Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_01720 and IAI47_01725 are separated by 135 nucleotides IAI47_01725 and IAI47_01730 overlap by 1 nucleotides IAI47_01730 and IAI47_01735 overlap by 8 nucleotides IAI47_01735 and IAI47_01740 are separated by 8 nucleotides
IAI47_01720: IAI47_01720 - AEC family transporter, at 376,435 to 377,394
_01720
IAI47_01725: IAI47_01725 - biotin-independent malonate decarboxylase subunit gamma, at 377,530 to 378,330
_01725
IAI47_01730: IAI47_01730 - biotin-independent malonate decarboxylase subunit beta, at 378,330 to 379,163
_01730
IAI47_01735: IAI47_01735 - malonate decarboxylase acyl carrier protein, at 379,156 to 379,455
_01735
IAI47_01740: IAI47_01740 - triphosphoribosyl-dephospho-CoA synthase, at 379,464 to 380,324
_01740
Position (kb) 378
379
380 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 377.341 kb on + strand at 377.341 kb on + strand at 377.342 kb on - strand at 377.342 kb on - strand at 377.349 kb on + strand at 377.349 kb on + strand at 377.349 kb on + strand at 377.349 kb on + strand at 377.349 kb on + strand at 377.349 kb on + strand at 377.349 kb on + strand at 377.350 kb on - strand at 377.350 kb on - strand at 377.350 kb on - strand at 377.350 kb on - strand at 377.350 kb on - strand at 377.351 kb on - strand at 377.355 kb on + strand at 377.356 kb on - strand at 377.383 kb on + strand at 377.383 kb on + strand at 377.383 kb on + strand at 377.383 kb on + strand at 377.383 kb on + strand at 377.384 kb on - strand at 377.384 kb on - strand at 377.384 kb on - strand at 377.384 kb on - strand at 377.384 kb on - strand at 377.387 kb on + strand at 377.387 kb on + strand at 377.388 kb on - strand at 377.388 kb on - strand at 377.388 kb on - strand at 377.394 kb on + strand at 377.395 kb on - strand at 377.395 kb on - strand at 377.405 kb on + strand at 377.405 kb on + strand at 377.405 kb on + strand at 377.410 kb on - strand at 377.441 kb on + strand at 377.442 kb on - strand at 377.442 kb on - strand at 377.444 kb on - strand at 377.482 kb on + strand at 377.483 kb on - strand at 377.483 kb on - strand at 377.523 kb on + strand at 377.523 kb on + strand at 377.523 kb on + strand at 377.531 kb on + strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.532 kb on - strand at 377.547 kb on + strand at 377.547 kb on + strand at 377.547 kb on + strand at 377.547 kb on + strand at 377.547 kb on + strand at 377.547 kb on + strand at 377.547 kb on + strand at 377.548 kb on - strand at 377.548 kb on - strand at 377.548 kb on - strand at 377.548 kb on - strand at 377.548 kb on - strand at 377.548 kb on - strand at 377.580 kb on + strand at 377.580 kb on + strand at 377.580 kb on + strand at 377.580 kb on + strand at 377.581 kb on - strand at 377.607 kb on + strand at 377.607 kb on + strand at 377.641 kb on + strand, within IAI47_01725 at 377.641 kb on + strand, within IAI47_01725 at 377.641 kb on + strand, within IAI47_01725 at 377.642 kb on - strand, within IAI47_01725 at 377.642 kb on - strand, within IAI47_01725 at 377.642 kb on - strand, within