Strain Fitness in Pantoea sp. MT58 around IAI47_08100

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
1,709,895	+				-0.3
1,709,895	+				-0.2
1,709,896	-				+2.2
1,709,896	-				-0.1
1,709,896	-				-0.5
1,709,896	-				-0.5
1,709,907	-				-1.9
1,709,907	-				+1.8
1,709,907	-				-2.0
1,709,907	-				-0.8
1,709,995	+				-0.2
1,709,995	+				+0.4
1,709,995	+				-1.2
1,709,996	-				+0.8
1,709,996	-				+0.1
1,709,996	-				+1.0
1,709,996	-				+0.5
1,709,996	-				+0.9
1,709,996	-				+0.3
1,709,996	-				+0.6
1,709,996	-				+0.4
1,709,996	-				-1.2
1,710,027	-				-0.0
1,710,040	+				-2.2
1,710,041	-				+0.5
1,710,049	+				-0.1
1,710,050	-				-0.3
1,710,050	-				+1.8
1,710,055	+				-0.6
1,710,056	-				+0.6
1,710,066	+				-0.2
1,710,066	+				-0.4
1,710,066	+				-0.2
1,710,170	+		IAI47_08090	0.36	-3.0
1,710,171	-		IAI47_08090	0.36	-1.5
1,710,213	+		IAI47_08090	0.47	+0.8
1,710,234	+		IAI47_08090	0.53	+1.2
1,710,234	+		IAI47_08090	0.53	-0.3
1,710,321	+		IAI47_08090	0.75	-0.2
1,710,321	+		IAI47_08090	0.75	+0.0
1,710,322	-		IAI47_08090	0.76	-0.6
1,710,322	-		IAI47_08090	0.76	+0.8
1,710,322	-		IAI47_08090	0.76	-0.2
1,710,322	-		IAI47_08090	0.76	+0.8
1,710,376	+		IAI47_08090	0.90	-1.8
1,710,376	+		IAI47_08090	0.90	+0.7
1,710,376	+		IAI47_08090	0.90	-0.5
1,710,377	-				-0.6
1,710,416	+				-1.2
1,710,416	+				-0.0
1,710,417	-				+1.3
1,710,417	-				-1.7
1,710,417	-				-0.4
1,710,419	+				-0.4
1,710,419	+				+0.4
1,710,419	+				+0.5
1,710,419	+				+0.1
1,710,420	-				+0.0
1,710,420	-				+0.2
1,710,420	-				+1.3
1,710,420	-				+0.1
1,710,433	+				+0.5
1,710,433	+				+0.8
1,710,433	+				+0.1
1,710,434	-				+1.4
1,710,434	-				-0.3
1,710,438	+		IAI47_08095	0.11	+0.5
1,710,438	+		IAI47_08095	0.11	+0.3
1,710,438	+		IAI47_08095	0.11	-0.7
1,710,438	+		IAI47_08095	0.11	-0.9
1,710,439	-		IAI47_08095	0.11	+0.5
1,710,439	-		IAI47_08095	0.11	+0.4
1,710,439	-		IAI47_08095	0.11	-0.2
1,710,439	-		IAI47_08095	0.11	-0.2
1,710,439	-		IAI47_08095	0.11	-0.3
1,710,439	-		IAI47_08095	0.11	-0.3
1,710,439	-		IAI47_08095	0.11	-1.3
1,710,447	-		IAI47_08095	0.13	+1.5
1,710,447	-		IAI47_08095	0.13	-0.6
1,710,447	-		IAI47_08095	0.13	-1.3
1,710,453	-		IAI47_08095	0.15	+1.3
1,710,506	+		IAI47_08095	0.30	-0.7
1,710,507	-		IAI47_08095	0.31	+0.8
1,710,524	+		IAI47_08095	0.36	-0.7
1,710,528	-		IAI47_08095	0.37	-0.4
1,710,528	-		IAI47_08095	0.37	-0.3
1,710,554	+		IAI47_08095	0.44	+0.5
