Strain Fitness in Pantoea sp. MT58 around IAI47_00870

Experiment: Ying_Nucleobase14 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep A; time point 1
183,715	-				-2.3
183,723	-				-0.4
183,723	-				+0.1
183,723	-				-1.3
183,723	-				+1.0
183,723	-				+0.4
183,757	+				-1.0
183,757	+				+1.2
183,757	+				+2.3
183,757	+				+0.3
183,757	+				-0.1
183,757	+				-1.3
183,758	-				-1.8
183,758	-				+0.1
183,758	-				-0.6
183,758	-				+1.0
183,762	+				+0.2
183,762	+				+1.4
183,762	+				+0.5
183,762	+				-1.5
183,762	+				+0.6
183,763	-				+1.6
183,763	-				-1.0
183,763	-				+0.1
183,763	-				-0.2
183,786	-				+1.0
183,862	+				+2.0
183,869	+				-1.0
183,869	+				+0.0
183,869	+				+0.0
183,869	+				+1.8
183,869	+				-0.6
183,869	+				-1.6
183,869	+				+1.6
183,869	+				-0.8
183,869	+				-1.0
183,869	+				-0.4
183,869	+				-0.0
183,869	+				+2.0
183,869	+				+0.2
183,869	+				+1.0
183,869	+				-0.4
183,869	+				+0.6
183,869	+				-1.0
183,871	+				+0.0
183,871	+				+0.7
183,871	+				+0.8
184,127	+		IAI47_00870	0.83	-2.3
184,128	-		IAI47_00870	0.83	-1.3
184,161	+				+1.0
184,161	+				+1.7
184,167	+				+0.0
184,167	+				+0.7
184,167	+				-0.3
184,167	+				-1.0
184,168	-				-2.7
184,168	-				-1.3
184,269	-				-0.8
184,276	+		IAI47_00875	0.10	-1.6
184,328	-		IAI47_00875	0.26	-0.7
184,478	-		IAI47_00875	0.74	+1.0
184,478	-		IAI47_00875	0.74	-0.4
184,538	-				-1.0
184,539	+				+0.0
184,540	-				-2.5
184,567	-				-1.0
184,571	+				+1.0
184,571	+				+1.4
184,575	+				-3.2
184,575	+				-3.2
184,586	-				+2.6
184,586	-				+0.4
184,608	+				+0.0
184,609	-				+0.3
184,609	-				-1.0
184,640	-				-0.2
184,640	-				-1.6
184,703	-				+0.4
184,703	-				-0.8
184,715	+				-2.5
184,715	+				-2.3
184,715	+				+0.3
184,737	+				-1.3
184,751	+				-0.5
184,751	+				+0.0
184,751	+				-0.4
184,752	-				-0.6
184,765	+				-1.3
184,766	-				-2.3
184,766	-				-0.4
184,766	-				+1.3
184,766	-				+0.0
184,776	-				-0.8
184,776	-				-1.6
184,802	-				-3.3
184,802	-				-1.1
184,802	-				-1.3
184,802	-				-2.3
184,844	-				-1.6
184,892	+				-2.1
184,892	+				-1.3
184,892	+				-1.6
184,893	-				-4.3
184,893	-				+1.0
184,893	-				-3.8
184,893	-				-0.3
184,924	+				-1.6
184,924	+				-0.8
184,924	+				-2.2
184,924	+				-5.1
184,924	+				-3.1
184,925	-				-0.9
184,925	-				-1.6
184,925	-				-2.4
184,925	-				-2.0
184,925	-				-2.6
184,925	-				-2.0
184,931	+				-1.6
184,931	+				-0.6
184,932	-				-2.2
184,949	-				-1.8
184,970	+		IAI47_00880	0.12	-1.6
184,971	-		IAI47_00880	0.12	-1.3
184,971	-		IAI47_00880	0.12	-3.0
184,971	-		IAI47_00880	0.12	-1.0
184,971	-		IAI47_00880	0.12	-0.6
184,971	-		IAI47_00880	0.12	-1.0
184,971	-		IAI47_00880	0.12	-0.6
185,004	+		IAI47_00880	0.15	-2.8
185,004	+		IAI47_00880	0.15	-3.3
185,005	-		IAI47_00880	0.15	-1.6
185,005	-		IAI47_00880	0.15	-1.6
185,005	-		IAI47_00880	0.15	-1.3
185,012	-		IAI47_00880	0.15	-2.2
185,012	-		IAI47_00880	0.15	-2.8
185,012	-		IAI47_00880	0.15	-3.8
185,012	-		IAI47_00880	0.15	-0.6
185,046	+		IAI47_00880	0.18	-1.8
185,046	+		IAI47_00880	0.18	-3.7
185,046	+		IAI47_00880	0.18	-0.6
185,049	+		IAI47_00880	0.18	-1.6
185,049	+		IAI47_00880	0.18	-3.2
185,049	+		IAI47_00880	0.18	-1.3
185,135	+		IAI47_00880	0.26	-2.7
185,147	+		IAI47_00880	0.27	+0.4
185,148	-		IAI47_00880	0.27	-1.2
185,148	-		IAI47_00880	0.27	-3.6