Strain Fitness in Pantoea sp. MT58 around IAI47_07770

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
1,645,030	+		IAI47_07765	0.15	+0.4
1,645,030	+		IAI47_07765	0.15	+1.0
1,645,032	+		IAI47_07765	0.15	+2.0
1,645,032	+		IAI47_07765	0.15	-0.5
1,645,032	+		IAI47_07765	0.15	+1.0
1,645,032	+		IAI47_07765	0.15	+0.2
1,645,032	+		IAI47_07765	0.15	-0.6
1,645,033	-		IAI47_07765	0.15	-0.6
1,645,033	-		IAI47_07765	0.15	+1.3
1,645,033	-		IAI47_07765	0.15	-0.3
1,645,033	-		IAI47_07765	0.15	+1.0
1,645,033	-		IAI47_07765	0.15	-1.0
1,645,061	+		IAI47_07765	0.18	-0.4
1,645,062	-		IAI47_07765	0.18	-0.7
1,645,194	+		IAI47_07765	0.30	-0.6
1,645,194	+		IAI47_07765	0.30	-1.0
1,645,194	+		IAI47_07765	0.30	+0.3
1,645,195	-		IAI47_07765	0.30	+0.8
1,645,195	-		IAI47_07765	0.30	-1.7
1,645,195	-		IAI47_07765	0.30	+1.0
1,645,197	-		IAI47_07765	0.30	+0.3
1,645,197	-		IAI47_07765	0.30	-0.0
1,645,233	+		IAI47_07765	0.34	+0.7
1,645,233	+		IAI47_07765	0.34	+0.1
1,645,233	+		IAI47_07765	0.34	+1.1
1,645,233	+		IAI47_07765	0.34	-0.0
1,645,233	+		IAI47_07765	0.34	+1.5
1,645,233	+		IAI47_07765	0.34	-0.5
1,645,234	-		IAI47_07765	0.34	+0.2
1,645,234	-		IAI47_07765	0.34	-0.1
1,645,234	-		IAI47_07765	0.34	+0.5
1,645,234	-		IAI47_07765	0.34	-0.1
1,645,239	+		IAI47_07765	0.34	+0.4
1,645,239	+		IAI47_07765	0.34	+0.4
1,645,239	+		IAI47_07765	0.34	+0.4
1,645,239	+		IAI47_07765	0.34	-1.0
1,645,239	+		IAI47_07765	0.34	-0.3
1,645,240	-		IAI47_07765	0.34	+1.2
1,645,240	-		IAI47_07765	0.34	-0.6
1,645,240	-		IAI47_07765	0.34	+1.8
1,645,240	-		IAI47_07765	0.34	-0.7
1,645,240	-		IAI47_07765	0.34	+0.4
1,645,404	-		IAI47_07765	0.50	-1.0
1,645,404	-		IAI47_07765	0.50	+2.0
1,645,557	+		IAI47_07765	0.64	+1.3
1,645,924	-				+0.1
1,645,957	+				+2.8
1,645,959	+				-0.9
1,645,959	+				-0.4
1,645,959	+				-0.6
1,645,960	-				-0.1
1,645,960	-				+0.3
1,645,960	-				+0.5
1,645,960	-				-1.1
1,645,969	+				-0.1
1,645,970	-				-0.2
1,645,970	-				-0.2
1,646,074	+		IAI47_07770	0.16	-0.1
1,646,086	-		IAI47_07770	0.17	-1.2
1,646,183	+		IAI47_07770	0.29	-1.3
1,646,183	+		IAI47_07770	0.29	-1.7
1,646,183	+		IAI47_07770	0.29	-0.4
1,646,183	+		IAI47_07770	0.29	-0.9
1,646,184	-		IAI47_07770	0.29	-0.7
1,646,303	+		IAI47_07770	0.43	-1.1
1,646,386	+		IAI47_07770	0.53	+0.2
1,646,387	-		IAI47_07770	0.53	-1.3
1,646,387	-		IAI47_07770	0.53	-0.1
1,646,410	+		IAI47_07770	0.55	+2.6
1,646,410	+		IAI47_07770	0.55	+2.0