1,710,614	+		IAI47_08095	0.62	-0.7
1,710,615	-		IAI47_08095	0.62	-0.7
1,710,615	-		IAI47_08095	0.62	-0.6
1,710,615	-		IAI47_08095	0.62	-1.0
1,710,628	+		IAI47_08095	0.66	-1.2
1,710,628	+		IAI47_08095	0.66	-0.2
1,710,628	+		IAI47_08095	0.66	-1.7
1,710,628	+		IAI47_08095	0.66	+1.5
1,710,628	+		IAI47_08095	0.66	+0.4
1,710,628	+		IAI47_08095	0.66	-0.0
1,710,628	+		IAI47_08095	0.66	-0.2
1,710,628	+		IAI47_08095	0.66	+1.5
1,710,628	+		IAI47_08095	0.66	+0.0
1,710,628	+		IAI47_08095	0.66	+0.0
1,710,628	+		IAI47_08095	0.66	-0.4
1,710,628	+		IAI47_08095	0.66	-0.2
1,710,628	+		IAI47_08095	0.66	-0.2
1,710,629	-		IAI47_08095	0.66	-0.2
1,710,629	-		IAI47_08095	0.66	+0.3
1,710,629	-		IAI47_08095	0.66	+1.4
1,710,629	-		IAI47_08095	0.66	+0.2
1,710,629	-		IAI47_08095	0.66	-0.7
1,710,629	-		IAI47_08095	0.66	-0.4
1,710,635	+		IAI47_08095	0.68	-0.3
1,710,635	+		IAI47_08095	0.68	+1.8
1,710,635	+		IAI47_08095	0.68	+0.9
1,710,635	+		IAI47_08095	0.68	+0.7
1,710,635	+		IAI47_08095	0.68	-0.2
1,710,635	+		IAI47_08095	0.68	-0.2
1,710,635	+		IAI47_08095	0.68	+0.8
1,710,635	+		IAI47_08095	0.68	-0.2
1,710,635	+		IAI47_08095	0.68	-1.6
1,710,635	+		IAI47_08095	0.68	+0.8
1,710,636	-		IAI47_08095	0.68	+0.2
1,710,636	-		IAI47_08095	0.68	+0.5
1,710,636	-		IAI47_08095	0.68	+0.6
1,710,636	-		IAI47_08095	0.68	+0.0
1,710,636	-		IAI47_08095	0.68	+0.1
1,710,636	-		IAI47_08095	0.68	+1.4
1,710,636	-		IAI47_08095	0.68	-1.2
1,710,636	-		IAI47_08095	0.68	-1.1
1,710,649	+		IAI47_08095	0.72	+0.5
1,710,668	+		IAI47_08095	0.78	+0.0
1,710,669	-		IAI47_08095	0.78	-0.0
1,710,680	+		IAI47_08095	0.81	+2.2
1,710,680	+		IAI47_08095	0.81	+0.5
1,710,680	+		IAI47_08095	0.81	+0.5
1,710,680	+		IAI47_08095	0.81	+0.0
1,710,741	+				-1.3
1,710,741	+				-0.3
1,710,741	+				-0.7
1,710,742	-				+0.0
1,710,742	-				-0.4
1,710,742	-				+0.2
1,710,752	+				+0.5
1,710,752	+				-0.3
1,710,753	-				-0.4
1,710,753	-				-0.2
1,710,759	-				-1.1
1,710,772	+				-0.6
1,710,776	-				-0.2
1,710,858	+				-1.7
1,710,858	+				+0.1
1,710,859	-				-1.3
1,710,871	+				-0.7
1,710,872	-				-0.7
1,710,891	+				+0.1
1,710,891	+				+0.5
1,710,892	-				-2.6
1,710,931	+		IAI47_08100	0.13	+0.6
1,710,931	+		IAI47_08100	0.13	-0.4
1,710,931	+		IAI47_08100	0.13	+0.1
1,710,932	-		IAI47_08100	0.14	-1.5
1,710,932	-		IAI47_08100	0.14	-1.0
1,710,932	-		IAI47_08100	0.14	-2.0
1,710,956	+		IAI47_08100	0.23	+0.3
1,710,956	+		IAI47_08100	0.23	-0.9
