Strain Fitness in Pantoea sp. MT58 around IAI47_01735

Experiment: Ying_Nucleobase14 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_01725 and IAI47_01730 overlap by 1 nucleotidesIAI47_01730 and IAI47_01735 overlap by 8 nucleotidesIAI47_01735 and IAI47_01740 are separated by 8 nucleotidesIAI47_01740 and IAI47_01745 overlap by 1 nucleotides IAI47_01725: IAI47_01725 - biotin-independent malonate decarboxylase subunit gamma, at 377,530 to 378,330 _01725 IAI47_01730: IAI47_01730 - biotin-independent malonate decarboxylase subunit beta, at 378,330 to 379,163 _01730 IAI47_01735: IAI47_01735 - malonate decarboxylase acyl carrier protein, at 379,156 to 379,455 _01735 IAI47_01740: IAI47_01740 - triphosphoribosyl-dephospho-CoA synthase, at 379,464 to 380,324 _01740 IAI47_01745: IAI47_01745 - malonate decarboxylase subunit alpha, at 380,324 to 381,979 _01745 Position (kb) 379 380Strain fitness (log2 ratio) -2 -1 0 1 2at 378.170 kb on + strand, within IAI47_01725at 378.202 kb on - strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.222 kb on + strand, within IAI47_01725at 378.223 kb on - strand, within IAI47_01725at 378.331 kb on + strandat 378.331 kb on + strandat 378.331 kb on + strandat 378.331 kb on + strandat 378.332 kb on - strandat 378.332 kb on - strandat 378.332 kb on - strandat 378.360 kb on - strandat 378.360 kb on - strandat 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.424 kb on + strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.425 kb on - strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.428 kb on + strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.429 kb on - strand, within IAI47_01730at 378.465 kb on - strand, within IAI47_01730at 378.465 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.498 kb on - strand, within IAI47_01730at 378.566 kb on + strand, within IAI47_01730at 378.566 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.589 kb on + strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.590 kb on - strand, within IAI47_01730at 378.667 kb on + strand, within IAI47_01730at 378.667 kb on + strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.668 kb on - strand, within IAI47_01730at 378.689 kb on + strand, within IAI47_01730at 378.689 kb on + strand, within IAI47_01730at 378.690 kb on - strand, within IAI47_01730at 378.745 kb on + strand, within IAI47_01730at 378.745 kb on + strand, within IAI47_01730at 378.746 kb on - strand, within IAI47_01730at 378.777 kb on - strand, within IAI47_01730at 379.090 kb on + strandat 379.134 kb on + strandat 379.135 kb on - strandat 379.143 kb on - strandat 379.157 kb on + strandat 379.157 kb on + strandat 379.157 kb on + strandat 379.158 kb on - strandat 379.191 kb on + strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.192 kb on - strand, within IAI47_01735at 379.198 kb on - strand, within IAI47_01735at 379.233 kb on + strand, within IAI47_01735at 379.234 kb on - strand, within IAI47_01735at 379.234 kb on - strand, within IAI47_01735at 379.264 kb on + strand, within IAI47_01735at 379.264 kb on + strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.265 kb on - strand, within IAI47_01735at 379.326 kb on + strand, within IAI47_01735at 379.327 kb on - strand, within IAI47_01735at 379.361 kb on + strand, within IAI47_01735at 379.361 kb on + strand, within IAI47_01735at 379.362 kb on - strand, within IAI47_01735at 379.362 kb on - strand, within IAI47_01735at 379.374 kb on + strand, within IAI47_01735at 379.374 kb on + strand, within IAI47_01735at 379.375 kb on - strand, within IAI47_01735at 379.375 kb on - strand, within IAI47_01735at 379.425 kb on + strand, within IAI47_01735at 379.426 kb on - strandat 379.432 kb on + strandat 379.433 kb on - strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.438 kb on + strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.439 kb on - strandat 379.455 kb on + strandat 379.456 kb on - strandat 379.465 kb on + strandat 379.471 kb on + strandat 379.471 kb on + strandat 379.472 kb on - strandat 379.472 kb on - strandat 379.691 kb on + strand, within IAI47_01740at 379.691 kb on + strand, within IAI47_01740at 379.846 kb on + strand, within IAI47_01740at 379.847 kb on - strand, within IAI47_01740at 379.863 kb on + strand, within IAI47_01740at 379.863 kb on + strand, within IAI47_01740at 379.864 kb on - strand, within IAI47_01740at 380.214 kb on + strand, within IAI47_01740at 380.326 kb on - strandat 380.341 kb on + strandat 380.342 kb on - strandat 380.355 kb on + strandat 380.355 kb on + strandat 380.355 kb on + strandat 380.355 kb on + strandat 380.356 kb on - strandat 380.356 kb on - strandat 380.356 kb on - strandat 380.435 kb on - strandat 380.435 kb on - strandat 380.435 kb on - strandat 380.440 kb on + strandat 380.441 kb on - strandat 380.452 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1
