Strain Fitness in Pantoea sp. MT58 around IAI47_06400

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
1,302,188	+				+1.0
1,302,313	-		IAI47_06390	0.74	+1.0
1,302,313	-		IAI47_06390	0.74	-2.0
1,302,422	+		IAI47_06390	0.85	+0.4
1,302,423	-		IAI47_06390	0.85	-0.0
1,302,423	-		IAI47_06390	0.85	-0.0
1,302,592	+				-0.0
1,302,601	-				-0.0
1,302,625	+				+1.0
1,302,626	-				+1.0
1,302,799	+		IAI47_06395	0.41	-0.0
1,302,971	+		IAI47_06395	0.72	+2.0
1,302,971	+		IAI47_06395	0.72	-0.4
1,302,971	+		IAI47_06395	0.72	-0.3
1,303,043	-				+2.6
1,303,063	+		IAI47_06395	0.89	-2.0
1,303,093	+				+1.6
1,303,110	+				-1.2
1,303,110	+				+1.1
1,303,110	+				+0.1
1,303,110	+				-0.6
1,303,110	+				-0.6
1,303,113	+				+0.3
1,303,113	+				+0.5
1,303,113	+				+0.1
1,303,118	+				-0.2
1,303,146	+				-1.6
1,303,275	+		IAI47_06400	0.26	-1.0
1,303,276	-		IAI47_06400	0.26	-1.7
1,303,343	+		IAI47_06400	0.38	-0.6
1,303,456	-		IAI47_06400	0.59	-1.3
1,303,539	+		IAI47_06400	0.74	-0.3
1,303,539	+		IAI47_06400	0.74	+0.0
1,303,540	-		IAI47_06400	0.74	+0.6
1,303,565	+		IAI47_06400	0.79	+0.7
1,303,566	-		IAI47_06400	0.79	-0.6
1,303,643	+				-0.6
1,303,689	+				+0.4
1,303,750	-		IAI47_06405	0.23	+0.6
1,303,809	+		IAI47_06405	0.43	-1.8
1,303,809	+		IAI47_06405	0.43	-1.6
1,303,809	+		IAI47_06405	0.43	-1.0
1,303,832	+		IAI47_06405	0.50	+0.0
1,303,862	+		IAI47_06405	0.60	+1.0
1,303,862	+		IAI47_06405	0.60	+0.3
1,303,862	+		IAI47_06405	0.60	-1.0
1,303,862	+		IAI47_06405	0.60	+0.4
1,303,863	-		IAI47_06405	0.61	-2.3
1,303,863	-		IAI47_06405	0.61	-1.6
1,303,863	-		IAI47_06405	0.61	+1.0
1,303,863	-		IAI47_06405	0.61	+0.2
1,303,863	-		IAI47_06405	0.61	-1.3
1,303,863	-		IAI47_06405	0.61	-1.0
1,303,928	+		IAI47_06405	0.82	+1.0
1,303,957	+				-0.6
1,303,957	+				-0.4
1,303,959	-				-0.8
1,303,995	-				-1.0
1,303,995	-				-1.3
1,304,030	+				+0.4
1,304,075	+				+1.0
1,304,076	-				-1.8
1,304,079	+				-1.6
1,304,079	+				+1.7
1,304,080	-				-1.3
1,304,109	+				-1.3
1,304,156	-				+1.4
1,304,156	-				+1.0
1,304,156	-				+0.0
1,304,277	+		IAI47_06410	0.16	-1.3
1,304,278	-		IAI47_06410	0.16	-0.6
1,304,278	-		IAI47_06410	0.16	-1.2
1,304,295	+		IAI47_06410	0.17	-1.6
1,304,295	+		IAI47_06410	0.17	+1.0
1,304,295	+		IAI47_06410	0.17	-2.2
1,304,314	+		IAI47_06410	0.18	+0.4
1,304,395	+		IAI47_06410	0.23	-2.0
1,304,395	+		IAI47_06410	0.23	-1.0
1,304,396	-		IAI47_06410	0.23	-0.6
1,304,396	-		IAI47_06410	0.23	-0.6
1,304,446	+		IAI47_06410	0.25	+0.0
1,304,446	+		IAI47_06410	0.25	+0.6
1,304,450	-		IAI47_06410	0.26	-1.0
1,304,451	+		IAI47_06410	0.26	+0.8
1,304,451	+		IAI47_06410	0.26	-1.6
1,304,452	-		IAI47_06410	0.26	-0.6
1,304,490	+		IAI47_06410	0.28	-1.0
1,304,616	+		IAI47_06410	0.35	+1.4
1,304,616	+		IAI47_06410	0.35	-1.0
1,304,617	-		IAI47_06410	0.35	-0.3
1,304,617	-		IAI47_06410	0.35	-1.8