Strain Fitness in Pantoea sp. MT58 around IAI47_17295

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
3,662,769	+		IAI47_17280	0.48	+0.0
3,662,769	+		IAI47_17280	0.48	+0.4
3,662,769	+		IAI47_17280	0.48	-0.5
3,662,770	-		IAI47_17280	0.49	-0.2
3,662,770	-		IAI47_17280	0.49	+0.9
3,662,770	-		IAI47_17280	0.49	+1.0
3,662,770	-		IAI47_17280	0.49	+0.9
3,662,770	-		IAI47_17280	0.49	+0.9
3,662,770	-		IAI47_17280	0.49	-2.1
3,662,770	-		IAI47_17280	0.49	-0.7
3,662,772	+		IAI47_17280	0.50	-0.5
3,662,772	+		IAI47_17280	0.50	+0.5
3,662,772	+		IAI47_17280	0.50	-0.8
3,662,772	+		IAI47_17280	0.50	+0.3
3,662,773	-		IAI47_17280	0.51	+1.0
3,662,773	-		IAI47_17280	0.51	-0.2
3,662,803	+		IAI47_17280	0.73	+1.3
3,662,803	+		IAI47_17280	0.73	-0.1
3,662,803	+		IAI47_17280	0.73	-0.4
3,662,804	-		IAI47_17280	0.74	+0.6
3,662,804	-		IAI47_17280	0.74	+0.7
3,662,833	+				+1.3
3,662,838	+				+0.5
3,662,838	+				-0.4
3,662,838	+				-1.7
3,662,838	+				-1.4
3,662,839	-				-1.0
3,662,839	-				+1.7
3,662,839	-				-0.7
3,662,839	-				+0.4
3,662,839	-				+0.1
3,662,862	+				+1.5
3,662,862	+				+0.1
3,662,862	+				+0.7
3,662,862	+				+0.2
3,662,862	+				-2.3
3,662,863	-				-1.0
3,662,863	-				+0.3
3,662,863	-				-0.7
3,662,863	-				-0.6
3,662,863	-				-0.2
3,662,863	-				+0.4
3,662,867	+				-0.1
3,662,867	+				-0.5
3,662,867	+				-1.0
3,662,868	-				-0.2
3,662,868	-				-0.1
3,662,877	+				+0.1
3,662,877	+				-0.7
3,662,877	+				-0.7
3,662,936	+				+0.5
3,662,970	+		IAI47_17285	0.23	+0.2
3,662,970	+		IAI47_17285	0.23	-0.1
3,662,970	+		IAI47_17285	0.23	+1.4
3,662,970	+		IAI47_17285	0.23	+0.1
3,662,970	+		IAI47_17285	0.23	-0.4
3,662,971	-		IAI47_17285	0.23	-1.0
3,663,018	+		IAI47_17285	0.59	-0.7
3,663,052	-		IAI47_17285	0.85	-1.0
3,663,125	-				+0.1
3,663,125	-				+0.1
3,664,748	+				+0.6
3,664,748	+				-1.5
3,664,759	+				+0.8
3,664,792	+				-1.0
3,664,792	+				-0.8
3,664,792	+				+1.7
3,664,792	+				+0.7
3,664,793	-				+0.4
3,664,793	-				+0.6
3,664,793	-				+1.1
3,664,793	-				-1.3
3,664,793	-				+0.8
3,664,797	+				-0.2
3,664,797	+				-0.4
3,664,797	+				-0.1
3,664,798	-				+0.5
3,664,816	+				+0.8
3,664,816	+				+0.9
3,664,816	+				+0.2
3,664,816	+				+0.9
3,664,817	-				+0.3
3,664,817	-				-0.2
3,664,817	-				-1.0
3,664,817	-				+0.5
3,664,826	+				+1.1
3,664,826	+				+0.5
3,664,826	+				-0.6
3,664,826	+				+0.2
3,664,826	+				-0.3
3,664,826	+				-0.3
3,664,826	+				-0.3
3,664,827	-				-0.1
3,664,827	-				-0.5
3,664,827	-				+0.1
3,664,827	-				-1.3
