47_17350	0.86	-2.7
3,675,959	-		IAI47_17350	0.86	+0.0
3,675,959	-		IAI47_17350	0.86	+1.3
3,675,959	-		IAI47_17350	0.86	+0.0
3,675,959	-		IAI47_17350	0.86	+0.3
3,675,975	+		IAI47_17350	0.87	+0.5
3,675,975	+		IAI47_17350	0.87	-1.3
3,675,975	+		IAI47_17350	0.87	+0.2
3,676,024	+				-0.2
3,676,024	+				-0.6
3,676,024	+				-0.1
3,676,024	+				-0.4
3,676,024	+				+0.4
3,676,024	+				-2.6
3,676,024	+				-0.4
3,676,025	-				+0.8
3,676,025	-				-0.3
3,676,025	-				+0.7
3,676,025	-				-2.7
3,676,034	+				+0.2
3,676,034	+				-0.2
3,676,034	+				-1.0
3,676,035	-				+0.0
3,676,065	-				+0.3
3,676,065	-				-0.6
3,676,065	-				+2.3
3,676,090	+				-0.2
3,676,098	+				+1.6
3,676,103	+				-1.2
3,676,103	+				+0.3
3,676,104	-				-0.1
3,676,104	-				+4.0
3,676,104	-				-2.2
3,676,131	-				+2.0
3,676,198	+				-1.1
3,676,198	+				-1.4
3,676,198	+				+0.4
3,676,198	+				-0.3
3,676,198	+				+0.8
3,676,198	+				+1.0
3,676,199	-				+1.5
3,676,199	-				-0.4
3,676,199	-				-0.7
3,676,199	-				-0.5
3,676,199	-				+0.2
3,676,200	+				-0.7
3,676,201	-				+1.3
3,676,201	-				-0.6
3,676,245	+				-1.3
3,676,245	+				+0.2
3,676,245	+				+0.6
3,676,246	-				+2.0
3,676,246	-				+0.5
3,676,246	-				+1.3
3,676,246	-				-0.6
3,676,246	-				-2.0
3,676,252	-				+0.2
3,676,252	-				-1.3
3,676,286	+				+1.0
3,676,314	+		IAI47_17355	0.11	-0.6
3,676,315	-		IAI47_17355	0.12	+0.9
3,676,315	-		IAI47_17355	0.12	+0.4
3,676,326	+		IAI47_17355	0.14	+1.0
3,676,327	-		IAI47_17355	0.14	+2.4
3,676,327	-		IAI47_17355	0.14	-0.3
3,676,327	-		IAI47_17355	0.14	+0.0
3,676,343	+		IAI47_17355	0.18	-0.4
3,676,343	+		IAI47_17355	0.18	+0.3
3,676,343	+		IAI47_17355	0.18	+0.3
3,676,343	+		IAI47_17355	0.18	+1.0
3,676,343	+		IAI47_17355	0.18	+1.3
3,676,343	+		IAI47_17355	0.18	+0.7
3,676,344	-		IAI47_17355	0.18	-0.6
3,676,344	-		IAI47_17355	0.18	+1.0
3,676,344	-		IAI47_17355	0.18	-0.4
3,676,364	+		IAI47_17355	0.22	+0.8
3,676,364	+		IAI47_17355	0.22	-1.0
3,676,365	-		IAI47_17355	0.22	+1.0
3,676,365	-		IAI47_17355	0.22	+0.0
3,676,398	+		IAI47_17355	0.29	+0.2
3,676,422	+		IAI47_17355	0.34	+2.6
3,676,423	-		IAI47_17355	0.35	-0.9
3,676,423	-		IAI47_17355	0.35	+0.0
3,676,454	-		IAI47_17355	0.41	+0.9
3,676,469	+		IAI47_17355	0.44	-1.3
3,676,469	+		IAI47_17355	0.44	+1.2
3,676,470	-		IAI47_17355	0.45	-0.2
3,676,477	-		IAI47_17355	0.46	+0.3
3,676,505	+		IAI47_17355	0.52	+0.0
3,676,514	+		IAI47_17355	0.54	-0.9