IAI47_01725 at 377.642 kb on - strand, within IAI47_01725 at 377.642 kb on - strand, within IAI47_01725 at 377.642 kb on - strand, within IAI47_01725 at 377.642 kb on - strand, within IAI47_01725 at 377.736 kb on + strand, within IAI47_01725 at 377.736 kb on + strand, within IAI47_01725 at 377.737 kb on - strand, within IAI47_01725 at 377.737 kb on - strand, within IAI47_01725 at 377.737 kb on - strand, within IAI47_01725 at 377.737 kb on - strand, within IAI47_01725 at 377.747 kb on + strand, within IAI47_01725 at 377.747 kb on + strand, within IAI47_01725 at 377.747 kb on + strand, within IAI47_01725 at 377.747 kb on + strand, within IAI47_01725 at 377.747 kb on + strand, within IAI47_01725 at 377.748 kb on - strand, within IAI47_01725 at 377.748 kb on - strand, within IAI47_01725 at 377.748 kb on - strand, within IAI47_01725 at 377.748 kb on - strand, within IAI47_01725 at 377.748 kb on - strand, within IAI47_01725 at 377.755 kb on - strand, within IAI47_01725 at 377.919 kb on + strand, within IAI47_01725 at 377.919 kb on + strand, within IAI47_01725 at 377.920 kb on - strand, within IAI47_01725 at 377.920 kb on - strand, within IAI47_01725 at 378.029 kb on + strand, within IAI47_01725 at 378.029 kb on + strand, within IAI47_01725 at 378.030 kb on - strand, within IAI47_01725 at 378.030 kb on - strand, within IAI47_01725 at 378.030 kb on - strand, within IAI47_01725 at 378.030 kb on - strand, within IAI47_01725 at 378.170 kb on + strand, within IAI47_01725 at 378.202 kb on - strand, within IAI47_01725 at 378.222 kb on + strand, within IAI47_01725 at 378.222 kb on + strand, within IAI47_01725 at 378.222 kb on + strand, within IAI47_01725 at 378.223 kb on - strand, within IAI47_01725 at 378.331 kb on + strand at 378.331 kb on + strand at 378.331 kb on + strand at 378.331 kb on + strand at 378.332 kb on - strand at 378.332 kb on - strand at 378.332 kb on - strand at 378.360 kb on - strand at 378.360 kb on - strand at 378.424 kb on + strand, within IAI47_01730 at 378.424 kb on + strand, within IAI47_01730 at 378.424 kb on + strand, within IAI47_01730 at 378.424 kb on + strand, within IAI47_01730 at 378.425 kb on - strand, within IAI47_01730 at 378.425 kb on - strand, within IAI47_01730 at 378.425 kb on - strand, within IAI47_01730 at 378.425 kb on - strand, within IAI47_01730 at 378.428 kb on + strand, within IAI47_01730 at 378.428 kb on + strand, within IAI47_01730 at 378.428 kb on + strand, within IAI47_01730 at 378.428 kb on + strand, within IAI47_01730 at 378.428 kb on + strand, within IAI47_01730 at 378.429 kb on - strand, within IAI47_01730 at 378.429 kb on - strand, within IAI47_01730 at 378.429 kb on - strand, within IAI47_01730 at 378.429 kb on - strand, within IAI47_01730 at 378.429 kb on - strand, within IAI47_01730 at 378.429 kb on - strand, within IAI47_01730 at 378.429 kb on - strand, within IAI47_01730 at 378.465 kb on - strand, within IAI47_01730 at 378.465 kb on - strand, within IAI47_01730 at 378.498 kb on - strand, within IAI47_01730 at 378.498 kb on - strand, within IAI47_01730 at 