3,664,827	-				-1.1
3,664,827	-				+0.0
3,664,827	-				-0.4
3,664,827	-				+0.9
3,664,827	-				+0.9
3,664,827	-				-0.1
3,664,827	-				+0.4
3,664,827	-				-0.3
3,664,828	+				-2.5
3,664,828	+				+0.6
3,664,828	+				-0.7
3,664,828	+				+0.7
3,664,829	-				-0.1
3,664,829	-				-1.5
3,664,829	-				-0.1
3,664,903	+		IAI47_17300	0.25	-1.4
3,664,903	+		IAI47_17300	0.25	-0.9
3,664,903	+		IAI47_17300	0.25	+0.9
3,664,903	+		IAI47_17300	0.25	-0.1
3,664,904	-		IAI47_17300	0.26	+0.9
3,664,904	-		IAI47_17300	0.26	-0.2
3,664,904	-		IAI47_17300	0.26	-1.7
3,665,018	+		IAI47_17300	0.58	-0.5
3,665,018	+		IAI47_17300	0.58	-1.3
3,665,018	+		IAI47_17300	0.58	+1.2
3,665,018	+		IAI47_17300	0.58	-1.7
3,665,019	-		IAI47_17300	0.59	+0.2
3,665,019	-		IAI47_17300	0.59	-1.2
3,665,019	-		IAI47_17300	0.59	-0.4
3,665,039	+		IAI47_17300	0.64	-0.9
3,665,039	+		IAI47_17300	0.64	+0.2
3,665,039	+		IAI47_17300	0.64	+0.3
3,665,039	+		IAI47_17300	0.64	+0.6
3,665,039	+		IAI47_17300	0.64	-0.2
3,665,039	+		IAI47_17300	0.64	-2.0
3,665,039	+		IAI47_17300	0.64	-0.5
3,665,040	-		IAI47_17300	0.65	+0.7
3,665,040	-		IAI47_17300	0.65	-0.7
3,665,040	-		IAI47_17300	0.65	+0.9
3,665,040	-		IAI47_17300	0.65	+0.3
3,665,040	-		IAI47_17300	0.65	-0.7
3,665,040	-		IAI47_17300	0.65	-1.5
3,665,040	-		IAI47_17300	0.65	+0.5
3,665,040	-		IAI47_17300	0.65	-0.9
3,665,040	-		IAI47_17300	0.65	-1.9
3,665,096	+		IAI47_17300	0.81	-0.1
3,665,097	-		IAI47_17300	0.81	+1.1
3,665,122	-		IAI47_17300	0.88	-1.4
3,665,153	+				-0.7
3,665,165	+				-0.5
3,665,165	+				-0.1
3,665,165	+				-0.1
3,665,165	+				+0.9
3,665,165	+				-0.5
3,665,166	-				-1.3
3,665,176	+				+0.3
3,665,176	+				-1.1
3,665,176	+				-1.5
3,665,176	+				+0.1
3,665,176	+				+0.2
3,665,176	+				-0.9
3,665,177	-				-1.6
3,665,177	-				+0.4
3,665,177	-				-0.7
3,665,177	-				-0.2
3,665,177	-				+0.6
3,665,177	-				+1.7
3,665,177	-				-0.7
3,665,177	-				-0.1
3,665,177	-				+0.1
3,665,177	-				+0.4
3,665,179	+				+0.3
3,665,180	-				-0.5
3,665,180	-				+0.6
3,665,203	+				-0.1
3,665,203	+				+0.9
3,665,203	+				+0.9
3,665,204	-				+0.1
3,665,204	-				+0.9
3,665,243	+				+1.5
3,665,243	+				-1.5
3,665,244	-				+0.2
3,665,244	-				+0.5
3,665,252	+				+1.5
3,665,253	-				-0.3
3,665,253	-				-0.9
3,665,253	-				-1.4
3,665,253	-				-1.3
3,665,254	+				+0.3
3,665,254	+				+0.9
3,665,254	+				-0.6
3,665,254	+				-1.3
3,665,254	+				+0.3
3,665,254	+				+1.4
3,665,254	+				+0.1
3,665,254	+				+0.2
3,665,254	+				-0.1
3,665,265	+				-0.7
3,665,265	+				-0.2
