Strain Fitness in Pantoea sp. MT58 around IAI47_14365

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
3,033,897	+		IAI47_14360	0.64	-0.9
3,033,898	-		IAI47_14360	0.64	+0.5
3,033,898	-		IAI47_14360	0.64	+0.8
3,033,971	-		IAI47_14360	0.67	-0.1
3,033,971	-		IAI47_14360	0.67	+0.1
3,033,971	-		IAI47_14360	0.67	+0.6
3,034,141	+		IAI47_14360	0.74	-1.9
3,034,141	+		IAI47_14360	0.74	+0.1
3,034,141	+		IAI47_14360	0.74	-0.1
3,034,142	-		IAI47_14360	0.74	-0.3
3,034,142	-		IAI47_14360	0.74	-0.4
3,034,142	-		IAI47_14360	0.74	+0.3
3,034,142	-		IAI47_14360	0.74	+0.3
3,034,142	-		IAI47_14360	0.74	-0.3
3,034,142	-		IAI47_14360	0.74	-0.5
3,034,142	-		IAI47_14360	0.74	-0.2
3,034,142	-		IAI47_14360	0.74	-0.4
3,034,178	-		IAI47_14360	0.76	+1.2
3,034,238	+		IAI47_14360	0.78	+0.2
3,034,238	+		IAI47_14360	0.78	-1.6
3,034,239	-		IAI47_14360	0.78	-0.4
3,034,239	-		IAI47_14360	0.78	-1.5
3,034,272	-		IAI47_14360	0.80	-0.2
3,034,296	+		IAI47_14360	0.81	-0.9
3,034,296	+		IAI47_14360	0.81	-0.8
3,034,297	-		IAI47_14360	0.81	-0.4
3,034,297	-		IAI47_14360	0.81	+1.8
3,034,297	-		IAI47_14360	0.81	+0.3
3,034,340	+		IAI47_14360	0.82	+1.1
3,034,340	+		IAI47_14360	0.82	-0.9
3,034,341	-		IAI47_14360	0.82	-0.4
3,034,431	+		IAI47_14360	0.86	-0.2
3,034,431	+		IAI47_14360	0.86	+0.1
3,034,432	-		IAI47_14360	0.86	+0.1
3,034,432	-		IAI47_14360	0.86	-2.1
3,034,592	+				-1.2
3,034,592	+				+0.3
3,034,593	-				-0.9
3,034,616	+				-0.9
3,034,617	-				-1.3
3,034,681	-				-0.8
3,034,897	+		IAI47_14365	0.20	-0.7
3,034,897	+		IAI47_14365	0.20	+0.2
3,034,898	-		IAI47_14365	0.20	-1.3
3,034,898	-		IAI47_14365	0.20	+0.0
3,034,898	-		IAI47_14365	0.20	+1.6
3,034,912	+		IAI47_14365	0.22	-3.1
3,034,912	+		IAI47_14365	0.22	-0.5
3,034,913	-		IAI47_14365	0.22	+0.5
3,035,052	-		IAI47_14365	0.42	-2.1
3,035,158	+		IAI47_14365	0.57	+0.4
3,035,158	+		IAI47_14365	0.57	+1.1
3,035,158	+		IAI47_14365	0.57	-1.6
3,035,159	-		IAI47_14365	0.58	-0.8
3,035,159	-		IAI47_14365	0.58	+0.4
3,035,159	-		IAI47_14365	0.58	+0.4
3,035,410	+				+1.2
3,035,411	-				+1.1
3,035,411	-				+0.8
3,035,413	+				+1.1
3,035,413	+				-0.8
3,035,413	+				-0.3
3,035,414	-				+0.2
3,035,414	-				+1.1
3,035,451	-				+0.1
3,035,463	+				-0.1
3,035,463	+				+0.1
3,035,503	+		IAI47_14370	0.14	-0.7
3,035,503	+		IAI47_14370	0.14	+1.1
3,035,504	-		IAI47_14370	0.14	+0.4
3,035,582	-		IAI47_14370	0.26	-2.4
3,035,632	+		IAI47_14370	0.34	-1.5
3,035,632	+		IAI47_14370	0.34	+0.1
3,035,632	+		IAI47_14370	0.34	+1.1
3,035,632	+		IAI47_14370	0.34	-1.5
3,035,633	-		IAI47_14370	0.34	-0.5
3,035,633	-		IAI47_14370	0.34	-0.3
3,035,667	+		IAI47_14370	0.40	-1.1
3,035,680	+		IAI47_14370	0.42	-0.5
3,035,680	+		IAI47_14370	0.42	+1.1
3,035,680	+		IAI47_14370	0.42	+0.4
3,035,680	+		IAI47_14370	0.42	+0.5
3,035,681	-		IAI47_14370	0.42	+0.1
3,035,681	-		IAI47_14370	0.42	-1.1
3,035,681	-		IAI47_14370	0.42	+0.1
3,035,681	-		IAI47_14370	0.42	+0.9