1,646,411	-		IAI47_07770	0.56	-0.0
1,646,411	-		IAI47_07770	0.56	-2.0
1,646,418	+		IAI47_07770	0.56	+0.8
1,646,419	-		IAI47_07770	0.57	-0.1
1,646,419	-		IAI47_07770	0.57	+1.3
1,646,437	-		IAI47_07770	0.59	-0.6
1,646,449	+		IAI47_07770	0.60	-1.5
1,646,449	+		IAI47_07770	0.60	+0.4
1,646,449	+		IAI47_07770	0.60	+0.6
1,646,449	+		IAI47_07770	0.60	-0.8
1,646,449	+		IAI47_07770	0.60	-0.4
1,646,449	+		IAI47_07770	0.60	-1.0
1,646,450	-		IAI47_07770	0.60	+0.5
1,646,450	-		IAI47_07770	0.60	+0.3
1,646,450	-		IAI47_07770	0.60	+1.5
1,646,450	-		IAI47_07770	0.60	+0.3
1,646,450	-		IAI47_07770	0.60	-1.8
1,646,450	-		IAI47_07770	0.60	-1.2
1,646,450	-		IAI47_07770	0.60	+1.5
1,646,450	-		IAI47_07770	0.60	-2.2
1,646,479	+		IAI47_07770	0.64	-0.0
1,646,479	+		IAI47_07770	0.64	-0.1
1,646,480	-		IAI47_07770	0.64	-0.3
1,646,578	+		IAI47_07770	0.75	-0.5
1,646,579	-		IAI47_07770	0.75	+1.0
1,646,579	-		IAI47_07770	0.75	+0.1
1,646,579	-		IAI47_07770	0.75	+0.7
1,646,593	+		IAI47_07770	0.77	-1.1
1,646,593	+		IAI47_07770	0.77	-0.3
1,646,594	-		IAI47_07770	0.77	-0.0
1,646,595	+		IAI47_07770	0.77	-2.3
1,646,686	+		IAI47_07770	0.88	-2.7
1,646,686	+		IAI47_07770	0.88	-1.4
1,646,686	+		IAI47_07770	0.88	+0.4
1,646,687	-		IAI47_07770	0.88	+0.7
1,646,687	-		IAI47_07770	0.88	-0.8
1,646,687	-		IAI47_07770	0.88	-0.4
1,646,687	-		IAI47_07770	0.88	-0.0
1,646,825	+				-0.0
1,646,825	+				+0.4
1,646,825	+				+0.3
1,646,826	-				+0.4
1,646,826	-				+1.1
1,646,826	-				-0.8
1,646,826	-				+0.6
1,646,880	+		IAI47_07775	0.14	-1.0
1,646,880	+		IAI47_07775	0.14	-1.8
1,646,881	-		IAI47_07775	0.14	-0.5
1,646,881	-		IAI47_07775	0.14	-1.8
1,646,912	-		IAI47_07775	0.18	-0.7
1,646,972	+		IAI47_07775	0.26	-0.2
1,646,973	-		IAI47_07775	0.26	+0.1
1,646,991	-		IAI47_07775	0.28	-0.9
1,647,134	+		IAI47_07775	0.47	+0.5
1,647,134	+		IAI47_07775	0.47	+0.6
1,647,134	+		IAI47_07775	0.47	+0.2
1,647,287	-		IAI47_07775	0.67	-2.6
1,647,287	-		IAI47_07775	0.67	-1.0
1,647,334	-		IAI47_07775	0.73	-0.7
1,647,503	+				-0.7
1,647,503	+				+1.0
1,647,503	+				-0.1
1,647,503	+				-2.3
1,647,504	-				-0.0
1,647,504	-				-0.0
1,647,504	-				+2.0
1,647,536	+				-1.2
1,647,536	+				-0.6
1,647,580	+				-1.2
1,647,581	-				+0.1
1,647,670	-		IAI47_07780	0.18	-0.9
1,647,670	-		IAI47_07780	0.18	-0.8
1,647,728	+		IAI47_07780	0.26	+0.3
1,647,729	-		IAI47_07780	0.27	+0.6
1,647,729	-		IAI47_07780	0.27	-0.4
1,647,729	-		IAI47_07780	0.27	-0.6