378.498 kb on - strand, within IAI47_01730 at 378.566 kb on + strand, within IAI47_01730 at 378.566 kb on + strand, within IAI47_01730 at 378.589 kb on + strand, within IAI47_01730 at 378.589 kb on + strand, within IAI47_01730 at 378.589 kb on + strand, within IAI47_01730 at 378.589 kb on + strand, within IAI47_01730 at 378.589 kb on + strand, within IAI47_01730 at 378.590 kb on - strand, within IAI47_01730 at 378.590 kb on - strand, within IAI47_01730 at 378.590 kb on - strand, within IAI47_01730 at 378.590 kb on - strand, within IAI47_01730 at 378.667 kb on + strand, within IAI47_01730 at 378.667 kb on + strand, within IAI47_01730 at 378.668 kb on - strand, within IAI47_01730 at 378.668 kb on - strand, within IAI47_01730 at 378.668 kb on - strand, within IAI47_01730 at 378.668 kb on - strand, within IAI47_01730 at 378.689 kb on + strand, within IAI47_01730 at 378.689 kb on + strand, within IAI47_01730 at 378.690 kb on - strand, within IAI47_01730 at 378.745 kb on + strand, within IAI47_01730 at 378.745 kb on + strand, within IAI47_01730 at 378.746 kb on - strand, within IAI47_01730 at 378.777 kb on - strand, within IAI47_01730 at 379.090 kb on + strand at 379.134 kb on + strand at 379.135 kb on - strand at 379.143 kb on - strand at 379.157 kb on + strand at 379.157 kb on + strand at 379.157 kb on + strand at 379.158 kb on - strand at 379.191 kb on + strand, within IAI47_01735 at 379.192 kb on - strand, within IAI47_01735 at 379.192 kb on - strand, within IAI47_01735 at 379.192 kb on - strand, within IAI47_01735 at 379.198 kb on - strand, within IAI47_01735 at 379.233 kb on + strand, within IAI47_01735 at 379.234 kb on - strand, within IAI47_01735 at 379.234 kb on - strand, within IAI47_01735 at 379.264 kb on + strand, within IAI47_01735 at 379.264 kb on + strand, within IAI47_01735 at 379.265 kb on - strand, within IAI47_01735 at 379.265 kb on - strand, within IAI47_01735 at 379.265 kb on - strand, within IAI47_01735 at 379.265 kb on - strand, within IAI47_01735 at 379.326 kb on + strand, within IAI47_01735 at 379.327 kb on - strand, within IAI47_01735 at 379.361 kb on + strand, within IAI47_01735 at 379.361 kb on + strand, within IAI47_01735 at 379.362 kb on - strand, within IAI47_01735 at 379.362 kb on - strand, within IAI47_01735 at 379.374 kb on + strand, within IAI47_01735 at 379.374 kb on + strand, within IAI47_01735 at 379.375 kb on - strand, within IAI47_01735 at 379.375 kb on - strand, within IAI47_01735 at 379.425 kb on + strand, within IAI47_01735 at 379.426 kb on - strand at 379.432 kb on + strand at 379.433 kb on - strand at 379.438 kb on + strand at 379.438 kb on + strand at 379.438 kb on + strand at 379.438 kb on + strand at 379.438 kb on + strand at 379.438 kb on + strand at 379.439 kb on - strand at 379.439 kb on - strand at 379.439 kb on - strand at 379.439 kb on - strand at 379.439 kb on - strand at 379.439 kb on - strand at 379.455 kb on + strand at 379.456 kb on - strand at 379.465 kb on + strand at 379.471 kb on + strand at 379.471 kb on + strand at 379.472 kb on - strand at 379.472 kb on - strand at 379.691 kb on + strand, within IAI47_01740 at 379.691 kb on + strand, within IAI47_01740 at 379.846 kb on + strand, within IAI47_01740 at 379.847 kb on - strand, within IAI47_01740 at 379.863 kb on + strand, within IAI47_01740 at 379.863 kb on + strand, within IAI47_01740 at 379.864 kb on - strand, within IAI47_01740