3,676,556	+		IAI47_17355	0.63	-0.4
3,676,556	+		IAI47_17355	0.63	-1.6
3,676,557	-		IAI47_17355	0.63	-1.6
3,676,557	-		IAI47_17355	0.63	-1.2
3,676,557	-		IAI47_17355	0.63	-2.3
3,676,557	-		IAI47_17355	0.63	+1.4
3,676,557	-		IAI47_17355	0.63	+0.2
3,676,557	-		IAI47_17355	0.63	-1.3
3,676,557	-		IAI47_17355	0.63	-0.3
3,676,569	+		IAI47_17355	0.66	+0.2
3,676,569	+		IAI47_17355	0.66	+0.5
3,676,570	-		IAI47_17355	0.66	-0.3
3,676,570	-		IAI47_17355	0.66	-1.2
3,676,698	+				-0.7
3,676,698	+				+0.3
3,676,698	+				-0.4
3,676,699	-				-0.5
3,676,746	+				+0.7
3,676,746	+				-0.4
3,676,746	+				-0.1
3,676,746	+				-1.5
3,676,746	+				+0.8
3,676,746	+				-1.3
3,676,746	+				-1.6
3,676,746	+				+0.4
3,676,746	+				+2.2
3,676,746	+				+1.0
3,676,746	+				+0.5
3,676,746	+				+1.0
3,676,746	+				+0.2
3,676,746	+				-0.2
3,676,747	-				+2.6
3,676,747	-				-1.4
3,676,747	-				+0.6
3,676,747	-				+0.0
3,676,747	-				+1.3
3,676,747	-				-0.3
3,676,747	-				+0.0
3,676,747	-				-0.3
3,676,747	-				-0.2
3,676,747	-				+1.0
3,676,747	-				+1.0
3,676,747	-				-0.2
3,676,747	-				-0.5
3,676,747	-				+0.6
3,676,750	+				+0.0
3,676,750	+				+0.6
3,676,750	+				+0.6
3,676,750	+				-0.6
3,676,750	+				-0.4
3,676,750	+				+0.5
3,676,751	-				+1.4
3,676,751	-				+1.8
3,676,751	-				+0.0
3,676,751	-				-3.0
3,676,751	-				-1.2
3,676,770	+				-0.4
3,676,770	+				+0.6
3,676,771	-				-0.2
3,676,771	-				-0.7
3,676,771	-				+1.0
3,676,783	+				-0.6
3,676,783	+				-0.1
3,676,784	-				-0.5
3,676,784	-				-1.4
3,676,816	+		IAI47_17360	0.16	-3.0
3,676,816	+		IAI47_17360	0.16	+0.0
3,676,817	-		IAI47_17360	0.16	+0.7
3,676,830	+		IAI47_17360	0.19	-0.2
3,676,852	+		IAI47_17360	0.23	+0.7
3,676,852	+		IAI47_17360	0.23	-0.6
3,676,853	-		IAI47_17360	0.24	-0.6
3,676,873	-		IAI47_17360	0.28	-1.6
3,676,873	-		IAI47_17360	0.28	-3.2
3,676,873	-		IAI47_17360	0.28	-0.4
3,676,916	+		IAI47_17360	0.38	+0.6
3,676,916	+		IAI47_17360	0.38	-1.2
3,676,916	+		IAI47_17360	0.38	-0.6
3,676,916	+		IAI47_17360	0.38	+0.0
3,676,938	+		IAI47_17360	0.42	-2.7
3,676,938	+		IAI47_17360	0.42	+1.0
3,676,938	+		IAI47_17360	0.42	+0.7
3,676,938	+		IAI47_17360	0.42	-1.1
3,676,938	+		IAI47_17360	0.42	+0.1
3,676,938	+		IAI47_17360	0.42	-0.1
3,676,938	+		IAI47_17360	0.42	-0.8
3,676,938	-		IAI47_17360	0.42	-1.7
3,676,939	-		IAI47_17360	0.43	-2.4
3,676,939	-		IAI47_17360	0.43	-0.8
3,677,028	+		IAI47_17360	0.62	+0.2