3,035,681	-		IAI47_14370	0.42	-0.5
3,035,697	+		IAI47_14370	0.45	+0.5
3,035,697	+		IAI47_14370	0.45	+0.4
3,035,698	-		IAI47_14370	0.45	-2.5
3,035,747	-		IAI47_14370	0.53	-3.1
3,035,782	+		IAI47_14370	0.58	+0.2
3,035,782	+		IAI47_14370	0.58	+0.5
3,035,783	-		IAI47_14370	0.58	+0.4
3,035,783	-		IAI47_14370	0.58	-0.5
3,035,783	-		IAI47_14370	0.58	-0.1
3,035,834	+		IAI47_14370	0.67	-0.4
3,035,834	+		IAI47_14370	0.67	+0.5
3,035,834	+		IAI47_14370	0.67	+0.1
3,035,835	-		IAI47_14370	0.67	-1.1
3,035,835	-		IAI47_14370	0.67	+1.4
3,035,835	-		IAI47_14370	0.67	+0.7
3,035,835	-		IAI47_14370	0.67	-0.4
3,035,847	-		IAI47_14370	0.69	-0.9
3,035,847	-		IAI47_14370	0.69	-0.1
3,035,870	+		IAI47_14370	0.72	+0.4
3,035,870	+		IAI47_14370	0.72	+0.1
3,035,871	-		IAI47_14370	0.72	-0.5
3,035,871	-		IAI47_14370	0.72	-0.5
3,035,871	-		IAI47_14370	0.72	-0.1
3,035,871	-		IAI47_14370	0.72	+0.5
3,035,918	-		IAI47_14370	0.80	-0.3
3,035,930	+		IAI47_14370	0.82	-0.6
3,035,930	+		IAI47_14370	0.82	+0.4
3,035,931	-		IAI47_14370	0.82	-0.3
3,035,931	-		IAI47_14370	0.82	-0.3
3,035,931	-		IAI47_14370	0.82	+0.1
3,035,962	+		IAI47_14370	0.87	-0.9
3,035,962	+		IAI47_14370	0.87	+1.1
3,035,963	-		IAI47_14370	0.87	+0.1
3,035,963	-		IAI47_14370	0.87	-0.9
3,035,963	-		IAI47_14370	0.87	-1.3
3,035,992	+				+0.8
3,036,004	-				-0.7
3,036,027	+				+1.1
3,036,027	+				+0.4
3,036,027	+				+1.4
3,036,028	-				-0.5
3,036,028	-				-0.7
3,036,032	-				-0.4
3,036,063	-				-1.3
3,036,071	+				+1.1
3,036,071	+				-0.2
3,036,071	+				-1.3
3,036,071	+				+0.2
3,036,071	+				-1.4
3,036,072	-				-1.2
3,036,072	-				+0.1
3,036,072	-				+1.1
3,036,085	+				-0.3
3,036,085	+				+0.4
3,036,091	+				+0.6
3,036,091	+				+0.6
3,036,091	+				+0.5
3,036,091	+				+0.6
3,036,091	+				-0.3
3,036,091	+				+0.4
3,036,091	+				+1.1
3,036,092	-				-0.9
3,036,092	-				+0.8
3,036,092	-				+0.5
3,036,092	-				+0.1
3,036,095	-				-1.5
3,036,222	+		IAI47_14375	0.19	-0.2
3,036,222	+		IAI47_14375	0.19	-0.3
3,036,223	-		IAI47_14375	0.19	+1.6
3,036,273	+		IAI47_14375	0.26	+0.8
3,036,310	+		IAI47_14375	0.30	-0.6
3,036,310	+		IAI47_14375	0.30	-0.1
3,036,332	+		IAI47_14375	0.33	-0.0
3,036,347	-		IAI47_14375	0.35	-1.5
3,036,399	+		IAI47_14375	0.42	+0.5
3,036,399	+		IAI47_14375	0.42	+0.1
3,036,399	+		IAI47_14375	0.42	+1.1
3,036,399	+		IAI47_14375	0.42	+1.3
3,036,399	+		IAI47_14375	0.42	+0.7
3,036,400	-		IAI47_14375	0.42	-0.2
3,036,409	-		IAI47_14375	0.43	+0.5
3,036,409	-		IAI47_14375	0.43	-0.3
3,036,423	+		IAI47_14375	0.45	+0.9
3,036,423	+		IAI47_14375	0.45	-0.8
3,036,423	+		IAI47_14375	0.45	-1.3
3,036,423	+		IAI47_14375	0.45	+0.4
3,036,424	-		IAI47_14375	0.45	-0.8
3,036,424	-		IAI47_14375	0.45	+0.5
3,036,432	+		IAI47_14375	0.46	-1.3
3,036,432	+		IAI47_14375	0.46	-1.2
3,036,432	+		IAI47_14375	0.46	+0.7
3,036,432	+		IAI47_14375	0.46	-1.5
3,036,432	+		IAI47_14375	0.46	+2.1
3,036,433	-		IAI47_14375	0.46	-0.4