Experiment: Ying_Nucleobase14 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00845 and IAI47_00850 are separated by 10 nucleotides IAI47_00850 and IAI47_00855 are separated by 88 nucleotides
IAI47_00845: IAI47_00845 - HslU--HslV peptidase ATPase subunit, at 177,219 to 178,556
_00845
IAI47_00850: IAI47_00850 - ATP-dependent protease subunit HslV, at 178,567 to 179,097
_00850
IAI47_00855: IAI47_00855 - cell division protein FtsN, at 179,186 to 180,172
_00855
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 177.647 kb on + strand, within IAI47_00845 at 177.647 kb on + strand, within IAI47_00845 at 177.647 kb on + strand, within IAI47_00845 at 177.647 kb on + strand, within IAI47_00845 at 177.648 kb on - strand, within IAI47_00845 at 177.648 kb on - strand, within IAI47_00845 at 177.648 kb on - strand, within IAI47_00845 at 177.803 kb on + strand, within IAI47_00845 at 177.840 kb on - strand, within IAI47_00845 at 178.046 kb on + strand, within IAI47_00845 at 178.047 kb on - strand, within IAI47_00845 at 178.047 kb on - strand, within IAI47_00845 at 178.047 kb on - strand, within IAI47_00845 at 178.195 kb on + strand, within IAI47_00845 at 178.195 kb on + strand, within IAI47_00845 at 178.195 kb on + strand, within IAI47_00845 at 178.196 kb on - strand, within IAI47_00845 at 178.196 kb on - strand, within IAI47_00845 at 178.262 kb on + strand, within IAI47_00845 at 178.262 kb on + strand, within IAI47_00845 at 178.262 kb on + strand, within IAI47_00845 at 178.262 kb on + strand, within IAI47_00845 at 178.263 kb on - strand, within IAI47_00845 at 178.263 kb on - strand, within IAI47_00845 at 178.263 kb on - strand, within IAI47_00845 at 178.285 kb on + strand, within IAI47_00845 at 178.286 kb on - strand, within IAI47_00845 at 178.299 kb on - strand, within IAI47_00845 at 178.473 kb on - strand at 178.508 kb on + strand at 178.509 kb on - strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.562 kb on + strand at 178.563 kb on - strand at 178.563 kb on - strand at 178.575 kb on + strand at 178.575 kb on + strand at 178.576 kb on - strand at 178.582 kb on + strand at 178.583 kb on - strand at 178.596 kb on + strand at 178.596 kb on + strand at 178.609 kb on - strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.614 kb on - strand at 178.614 kb on - strand at 178.624 kb on - strand, within IAI47_00850 at 178.624 kb on - strand, within IAI47_00850 at 178.624 kb on - strand, within IAI47_00850 at 178.678 kb on - strand, within IAI47_00850 at 178.813 kb on + strand, within IAI47_00850 at 178.814 kb on - strand, within IAI47_00850 at 178.814 kb on - strand, within IAI47_00850 at 178.814 kb on - strand, within IAI47_00850 at 178.836 kb on + strand, within IAI47_00850 at 178.836 kb on + strand, within IAI47_00850 at 178.836 kb on + strand, within IAI47_00850 at 178.837 kb on - strand, within IAI47_00850 at 178.837 kb on - strand, within IAI47_00850 at 178.837 kb on - strand, within IAI47_00850 at 178.837 kb on - strand, within IAI47_00850 at 178.908 kb on + strand, within IAI47_00850 at 178.909 kb on - strand, within IAI47_00850 at 178.974 kb on + strand, within IAI47_00850 at 178.975 kb on - strand, within IAI47_00850 at 178.975 kb on - strand, within IAI47_00850 at 178.975 kb on - strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.983 kb on - strand, within IAI47_00850 at 178.983 kb on - strand, within IAI47_00850 at 178.983 kb on - strand, within IAI47_00850 at 178.983 kb on - strand, within IAI47_00850 at 178.984 kb on + strand, within IAI47_00850 at 178.984 kb on + strand, within IAI47_00850 at 178.985 kb on - strand, within IAI47_00850 at 179.022 kb on + strand, within IAI47_00850 at 179.023 kb on - strand, within IAI47_00850 at 179.034 kb on + strand, within IAI47_00850 at 179.035 kb on - strand, within IAI47_00850 at 179.035 kb on - strand, within IAI47_00850 at 179.059 kb on + strand at 179.060 kb on - strand at 179.060 kb on - strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.078 kb on - strand at 179.078 kb on - strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.086 kb on + strand at 179.086 kb on + strand at 179.086 kb on + strand at 179.086 kb on + strand at 179.086 kb on + strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.150 kb on + strand at 179.151 kb on - strand at 179.151 kb on - strand at 179.151 kb on - strand at 179.163 kb on - strand at 179.164 kb on + strand at 179.164 kb on + strand at 179.164 kb on + strand at 179.164 kb on + strand at 179.165 kb on - strand at 179.207 kb on + strand at 179.207 kb on + strand at 179.207 kb on + strand at 179.208 kb on - strand at 179.208 kb on - strand at 179.209 kb on + strand at 179.209 kb on + strand at 179.209 kb on + strand at 179.209 kb on + strand at 179.210 kb on - strand at 179.210 kb on - strand at 179.210 kb on - strand at 179.210 kb on - strand at 179.272 kb on + strand at 179.273 kb on - strand at 179.273 kb on - strand at 179.274 kb on + strand at 179.275 kb on - strand at 179.314 kb on + strand, within IAI47_00855 at 179.314 kb on + strand, within IAI47_00855 at 179.314 kb on + strand, within IAI47_00855 at 179.315 kb on - strand, within IAI47_00855 at 179.315 kb on - strand, within IAI47_00855 at 179.343 kb on - strand, within IAI47_00855 at 179.355 kb on - strand, within IAI47_00855 at 179.355 kb on - strand, within IAI47_00855 at 179.355 kb on - strand, within IAI47_00855 at 179.355 kb on - strand, within IAI47_00855 at 179.510 kb on + strand, within IAI47_00855 at 179.510 kb on + strand, within IAI47_00855 at 179.510 kb on + strand, within IAI47_00855 at 179.511 kb on - strand, within IAI47_00855 at 179.511 kb on - strand, within IAI47_00855 at 179.785 kb on + strand, within IAI47_00855 at 179.785 kb on + strand, within IAI47_00855 at 179.786 kb on - strand, within IAI47_00855 at 179.786 kb on - strand, within IAI47_00855 at 179.786 kb on - strand, within IAI47_00855 at 179.888 kb on - strand, within IAI47_00855
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep A; time point 1 remove 177,647 + IAI47_00845 0.32 -1.9 177,647 + IAI47_00845 0.32 +1.0 177,647 + IAI47_00845 0.32 +1.3 177,647 + IAI47_00845 0.32 +0.3 177,648 - IAI47_00845 0.32 -1.8 177,648 - IAI47_00845 0.32 +0.7 177,648 - IAI47_00845 0.32 +1.2 177,803 + IAI47_00845 0.44 -1.1 177,840 - IAI47_00845 0.46 +0.5 178,046 + IAI47_00845 0.62 -0.3 178,047 - IAI47_00845 0.62 -0.3 178,047 - IAI47_00845 0.62 +1.0 178,047 - IAI47_00845 0.62 +3.3 178,195 + IAI47_00845 0.73 +2.0 178,195 + IAI47_00845 0.73 -0.7 178,195 + IAI47_00845 0.73 +0.1 178,196 - IAI47_00845 0.73 +0.0 178,196 - IAI47_00845 0.73 -0.7 178,262 + IAI47_00845 0.78 -0.6 178,262 + IAI47_00845 0.78 +0.2 178,262 + IAI47_00845 0.78 +0.0 178,262 + IAI47_00845 0.78 +1.2 178,263 - IAI47_00845 0.78 +0.1 178,263 - IAI47_00845 0.78 -0.1 178,263 - IAI47_00845 0.78 -0.6 178,285 + IAI47_00845 0.80 -0.3 178,286 - IAI47_00845 0.80 +0.8 178,299 - IAI47_00845 0.81 -0.5 178,473 - -1.6 178,508 + +0.6 178,509 - -1.8 178,556 + -0.6 178,556 + +0.0 178,556 + -0.6 178,556 + -0.6 178,556 + +0.3 178,556 + +1.0 178,556 + +0.0 178,556 + -0.3 178,557 - +0.9 178,557 - -0.1 178,557 - +1.0 178,557 - -0.7 178,557 - -0.1 178,557 - -0.0 178,557 - -0.1 178,560 + +0.1 