1,710,984	+		IAI47_08100	0.33	-0.0
1,710,984	+		IAI47_08100	0.33	+0.3
1,710,984	+		IAI47_08100	0.33	+0.5
1,711,033	+		IAI47_08100	0.52	+0.5
1,711,033	+		IAI47_08100	0.52	-1.5
1,711,033	+		IAI47_08100	0.52	+1.1
1,711,034	-		IAI47_08100	0.52	-0.5
1,711,035	+		IAI47_08100	0.52	+0.2
1,711,036	-		IAI47_08100	0.53	+0.7
1,711,036	-		IAI47_08100	0.53	+0.8
1,711,036	-		IAI47_08100	0.53	+0.3
1,711,041	+		IAI47_08100	0.55	-0.7
1,711,041	+		IAI47_08100	0.55	+0.4
1,711,041	+		IAI47_08100	0.55	+0.6
1,711,041	+		IAI47_08100	0.55	+0.8
1,711,042	-		IAI47_08100	0.55	+0.6
1,711,042	-		IAI47_08100	0.55	+0.8
1,711,042	-		IAI47_08100	0.55	-1.5
1,711,042	-		IAI47_08100	0.55	+0.6
1,711,042	-		IAI47_08100	0.55	-0.5
1,711,042	-		IAI47_08100	0.55	-0.5
1,711,042	-		IAI47_08100	0.55	-0.3
1,711,074	+		IAI47_08100	0.67	-0.0
1,711,074	+		IAI47_08100	0.67	-0.3
1,711,074	+		IAI47_08100	0.67	+0.3
1,711,074	+		IAI47_08100	0.67	+0.4
1,711,074	+		IAI47_08100	0.67	+0.8
1,711,074	+		IAI47_08100	0.67	+0.8
1,711,075	-		IAI47_08100	0.67	+0.3
1,711,075	-		IAI47_08100	0.67	+1.2
1,711,075	-		IAI47_08100	0.67	-0.4
1,711,075	-		IAI47_08100	0.67	-0.2
1,711,077	+		IAI47_08100	0.68	-0.3
1,711,078	-		IAI47_08100	0.69	-0.5
1,711,078	-		IAI47_08100	0.69	+0.3
1,711,078	-		IAI47_08100	0.69	-1.7
1,711,078	-		IAI47_08100	0.69	+1.4
1,711,078	-		IAI47_08100	0.69	+0.5
1,711,087	-		IAI47_08100	0.72	-1.6
1,711,087	-		IAI47_08100	0.72	-1.3
1,711,137	+				-1.7
1,711,137	+				+0.2
1,711,138	-				+0.6
1,711,159	+				+0.5
1,711,159	+				-0.2
1,711,159	+				-0.6
1,711,159	+				-1.3
1,711,159	+				+0.6
1,711,159	+				-1.5
1,711,159	+				+0.4
1,711,159	+				-0.2
1,711,159	+				-1.3
1,711,159	+				-0.2
1,711,160	-				-0.8
1,711,160	-				-0.1
1,711,160	-				-1.0
1,711,160	-				-1.3
1,711,160	-				+1.6
1,711,160	-				-0.0
1,711,160	-				-1.2
1,711,160	-				+0.8
1,711,202	-				+0.1
1,711,202	-				-0.1
1,711,202	-				-0.2
1,711,289	+		IAI47_08105	0.37	+0.5
1,711,290	-		IAI47_08105	0.38	+0.4
1,711,322	+		IAI47_08105	0.51	+1.4
1,711,322	+		IAI47_08105	0.51	-0.7
1,711,323	-		IAI47_08105	0.51	+0.3
1,711,323	-		IAI47_08105	0.51	+0.8
1,711,395	+		IAI47_08105	0.81	-2.2
1,711,421	-				+0.6
1,711,475	+				+0.8
1,711,475	+				-0.5
1,711,475	+				-0.5
1,711,475	+				-0.9
1,711,476	-				-0.6
1,711,476	-				+0.4
1,711,476	-				+0.1
1,711,478	+				-1.0
1,711,479	-				+0.8
1,711,479	-				+0.6
1,711,484	-				+1.1