3,665,266	-				+0.9
3,665,266	-				+0.3
3,665,266	-				-0.5
3,665,272	+				-0.4
3,665,277	+				+0.1
3,665,277	+				-0.4
3,665,278	-				-1.2
3,665,278	-				-0.3
3,665,278	-				-2.7
3,665,312	+				+1.5
3,665,313	-				-0.3
3,665,320	+				-1.4
3,665,320	+				+0.5
3,665,320	+				-0.5
3,665,320	+				+1.0
3,665,320	+				+0.4
3,665,320	+				+0.1
3,665,320	+				+0.7
3,665,321	-				-0.4
3,665,321	-				-0.9
3,665,321	-				+0.5
3,665,321	-				-0.6
3,665,321	-				-1.1
3,665,321	-				+1.2
3,665,369	+				+1.9
3,665,369	+				-1.2
3,665,370	-				+0.5
3,665,400	+				+0.5
3,665,400	+				+1.5
3,665,400	+				-0.3
3,665,400	+				-0.0
3,665,400	+				+0.6
3,665,401	-				+0.5
3,665,401	-				+0.3
3,665,401	-				-0.7
3,665,401	-				+0.4
3,665,401	-				-0.1
3,665,401	-				+0.9
3,665,401	-				-0.7
3,665,401	-				+0.3
3,665,404	+				+0.2
3,665,404	+				-0.1
3,665,404	+				+0.3
3,665,404	+				-0.3
3,665,404	+				+0.5
3,665,404	+				-1.3
3,665,404	+				-0.1
3,665,404	+				-1.0
3,665,404	+				-2.1
3,665,404	+				+0.1
3,665,404	+				-0.8
3,665,404	+				-0.4
3,665,404	+				+0.0
3,665,404	+				+1.2
3,665,404	+				+0.4
3,665,404	+				-0.8
3,665,404	+				+0.2
3,665,404	+				+1.5
3,665,404	+				+0.2
3,665,404	+				-0.1
3,665,404	+				+1.1
3,665,404	+				-0.4
3,665,404	+				-0.5
3,665,404	+				+0.9
3,665,405	-				+0.9
3,665,405	-				-1.0
3,665,405	-				+0.9
3,665,405	-				+0.5
3,665,405	-				+0.3
3,665,405	-				-0.5
3,665,405	-				-0.9
3,665,405	-				+0.7
3,665,405	-				+0.9
3,665,405	-				+0.2
3,665,405	-				+0.5
3,665,405	-				-0.6
3,665,405	-				+0.3
3,665,406	+				+0.6
3,665,406	+				+0.1
3,665,406	+				+0.0
3,665,407	-				+0.3
3,665,407	-				-1.3
3,665,407	-				+0.4
3,665,409	+				-1.1
3,665,409	+				+1.3
3,665,409	+				-0.2
3,665,409	+				-0.1
3,665,410	-				-0.3
3,665,410	-				-0.5
3,665,410	-				-1.3
3,665,410	-				-0.1
3,665,410	-				+1.0
3,665,410	-				+0.1
3,665,469	+				+0.2
3,665,469	+				+0.2
3,665,469	+				+0.9
3,665,469	+				+0.9
3,665,469	+				+0.7
3,665,469	+				-1.1
3,665,469	+				+1.5
3,665,469	+				-0.7
3,665,469	+				-0.3
3,665,469	+				-0.1
3,665,469	+				+0.6
3,665,470	-				+0.7
3,665,470	-				-1.3
3,665,470	-				-0.4
3,665,470	-				-1.0
3,665,470	-				+0.9
3,665,470	-				-0.7
3,665,470	-				+0.7
3,665,470	-				+0.7
3,665,470	-				-0.4
3,665,487	+				-0.7
3,665,487	+				+0.0
3,665,487	+				+0.0
3,665,488	-				-0.1
3,665,488	-				+0.1
3,665,488	-				-0.1
3,665,488	-				+0.1
3,665,488	-				-0.5
3,665,488	-				+0.9
3,665,488	-				-1.6
3,665,488	-				+2.5