Strain Fitness in Pantoea sp. MT58 around IAI47_13075

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
2,761,283	+		IAI47_13060	0.87	-1.0
2,761,284	-		IAI47_13060	0.87	-0.9
2,761,326	-				-0.8
2,761,326	-				+0.4
2,761,356	+				+0.1
2,761,356	+				+0.2
2,761,357	-				-0.5
2,761,357	-				-0.2
2,761,376	+				+0.7
2,761,377	-				+0.9
2,761,394	+				+1.6
2,761,395	-				+0.0
2,761,456	+		IAI47_13065	0.25	-0.8
2,761,456	+		IAI47_13065	0.25	-0.4
2,761,456	+		IAI47_13065	0.25	+1.0
2,761,457	-		IAI47_13065	0.25	-1.6
2,761,633	+				+0.0
2,761,633	+				-2.5
2,761,634	-				-0.1
2,761,634	-				-0.5
2,761,660	+				+0.6
2,761,668	+				-1.6
2,761,669	-				-1.7
2,761,669	-				-0.2
2,761,682	+				-2.5
2,761,683	-				-0.1
2,761,683	-				+0.2
2,761,683	-				+0.0
2,761,683	-				-2.2
2,761,712	+				+0.0
2,761,712	+				+1.0
2,761,713	-				-1.3
2,761,713	-				+0.1
2,761,714	+				-0.3
2,761,714	+				+1.2
2,761,714	+				+0.3
2,761,715	-				-0.6
2,761,715	-				+0.2
2,761,715	-				-0.4
2,761,715	-				-2.2
2,761,715	-				-1.3
2,761,715	-				-2.5
2,761,715	-				-1.8
2,761,715	-				+0.0
2,761,771	+				-0.6
2,761,772	-				-0.6
2,761,772	-				-0.5
2,761,790	+				+0.3
2,761,790	+				-0.1
2,761,791	-				-1.0
2,761,791	-				-2.3
2,761,791	-				-0.2
2,761,814	-				-0.3
2,761,814	-				+0.9
2,761,814	-				-1.3
2,761,820	+				+1.3
2,761,866	+				+0.8
2,761,866	+				-0.2
2,761,867	-				+1.0
2,761,867	-				+0.3
2,761,867	-				-1.3
2,761,875	+				+1.7
2,761,875	+				+1.0
2,761,876	-				-1.1
2,761,876	-				+0.2
2,761,876	-				+0.4
2,761,878	+				+0.0
2,761,899	+				+0.1
2,761,899	+				-0.4
2,761,899	+				+0.2
2,761,900	-				-2.5
2,761,900	-				-1.6
2,761,900	-				+0.6
2,761,900	-				+0.6
2,761,936	+		IAI47_13070	0.14	+1.0
2,761,937	-		IAI47_13070	0.14	-1.0
2,761,937	-		IAI47_13070	0.14	+0.5
2,761,937	-		IAI47_13070	0.14	-1.2
2,761,937	-		IAI47_13070	0.14	+0.1
2,761,937	-		IAI47_13070	0.14	-0.3
2,761,992	+		IAI47_13070	0.35	-1.3
2,761,992	+		IAI47_13070	0.35	+0.5
2,761,992	+		IAI47_13070	0.35	+0.0
2,761,993	-		IAI47_13070	0.35	-1.0
2,761,993	-		IAI47_13070	0.35	+2.0
2,761,993	-		IAI47_13070	0.35	-1.8
2,761,993	-		IAI47_13070	0.35	+0.4
2,761,996	+		IAI47_13070	0.36	+0.2
2,761,996	+		IAI47_13070	0.36	-1.4
2,762,002	+		IAI47_13070	0.39	-0.8
2,762,002	+		IAI47_13070	0.39	-0.1
2,762,002	+		IAI47_13070	0.39	-0.6
2,762,003	-		IAI47_13070	0.39	+1.4
2,762,003	-		IAI47_13070	0.39	-1.1