1,711,487	+				-0.2
1,711,497	-				-1.1
1,711,584	+				+0.8
1,711,584	+				+0.3
1,711,584	+				-0.7
1,711,584	+				+0.7
1,711,584	+				-0.5
1,711,585	-				+1.4
1,711,585	-				+0.6
1,711,585	-				+1.2
1,711,595	+				+0.1
1,711,595	+				+0.8
1,711,596	-				-2.7
1,711,596	-				+0.2
1,711,596	-				-1.2
1,711,628	+				+1.4
1,711,629	-				-0.4
1,711,629	-				-0.3
1,711,629	-				+0.5
1,711,631	+				+0.2
1,711,631	+				-0.2
1,711,631	+				-0.5
1,711,631	+				+0.5
1,711,632	-				+0.8
1,711,632	-				-0.0
1,711,632	-				+0.4
1,711,632	-				-2.1
1,711,632	-				+0.2
1,711,632	-				+0.2
1,711,632	-				+0.0
1,711,632	-				-0.0
1,711,635	+				+0.0
1,711,635	+				+0.8
1,711,635	+				+0.5
1,711,635	+				+0.1
1,711,635	+				+0.5
1,711,635	+				-0.2
1,711,635	+				+0.5
1,711,635	+				+0.3
1,711,635	+				-0.5
1,711,635	+				-0.5
1,711,636	-				-0.6
1,711,636	-				+0.8
1,711,636	-				-1.6
1,711,636	-				+0.2
1,711,636	-				-0.0
1,711,636	-				-1.5
1,711,848	+		IAI47_08110	0.78	-0.1
1,711,848	+		IAI47_08110	0.78	+1.4
1,711,848	+		IAI47_08110	0.78	-0.4
1,711,848	+		IAI47_08110	0.78	-0.2
1,711,849	-		IAI47_08110	0.78	-0.7
1,711,849	-		IAI47_08110	0.78	+0.4
1,711,873	+		IAI47_08110	0.86	-0.3
1,711,873	+		IAI47_08110	0.86	+0.3
1,711,873	+		IAI47_08110	0.86	+1.3
1,711,873	+		IAI47_08110	0.86	-1.0
1,711,873	+		IAI47_08110	0.86	+0.4
1,711,874	-		IAI47_08110	0.86	-2.3
1,711,874	-		IAI47_08110	0.86	-0.9
1,711,890	+				-0.1
1,711,890	+				+0.5
1,711,912	+				+0.6
1,711,912	+				-0.7
1,711,912	+				-0.9
1,711,912	+				-0.7
1,711,913	-				+0.4
1,711,913	-				-1.5
1,712,026	+				-0.1
1,712,027	-				-0.5
1,712,035	-				+0.1
1,712,044	+				-0.5
1,712,044	+				-0.8
1,712,044	+				-0.2
1,712,044	+				+0.5
1,712,044	+				+0.8
1,712,044	+				+0.3
1,712,045	-				+0.3
1,712,045	-				+0.8
1,712,045	-				+0.0
1,712,045	-				-0.7
1,712,045	-				+0.1
1,712,049	+				+0.8
1,712,049	+				+0.3
1,712,049	+				+0.8
1,712,049	+				+0.7
1,712,049	+				+0.8
1,712,050	-				+0.6
1,712,050	-				-0.0
1,712,058	-				-0.4
1,712,062	+				-0.6
1,712,062	+				-0.4
1,712,062	+				+0.4
1,712,062	+				+0.4
1,712,062	+				+0.5
1,712,063	-				-0.3
1,712,111	+				-0.3
1,712,111	+				-0.6
1,712,111	+				+0.2
1,712,124	+				+1.1
1,712,148	+		IAI47_08115	0.12	+0.4
1,712,148	+		IAI47_08115	0.12	+0.3
1,712,149	-		IAI47_08115	0.12	-0.3
1,712,149	-		IAI47_08115	0.12	+0.8
1,712,149	-		IAI47_08115	0.12	+1.4