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378,170 + IAI47_01725 0.80 +0.2
378,202 - IAI47_01725 0.84 +0.0
378,222 + IAI47_01725 0.86 +1.0
378,222 + IAI47_01725 0.86 -0.1
378,222 + IAI47_01725 0.86 +0.8
378,223 - IAI47_01725 0.87 +0.4
378,331 + -1.4
378,331 + +0.8
378,331 + +1.6
378,331 + -0.2
378,332 - -1.3
378,332 - -0.4
378,332 - -0.4
378,360 - +1.0
378,360 - -1.7
378,424 + IAI47_01730 0.11 +0.4
378,424 + IAI47_01730 0.11 +0.0
378,424 + IAI47_01730 0.11 -0.9
378,424 + IAI47_01730 0.11 -1.7
378,425 - IAI47_01730 0.11 +0.4
378,425 - IAI47_01730 0.11 -0.3
378,425 - IAI47_01730 0.11 +0.7
378,425 - IAI47_01730 0.11 -0.7
378,428 + IAI47_01730 0.12 +0.4
378,428 + IAI47_01730 0.12 +1.4
378,428 + IAI47_01730 0.12 +1.0
378,428 + IAI47_01730 0.12 -2.6
378,428 + IAI47_01730 0.12 -0.3
378,429 - IAI47_01730 0.12 +0.8
378,429 - IAI47_01730 0.12 -0.7
378,429 - IAI47_01730 0.12 -0.8
378,429 - IAI47_01730 0.12 +1.0
378,429 - IAI47_01730 0.12 +1.7
378,429 - IAI47_01730 0.12 +1.1
378,429 - IAI47_01730 0.12 +1.0
378,465 - IAI47_01730 0.16 -1.0
378,465 - IAI47_01730 0.16 -1.0
378,498 - IAI47_01730 0.20 -1.3
378,498 - IAI47_01730 0.20 +1.4
378,498 - IAI47_01730 0.20 -1.1
378,566 + IAI47_01730 0.28 -0.1
378,566 + IAI47_01730 0.28 +0.5
378,589 + IAI47_01730 0.31 -1.0
378,589 + IAI47_01730 0.31 +2.2
378,589 + IAI47_01730 0.31 +0.6
378,589 + IAI47_01730 0.31 +1.0
378,589 + IAI47_01730 0.31 -1.3
378,590 - IAI47_01730 0.31 +0.5
378,590 - IAI47_01730 0.31 +0.2
378,590 - IAI47_01730 0.31 +1.3
378,590 - IAI47_01730 0.31 -0.4
378,667 + IAI47_01730 0.40 -0.3
378,667 + IAI47_01730 0.40 -0.9
378,668 - IAI47_01730 0.41 -0.8
378,668 - IAI47_01730 0.41 +0.5
378,668 - IAI47_01730 0.41 -0.7
378,668 - IAI47_01730 0.41 +0.7
378,689 + IAI47_01730 0.43 -1.8
378,689 + IAI47_01730 0.43 -0.4
378,690 - IAI47_01730 0.43 -0.1
378,745 + IAI47_01730 0.50 -1.3
378,745 + IAI47_01730 0.50 -1.0
378,746 - IAI47_01730 0.50 +1.0
378,777 - IAI47_01730 0.54 +0.9
379,090 + -1.2
379,134 + -0.0
379,135 - +2.0
379,143 - +0.6
379,157 + -0.7
379,157 + +0.2
379,157 + -0.1
379,158 - -0.6
379,191 + IAI47_01735 0.12 +1.0
379,192 - IAI47_01735 0.12 +0.7
379,192 - IAI47_01735 0.12 -0.4
379,192 - IAI47_01735 0.12 +0.3
379,198 - IAI47_01735 0.14 -0.3
379,233 + IAI47_01735 0.26 +0.0
379,234 - IAI47_01735 0.26 +0.0
379,234 - IAI47_01735 0.26 -1.8
379,264 + IAI47_01735 0.36 +0.5
379,264 + IAI47_01735 0.36 +0.1
379,265 - IAI47_01735 0.36 +0.0
379,265 - IAI47_01735 0.36 +0.2
379,265 - IAI47_01735 0.36 +1.4
379,265 - IAI47_01735 0.36 +0.0
379,326 + IAI47_01735 0.57 -0.6
379,327 - IAI47_01735 0.57 +0.7
379,361 + IAI47_01735 0.68 -1.0
379,361 + IAI47_01735 0.68 +0.8
379,362 - IAI47_01735 0.69 +1.1
379,362 - IAI47_01735 0.69 +1.6
379,374 + IAI47_01735 0.73 +0.5
379,374 + IAI47_01735 0.73 +0.3
379,375 - IAI47_01735 0.73 +1.4
379,375 - IAI47_01735 0.73 -0.3
379,425 + IAI47_01735 0.90 -0.3
379,426 - +0.0
379,432 + -0.7
379,433 - +1.0
379,438 + -0.8
379,438 + -2.0
379,438 + +0.8
379,438 + -0.2
379,438 + +0.8
379,438 + +0.5
379,439 - +1.3
379,439 - +0.2
379,439 - -2.4
379,439 - -0.6
379,439 - -0.4
379,439 - -0.2
379,455 + +0.6
379,456 - -1.5
379,465 + -1.6
379,471 + +1.0
379,471 + +0.3
379,472 - +0.0
379,472 - -0.4
379,691 + IAI47_01740 0.26 -0.8
379,691 + IAI47_01740 0.26 +0.2
379,846 + IAI47_01740 0.44 +1.2
379,847 - IAI47_01740 0.44 -2.3
379,863 + IAI47_01740 0.46 -1.0
379,863 + IAI47_01740 0.46 -1.8
379,864 - IAI47_01740 0.46 -1.3
380,214 + IAI47_01740 0.87 -2.0
380,326 - +1.9
380,341 + +0.7
380,342 - -0.0
380,355 + +1.6
380,355 + +0.0
380,355 + +1.4
380,355 + +0.0
380,356 - +1.2
380,356 - +0.4
380,356 - +1.0
380,435 - +0.7
380,435 - -0.5
380,435 - +0.4
380,440 + +2.5
380,441 - +0.6
380,452 - -0.3

Or see this region's nucleotide sequence