178,560 + +0.1 178,560 + +0.6 178,560 + +0.1 178,560 + +0.2 178,560 + +1.2 178,560 + -0.6 178,560 + -0.6 178,560 + -0.3 178,561 - +0.3 178,561 - +1.0 178,561 - -0.1 178,561 - +0.4 178,561 - -0.3 178,561 - -0.5 178,561 - +0.9 178,561 - -0.8 178,561 - +0.4 178,561 - -0.8 178,561 - -3.1 178,562 + -2.5 178,563 - +0.4 178,563 - +1.6 178,575 + +0.7 178,575 + -1.6 178,576 - -0.9 178,582 + +0.8 178,583 - +0.7 178,596 + +0.6 178,596 + +0.2 178,609 - -0.8 178,613 + -0.7 178,613 + +2.6 178,613 + -0.6 178,613 + +1.5 178,613 + -1.0 178,614 - +1.0 178,614 - +0.0 178,624 - IAI47_00850 0.11 +1.4 178,624 - IAI47_00850 0.11 +2.6 178,624 - IAI47_00850 0.11 +0.1 178,678 - IAI47_00850 0.21 +0.6 178,813 + IAI47_00850 0.46 -2.0 178,814 - IAI47_00850 0.47 +2.6 178,814 - IAI47_00850 0.47 +0.3 178,814 - IAI47_00850 0.47 +2.0 178,836 + IAI47_00850 0.51 -0.9 178,836 + IAI47_00850 0.51 -1.8 178,836 + IAI47_00850 0.51 +1.0 178,837 - IAI47_00850 0.51 +0.0 178,837 - IAI47_00850 0.51 -0.8 178,837 - IAI47_00850 0.51 -0.7 178,837 - IAI47_00850 0.51 +1.0 178,908 + IAI47_00850 0.64 -1.3 178,909 - IAI47_00850 0.64 -0.5 178,974 + IAI47_00850 0.77 +1.5 178,975 - IAI47_00850 0.77 +0.0 178,975 - IAI47_00850 0.77 -0.8 178,975 - IAI47_00850 0.77 -0.5 178,982 + IAI47_00850 0.78 -1.1 178,982 + IAI47_00850 0.78 -0.3 178,982 + IAI47_00850 0.78 +0.0 178,982 + IAI47_00850 0.78 -0.7 178,982 + IAI47_00850 0.78 -2.5 178,983 - IAI47_00850 0.78 +1.3 178,983 - IAI47_00850 0.78 +1.3 178,983 - IAI47_00850 0.78 -0.1 178,983 - IAI47_00850 0.78 +0.1 178,984 + IAI47_00850 0.79 +0.1 178,984 + IAI47_00850 0.79 -0.2 178,985 - IAI47_00850 0.79 +1.3 179,022 + IAI47_00850 0.86 -2.5 179,023 - IAI47_00850 0.86 +0.9 179,034 + IAI47_00850 0.88 -1.6 179,035 - IAI47_00850 0.88 -0.6 179,035 - IAI47_00850 0.88 +0.3 179,059 + +2.6 179,060 - +1.1 179,060 - -0.3 179,077 + +0.6 179,077 + +1.0 179,077 + +0.8 179,077 + +0.6 179,077 + -0.2 179,078 - +2.0 179,078 - -0.7 179,083 + -0.7 179,083 + +0.2 179,083 + +1.7 179,083 + +0.5 179,083 + +2.3 179,083 + -1.3 179,083 + -0.8 179,083 + +2.8 179,084 - +0.0 179,084 - -1.2 179,084 - -0.6 179,084 - +3.8 179,084 - -1.3 179,084 - -1.0 179,084 - +2.6 179,084 - -0.8 179,086 + -2.4 179,086 + -0.8 179,086 + -2.0 179,086 + +0.4 179,086 + +0.4 179,087 - +0.8 179,087 - +0.8 179,087 - +1.7 179,087 - -0.1 179,087 - +0.3 179,087 - +0.0 179,087 - -1.0 179,087 - -0.3 179,087 - +0.7 179,087 - -0.3 179,087 - -2.1 179,087 - -0.6 179,087 - +3.2 179,087 - -1.8 179,087 - +0.6 179,150 + +1.4 179,151 - -0.5 179,151 - -1.8 179,151 - +0.3 179,163 - +0.6 179,164 + -0.4 179,164 + -0.8 179,164 + -1.0 179,164 + +1.0 179,165 - +0.1 179,207 + +0.4 179,207 + -0.1 179,207 + +0.6 179,208 - -1.2 179,208 - +0.1 179,209 + +1.0 179,209 + +0.0 179,209 + -0.1 179,209 + -1.6 179,210 - +1.1 179,210 - +1.3 179,210 - -0.2 179,210 - -0.2 179,272 + +0.4 179,273 - -0.9 179,273 - +1.6 179,274 + -0.6 179,275 - -0.6 179,314 + IAI47_00855 0.13 -0.6 179,314 + IAI47_00855 0.13 +1.4 179,314 + IAI47_00855 0.13 -0.1 179,315 - IAI47_00855 0.13 +1.4 179,315 - IAI47_00855 0.13 -1.6 179,343 - IAI47_00855 0.16 +0.5 179,355 - IAI47_00855 0.17 +0.0 179,355 - IAI47_00855 0.17 +1.4 179,355 - IAI47_00855 0.17 +0.6 179,355 - IAI47_00855 0.17 +0.4 179,510 + IAI47_00855 0.33 -0.6 179,510 + IAI47_00855 0.33 +0.7 179,510 + IAI47_00855 0.33 -0.4 179,511 - IAI47_00855 0.33 +0.0 179,511 - IAI47_00855 0.33 +0.1 179,785 + IAI47_00855 0.61 -0.5 179,785 + IAI47_00855 0.61 +2.0 179,786 - IAI47_00855 0.61 -2.9 179,786 - IAI47_00855 0.61 -1.2 179,786 - IAI47_00855 0.61 -1.4 179,888 - IAI47_00855 0.71 -0.8
Or see this region's nucleotide sequence