3,677,065	+		IAI47_17360	0.70	+0.1
3,677,065	+		IAI47_17360	0.70	+1.0
3,677,065	+		IAI47_17360	0.70	+0.2
3,677,066	-		IAI47_17360	0.70	-0.8
3,677,066	-		IAI47_17360	0.70	+0.6
3,677,066	-		IAI47_17360	0.70	+0.3
3,677,080	+		IAI47_17360	0.73	+0.5
3,677,080	+		IAI47_17360	0.73	+1.8
3,677,080	+		IAI47_17360	0.73	-0.7
3,677,080	+		IAI47_17360	0.73	+1.4
3,677,080	+		IAI47_17360	0.73	-0.8
3,677,080	+		IAI47_17360	0.73	-1.3
3,677,080	+		IAI47_17360	0.73	-0.1
3,677,080	+		IAI47_17360	0.73	-1.2
3,677,081	-		IAI47_17360	0.74	-0.6
3,677,081	-		IAI47_17360	0.74	-0.6
3,677,081	-		IAI47_17360	0.74	-0.6
3,677,081	-		IAI47_17360	0.74	-2.0
3,677,081	-		IAI47_17360	0.74	+0.0
3,677,081	-		IAI47_17360	0.74	+0.8
3,677,081	-		IAI47_17360	0.74	-1.3
3,677,081	-		IAI47_17360	0.74	-3.2
3,677,081	-		IAI47_17360	0.74	-0.6
3,677,081	-		IAI47_17360	0.74	-1.2
3,677,083	+		IAI47_17360	0.74	+0.4
3,677,084	-		IAI47_17360	0.74	+0.5
3,677,169	+				-1.3
3,677,169	+				-0.1
3,677,185	+				-2.6
3,677,185	+				-1.3
3,677,185	+				-1.8
3,677,185	+				+0.2
3,677,185	+				+1.4
3,677,185	+				+0.1
3,677,185	+				-0.2
3,677,185	+				+0.2
3,677,186	-				-2.3
3,677,186	-				-1.4
3,677,186	-				-0.2
3,677,186	-				-0.6
3,677,186	-				-1.2
3,677,186	-				+1.0
3,677,186	-				+1.0
3,677,186	-				+0.4
3,677,186	-				+1.0
3,677,186	-				-0.3
3,677,186	-				-2.2
3,677,186	-				-0.3
3,677,211	+				-0.5
3,677,212	-				+1.2
3,677,221	+				+1.0
3,677,221	+				-0.1
3,677,221	+				+0.7
3,677,221	+				-0.7
3,677,221	+				+0.8
3,677,221	+				+2.0
3,677,222	-				-0.1
3,677,222	-				+0.0
3,677,222	-				+0.2
3,677,222	-				-0.6
3,677,287	+		IAI47_17365	0.16	-1.4
3,677,287	+		IAI47_17365	0.16	+0.3
3,677,288	-		IAI47_17365	0.16	-0.5
3,677,317	-		IAI47_17365	0.21	-1.9
3,677,376	+		IAI47_17365	0.32	+0.7
3,677,376	+		IAI47_17365	0.32	-1.6
3,677,376	+		IAI47_17365	0.32	+1.3
3,677,376	+		IAI47_17365	0.32	-2.0
3,677,377	-		IAI47_17365	0.32	-1.8
3,677,474	+		IAI47_17365	0.50	-2.2
3,677,474	+		IAI47_17365	0.50	-1.4
3,677,475	-		IAI47_17365	0.50	-1.3
3,677,475	-		IAI47_17365	0.50	-0.7
3,677,494	-		IAI47_17365	0.54	-0.1
3,677,494	-		IAI47_17365	0.54	-0.2
3,677,547	+		IAI47_17365	0.64	-0.9
3,677,547	+		IAI47_17365	0.64	+2.5
3,677,548	-		IAI47_17365	0.64	-0.2
3,677,631	+		IAI47_17365	0.79	+0.1
3,677,632	-		IAI47_17365	0.79	-0.6
3,677,632	-		IAI47_17365	0.79	-0.1
3,677,632	-		IAI47_17365	0.79	-0.2
3,677,632	-		IAI47_17365	0.79	-1.3