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 377,341 + +0.6 377,341 + +0.5 377,342 - +0.2 377,342 - -0.3 377,349 + +0.6 377,349 + -0.5 377,349 + +0.7 377,349 + +0.0 377,349 + -1.3 377,349 + +1.0 377,349 + -0.5 377,350 - -1.8 377,350 - -0.3 377,350 - -0.7 377,350 - +1.0 377,350 - -0.4 377,351 - +0.5 377,355 + +0.2 377,356 - +1.3 377,383 + +0.0 377,383 + +0.5 377,383 + +0.8 377,383 + +0.2 377,383 + -0.8 377,384 - -0.8 377,384 - -2.4 377,384 - +0.7 377,384 - -1.6 377,384 - +0.0 377,387 + -1.1 377,387 + -0.1 377,388 - -0.7 377,388 - +0.1 377,388 - +0.3 377,394 + -0.3 377,395 - -0.7 377,395 - +1.3 377,405 + -0.2 377,405 + +2.0 377,405 + -1.3 377,410 - +0.0 377,441 + +0.3 377,442 - -1.6 377,442 - -1.3 377,444 - -0.6 377,482 + +1.3 377,483 - -1.6 377,483 - -2.7 377,523 + -0.1 377,523 + +1.0 377,523 + +0.4 377,531 + +0.7 377,532 - +1.0 377,532 - -0.6 377,532 - +1.3 377,547 + +1.4 377,547 + -2.6 377,547 + -0.1 377,547 + -0.7 377,547 + +0.3 377,547 + +1.4 377,547 + +0.3 377,548 - -0.2 377,548 - +1.0 377,548 - -0.7 377,548 - -3.3 377,548 - +0.0 377,548 - +0.3 377,580 + -0.1 377,580 + +1.3 377,580 + -0.4 377,580 + +0.4 377,581 - +0.0 377,607 + -0.7 377,607 + +0.6 377,641 + IAI47_01725 0.14 +1.0 377,641 + IAI47_01725 0.14 +0.5 377,641 + IAI47_01725 0.14 +1.4 377,642 - IAI47_01725 0.14 +0.3 377,642 - IAI47_01725 0.14 -0.9 377,642 - IAI47_01725 0.14 -0.5 377,642 - IAI47_01725 0.14 +2.0 377,642 - IAI47_01725 0.14 +1.2 377,642 - IAI47_01725 0.14 -0.4 377,642 - IAI47_01725 0.14 -0.1 377,736 + IAI47_01725 0.26 -1.3 377,736 + IAI47_01725 0.26 +1.1 377,737 - IAI47_01725 0.26 +1.0 377,737 - IAI47_01725 0.26 +0.9 377,737 - IAI47_01725 0.26 +0.0 377,737 - IAI47_01725 0.26 -0.7 377,747 + IAI47_01725 0.27 -0.6 377,747 + IAI47_01725 0.27 -1.0 377,747 + IAI47_01725 0.27 -3.4 377,747 + IAI47_01725 0.27 +0.0 377,747 + IAI47_01725 0.27 +0.2 377,748 - IAI47_01725 0.27 -1.2 377,748 - IAI47_01725 0.27 -2.4 377,748 - IAI47_01725 0.27 +1.3 377,748 - IAI47_01725 0.27 +0.5 377,748 - IAI47_01725 0.27 +1.6 377,755 - IAI47_01725 0.28 +1.6 377,919 + IAI47_01725 0.49 -1.7 377,919 + IAI47_01725 0.49 +1.6 377,920 - IAI47_01725 0.49 +0.2 377,920 - IAI47_01725 0.49 +1.0 378,029 + IAI47_01725 0.62 -0.1 378,029 + IAI47_01725 0.62 -1.3 378,030 - IAI47_01725 0.62 -1.8 378,030 - IAI47_01725 0.62 +0.7 378,030 - IAI47_01725 0.62 -1.6 378,030 - IAI47_01725 0.62 +2.0 378,170 + IAI47_01725 0.80 +0.2 378,202 - IAI47_01725 0.84 +0.0 378,222 + IAI47_01725 0.86 +1.0 378,222 + IAI47_01725 0.86 -0.1 378,222 + IAI47_01725 0.86 +0.8 378,223 - IAI47_01725 0.87 +0.4 378,331 + -1.4 378,331 + +0.8 378,331 + +1.6 378,331 + -0.2 378,332 - -1.3 378,332 - -0.4 378,332 - -0.4 378,360 - +1.0 378,360 - -1.7 378,424 + IAI47_01730 0.11 +0.4 378,424 + IAI47_01730 0.11 +0.0 378,424 + IAI47_01730 0.11 -0.9 378,424 + IAI47_01730 0.11 -1.7 378,425 - IAI47_01730 0.11 +0.4 378,425 - IAI47_01730 0.11 -0.3 378,425 - IAI47_01730 0.11 +0.7 378,425 - IAI47_01730 0.11 -0.7 378,428 + IAI47_01730 0.12 +0.4 378,428 + IAI47_01730 0.12 +1.4 378,428 + IAI47_01730 0.12 +1.0 378,428 + IAI47_01730 0.12 -2.6 378,428 + IAI47_01730 0.12 -0.3 378,429 - IAI47_01730 0.12 +0.8 378,429 - IAI47_01730 0.12 -0.7 378,429 - IAI47_01730 0.12 -0.8 378,429 - IAI47_01730 0.12 +1.0 378,429 - IAI47_01730 0.12 +1.7 378,429 - IAI47_01730 0.12 +1.1 378,429 - IAI47_01730 0.12 +1.0 378,465 - IAI47_01730 0.16 -1.0 378,465 - IAI47_01730 0.16 -1.0 378,498 - IAI47_01730 0.20 -1.3 378,498 - IAI47_01730 0.20 +1.4 378,498 - IAI47_01730 0.20 -1.1 378,566 + IAI47_01730 0.28 -0.1 378,566 + IAI47_01730 0.28 +0.5 378,589 + IAI47_01730 0.31 -1.0 378,589 + IAI47_01730 0.31 +2.2 378,589 + IAI47_01730 0.31 +0.6 378,589 + IAI47_01730 0.31 +1.0 378,589 + IAI47_01730 0.31 -1.3 378,590 - IAI47_01730 0.31 +0.5 378,590 - IAI47_01730 0.31 +0.2 378,590 - IAI47_01730 0.31 +1.3 378,590 - IAI47_01730 0.31 -0.4 378,667 + IAI47_01730 0.40 -0.3 378,667 + IAI47_01730 0.40 -0.9 378,668 - IAI47_01730 0.41 -0.8 378,668 - IAI47_01730 0.41 +0.5 378,668 - IAI47_01730 0.41 -0.7 378,668 - IAI47_01730 0.41 +0.7 378,689 + IAI47_01730 0.43 -1.8 378,689 + IAI47_01730 0.43 -0.4 378,690 - IAI47_01730 0.43 -0.1 378,745 + IAI47_01730 0.50 -1.3 378,745 + IAI47_01730 0.50 -1.0 378,746 - IAI47_01730 0.50 +1.0 378,777 - IAI47_01730 0.54 +0.9 379,090 + -1.2 379,134 + -0.0 379,135 - +2.0 379,143 - +0.6 379,157 + -0.7 379,157 + +0.2 379,157 + -0.1 379,158 - -0.6 379,191 + IAI47_01735 0.12 +1.0 379,192 - IAI47_01735 0.12 +0.7 379,192 - IAI47_01735 0.12 -0.4 379,192 - IAI47_01735 0.12 +0.3 379,198 - IAI47_01735 0.14 -0.3 379,233 + IAI47_01735 0.26 +0.0 379,234 - IAI47_01735 0.26 +0.0 379,234 - IAI47_01735 0.26 -1.8 379,264 + IAI47_01735 0.36 +0.5 379,264 + IAI47_01735 0.36 +0.1 379,265 - IAI47_01735 0.36 +0.0 379,265 - IAI47_01735 0.36 +0.2 379,265 - IAI47_01735 0.36 +1.4 379,265 - IAI47_01735 0.36 +0.0 379,326 + IAI47_01735 0.57 -0.6 379,327 - IAI47_01735 0.57 +0.7 379,361 + IAI47_01735 0.68 -1.0 379,361 + IAI47_01735 0.68 +0.8 379,362 - IAI47_01735 0.69 +1.1 379,362 - IAI47_01735 0.69 +1.6 379,374 + IAI47_01735 0.73 +0.5 379,374 + IAI47_01735 0.73 +0.3 379,375 - IAI47_01735 0.73 +1.4 379,375 - IAI47_01735 0.73 -0.3 379,425 + IAI47_01735 0.90 -0.3 379,426 - +0.0 379,432 + -0.7 379,433 - +1.0 379,438 + -0.8 379,438 + -2.0 379,438 + +0.8 379,438 + -0.2 379,438 + +0.8 379,438 + +0.5 379,439 - +1.3 379,439 - +0.2 379,439 - -2.4 379,439 - -0.6 379,439 - -0.4 379,439 - -0.2 379,455 + +0.6 379,456 - -1.5 379,465 + -1.6 379,471 + +1.0 379,471 + +0.3 379,472 - +0.0 379,472 - -0.4 379,691 + IAI47_01740 0.26 -0.8 379,691 + IAI47_01740 0.26 +0.2 379,846 + IAI47_01740 0.44 +1.2 379,847 - IAI47_01740 0.44 -2.3 379,863 + IAI47_01740 0.46 -1.0 379,863 + IAI47_01740 0.46 -1.8 379,864 - IAI47_01740 0.46 -1.3
Or see this region's nucleotide sequence