2,762,003	-		IAI47_13070	0.39	+1.0
2,762,003	-		IAI47_13070	0.39	-0.4
2,762,003	-		IAI47_13070	0.39	+0.6
2,762,003	-		IAI47_13070	0.39	+0.3
2,762,010	+		IAI47_13070	0.42	-0.4
2,762,010	+		IAI47_13070	0.42	-0.8
2,762,010	+		IAI47_13070	0.42	-0.3
2,762,010	+		IAI47_13070	0.42	+2.0
2,762,010	+		IAI47_13070	0.42	+0.1
2,762,011	-		IAI47_13070	0.42	-2.2
2,762,011	-		IAI47_13070	0.42	+0.3
2,762,011	-		IAI47_13070	0.42	+0.1
2,762,011	-		IAI47_13070	0.42	-1.2
2,762,013	+		IAI47_13070	0.43	+0.5
2,762,013	+		IAI47_13070	0.43	-0.2
2,762,028	+		IAI47_13070	0.48	+0.1
2,762,028	+		IAI47_13070	0.48	+0.0
2,762,103	+		IAI47_13070	0.77	+0.6
2,762,103	+		IAI47_13070	0.77	+0.2
2,762,103	+		IAI47_13070	0.77	+1.0
2,762,136	+		IAI47_13070	0.89	+0.3
2,762,136	+		IAI47_13070	0.89	+0.7
2,762,137	-				+0.3
2,762,137	-				-1.3
2,762,137	-				-1.5
2,762,137	-				-2.0
2,762,357	-		IAI47_13075	0.29	-0.3
2,762,365	+		IAI47_13075	0.31	+1.0
2,762,366	-		IAI47_13075	0.31	+0.4
2,762,366	-		IAI47_13075	0.31	-0.3
2,762,366	-		IAI47_13075	0.31	+0.8
2,762,382	-		IAI47_13075	0.36	+0.5
2,762,382	-		IAI47_13075	0.36	+0.4
2,762,482	+		IAI47_13075	0.63	+0.3
2,762,482	+		IAI47_13075	0.63	+0.0
2,762,482	+		IAI47_13075	0.63	+0.0
2,762,482	+		IAI47_13075	0.63	+2.0
2,762,482	+		IAI47_13075	0.63	+1.5
2,762,483	-		IAI47_13075	0.63	-1.2
2,762,483	-		IAI47_13075	0.63	+0.5
2,762,483	-		IAI47_13075	0.63	+1.0
2,762,483	-		IAI47_13075	0.63	+2.0
2,762,483	-		IAI47_13075	0.63	-1.4
2,762,492	+		IAI47_13075	0.66	+0.0
2,762,493	-		IAI47_13075	0.66	+0.5
2,762,546	-		IAI47_13075	0.80	-1.0
2,762,563	+		IAI47_13075	0.85	-0.2
2,762,563	+		IAI47_13075	0.85	+1.0
2,762,563	+		IAI47_13075	0.85	+0.7
2,762,563	+		IAI47_13075	0.85	+1.6
2,762,564	-		IAI47_13075	0.85	-1.3
2,762,564	-		IAI47_13075	0.85	-0.2
2,762,565	+		IAI47_13075	0.86	+2.0
2,762,565	+		IAI47_13075	0.86	-1.8
2,762,565	+		IAI47_13075	0.86	+1.7
2,762,565	+		IAI47_13075	0.86	-0.0
2,762,565	+		IAI47_13075	0.86	+0.5
2,762,565	+		IAI47_13075	0.86	+1.4
2,762,565	+		IAI47_13075	0.86	-1.3
2,762,565	+		IAI47_13075	0.86	-1.3
2,762,566	-		IAI47_13075	0.86	+2.0
2,762,566	-		IAI47_13075	0.86	+1.6
2,762,566	-		IAI47_13075	0.86	+0.6
2,762,566	-		IAI47_13075	0.86	-1.1
2,762,566	-		IAI47_13075	0.86	+0.4
2,762,566	-		IAI47_13075	0.86	+0.2
2,762,566	-		IAI47_13075	0.86	-0.8
2,762,566	-		IAI47_13075	0.86	+1.1
2,762,601	+				-1.2
2,762,601	+				+0.8
2,762,602	-				+0.3
2,762,602	-				+1.0