3,677,708	-				-0.3
3,677,708	-				+0.5
3,677,736	+				+0.1
3,677,736	+				-0.6
3,677,737	-				+1.9
3,677,737	-				+0.2
3,677,737	-				+0.0
3,677,740	+				+1.4
3,677,740	+				+1.0
3,677,740	+				+1.1
3,677,740	+				+1.3
3,677,740	+				+0.6
3,677,740	+				+1.2
3,677,740	+				-1.8
3,677,740	+				-1.0
3,677,740	+				+0.7
3,677,740	+				-1.8
3,677,740	+				+0.5
3,677,740	+				-1.1
3,677,740	+				-0.2
3,677,740	+				-0.3
3,677,740	+				-0.6
3,677,740	+				-0.1
3,677,740	+				+1.1
3,677,740	+				-0.1
3,677,740	+				-0.5
3,677,741	-				-0.4
3,677,741	-				+0.3
3,677,741	-				+0.8
3,677,741	-				+0.6
3,677,741	-				-1.1
3,677,741	-				-1.3
3,677,741	-				-0.4
3,677,741	-				-1.0
3,677,741	-				+1.0
3,677,741	-				+0.5
3,677,787	+				+0.7
3,677,787	+				+0.7
3,677,787	+				+1.3
3,677,787	+				+0.3
3,677,788	-				-1.8
3,677,788	-				-1.1
3,677,788	-				-1.3
3,677,788	-				+0.8
3,677,788	-				+1.0
3,677,788	-				-0.7
3,677,790	+				-0.2
3,677,790	+				+0.4
3,677,790	+				+1.3
3,677,806	+				+0.5
3,677,807	-				+0.4
3,677,807	-				-1.6
3,677,836	+		IAI47_17370	0.10	+0.6
3,677,836	+		IAI47_17370	0.10	-0.4
3,677,836	+		IAI47_17370	0.10	-0.0
3,677,836	+		IAI47_17370	0.10	-1.0
3,677,836	+		IAI47_17370	0.10	-0.9
3,677,836	+		IAI47_17370	0.10	+2.0
3,677,837	-		IAI47_17370	0.10	-2.2
3,677,837	-		IAI47_17370	0.10	+2.2
3,677,837	-		IAI47_17370	0.10	+0.1
3,677,837	-		IAI47_17370	0.10	+0.6
3,677,837	-		IAI47_17370	0.10	+1.0
3,677,837	-		IAI47_17370	0.10	+0.7
3,677,837	-		IAI47_17370	0.10	+0.1
3,677,855	+		IAI47_17370	0.12	-0.3
3,677,855	+		IAI47_17370	0.12	-0.4
3,677,867	-		IAI47_17370	0.13	+0.9
3,677,867	-		IAI47_17370	0.13	+0.0
3,677,867	-		IAI47_17370	0.13	-2.3
3,677,961	+		IAI47_17370	0.22	+0.0
3,677,962	-		IAI47_17370	0.22	-1.4
3,677,962	-		IAI47_17370	0.22	+0.0
3,677,991	+		IAI47_17370	0.25	+1.1
3,677,991	+		IAI47_17370	0.25	+0.0
3,677,992	-		IAI47_17370	0.25	+1.6
3,678,034	+		IAI47_17370	0.29	-0.3
3,678,034	+		IAI47_17370	0.29	-1.3
3,678,034	+		IAI47_17370	0.29	-0.2
3,678,034	+		IAI47_17370	0.29	+0.3
3,678,035	-		IAI47_17370	0.29	+0.0
3,678,035	-		IAI47_17370	0.29	-0.7
3,678,035	-		IAI47_17370	0.29	+0.2
3,678,035	-		IAI47_17370	0.29	-1.2
3,678,035	-		IAI47_17370	0.29	+0.7
3,678,035	-		IAI47_17370	0.29	-1.4
3,678,035	-		IAI47_17370	0.29	-1.4
3,678,035	-		IAI47_17370	0.29	+1.0
3,678,100	+		IAI47_17370	0.35	-0.7
3,678,122	-		IAI47_17370	0.37	+0.4