2,762,602	-				-0.6
2,762,617	+				-0.7
2,762,617	+				+0.3
2,762,617	+				-0.7
2,762,617	+				+1.2
2,762,617	+				+0.0
2,762,618	-				-0.6
2,762,618	-				+0.6
2,762,620	+				-0.9
2,762,620	+				+2.1
2,762,621	-				+0.2
2,762,621	-				-0.3
2,762,621	-				-1.3
2,762,650	+				-1.4
2,762,651	-				-0.1
2,762,687	-				+0.2
2,762,742	+				-0.3
2,762,742	+				-1.1
2,762,742	+				-0.3
2,762,752	+				-0.2
2,762,752	+				+0.7
2,762,752	+				+1.7
2,762,753	-				+0.5
2,762,753	-				-1.9
2,762,757	+				-0.6
2,762,758	-				-0.7
2,762,792	+				+1.1
2,762,838	-				-1.0
2,762,847	+				-1.5
2,762,881	+				-1.3
2,762,926	-				-1.0
2,762,926	-				-1.6
2,762,938	-				+0.8
2,762,959	+				-0.3
2,762,959	+				+0.3
2,763,003	+				+0.0
2,763,004	-				-0.1
2,763,004	-				+0.7
2,763,004	-				+0.0
2,763,004	-				+0.0
2,763,006	+				+2.1
2,763,006	+				+1.2
2,763,006	+				-2.6
2,763,007	-				+0.0
2,763,007	-				+0.5
2,763,007	-				-1.0
2,763,021	+				-1.1
2,763,021	+				-0.7
2,763,021	+				+0.3
2,763,021	+				-0.2
2,763,021	+				+0.1
2,763,022	-				-0.1
2,763,022	-				+1.0
2,763,022	-				+0.9
2,763,025	-				-0.8
2,763,073	+		IAI47_13080	0.12	-0.4
2,763,073	+		IAI47_13080	0.12	+1.4
2,763,073	+		IAI47_13080	0.12	-1.0
2,763,073	+		IAI47_13080	0.12	+0.3
2,763,074	-		IAI47_13080	0.12	+0.7
2,763,074	-		IAI47_13080	0.12	+0.7
2,763,074	-		IAI47_13080	0.12	-0.3
2,763,074	-		IAI47_13080	0.12	-2.8
2,763,082	+		IAI47_13080	0.12	+0.9
2,763,149	+		IAI47_13080	0.16	+0.1
2,763,227	-		IAI47_13080	0.21	+0.5
2,763,370	-		IAI47_13080	0.29	-0.9
2,763,374	+		IAI47_13080	0.29	-0.2
2,763,375	-		IAI47_13080	0.30	+1.4
2,763,413	+		IAI47_13080	0.32	-0.1
2,763,413	+		IAI47_13080	0.32	-2.1
2,763,590	+		IAI47_13080	0.42	+0.1
2,763,590	+		IAI47_13080	0.42	+1.2
2,763,591	-		IAI47_13080	0.42	+0.0
2,763,591	-		IAI47_13080	0.42	+0.4
2,763,591	-		IAI47_13080	0.42	-0.8
2,763,591	-		IAI47_13080	0.42	+0.5
2,763,591	-		IAI47_13080	0.42	-0.3
2,763,591	-		IAI47_13080	0.42	+1.0
2,763,591	-		IAI47_13080	0.42	-0.7
2,763,591	-		IAI47_13080	0.42	+0.1
2,763,608	+		IAI47_13080	0.43	-1.4
2,763,608	+		IAI47_13080	0.43	+1.5
2,763,608	+		IAI47_13080	0.43	+1.2
2,763,608	+		IAI47_13080	0.43	-0.2
2,763,608	+		IAI47_13080	0.43	-1.1
2,763,608	+		IAI47_13080	0.43	-0.2
2,763,609	-		IAI47_13080	0.43	+0.0
2,763,609	-		IAI47_13080	0.43	+0.6
2,763,609	-		IAI47_13080	0.43	-0.6
2,763,609	-		IAI47_13080	0.43	-1.8
2,763,609	-		IAI47_13080	0.43	+1.0