Strain Fitness in Pantoea sp. MT58 around IAI47_05190

Experiment: Ying_OrganicAcid7 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_OrganicAcid7 rep C; time point 1
1,097,006	+				-0.7
1,097,007	-				-1.2
1,097,007	-				-1.1
1,097,062	-				+1.5
1,097,069	+				+0.6
1,097,069	+				+0.2
1,097,069	+				-0.2
1,097,069	+				+0.7
1,097,069	+				+1.9
1,097,070	-				+1.7
1,097,070	-				-0.9
1,097,070	-				-0.6
1,097,070	-				-0.9
1,097,070	-				+1.6
1,097,070	-				+0.0
1,097,081	+				+0.9
1,097,081	+				-1.1
1,097,132	+				-0.7
1,097,135	-				+0.5
1,097,135	-				-1.7
1,097,219	+				-1.5
1,097,219	+				+0.4
1,097,219	+				-1.7
1,097,219	+				-0.1
1,097,220	-				-0.1
1,097,220	-				+0.9
1,097,220	-				-2.1
1,097,220	-				-0.1
1,097,220	-				+0.7
1,097,246	+		IAI47_05185	0.10	+0.5
1,097,247	-		IAI47_05185	0.11	+0.6
1,097,301	+		IAI47_05185	0.19	-0.2
1,097,301	+		IAI47_05185	0.19	+0.7
1,097,301	+		IAI47_05185	0.19	+0.9
1,097,301	+		IAI47_05185	0.19	-0.3
1,097,302	-		IAI47_05185	0.19	+0.9
1,097,302	-		IAI47_05185	0.19	+1.5
1,097,302	-		IAI47_05185	0.19	+0.4
1,097,362	+		IAI47_05185	0.29	+0.1
1,097,484	+		IAI47_05185	0.48	+1.5
1,097,485	-		IAI47_05185	0.48	+0.9
1,097,485	-		IAI47_05185	0.48	-2.3
1,097,517	+		IAI47_05185	0.54	+0.8
1,097,517	+		IAI47_05185	0.54	-0.1
1,097,517	+		IAI47_05185	0.54	+0.5
1,097,517	+		IAI47_05185	0.54	+0.4
1,097,518	-		IAI47_05185	0.54	-1.9
1,097,537	+		IAI47_05185	0.57	+0.5
1,097,537	+		IAI47_05185	0.57	-0.5
1,097,537	+		IAI47_05185	0.57	+0.5
1,097,538	-		IAI47_05185	0.57	+0.6
1,097,538	-		IAI47_05185	0.57	+0.5
1,097,716	-		IAI47_05185	0.85	+0.2
1,097,716	-		IAI47_05185	0.85	+1.6
1,097,754	+				-0.4
1,097,754	+				-0.7
1,097,754	+				+2.9
1,097,755	-				+0.3
1,097,755	-				+1.4
1,097,755	-				-0.6
1,097,755	-				-0.8
1,097,755	-				+0.4
1,097,805	+				-0.7
1,097,806	-				-0.1
1,097,806	-				+0.3
1,097,939	+				-0.7
1,097,939	+				-0.3
1,097,940	-				-0.7
1,097,940	-				-1.5
1,097,940	-				+1.4
1,097,940	-				-0.3
1,097,940	-				-0.5
1,098,114	-		IAI47_05190	0.13	+0.3
1,098,114	-		IAI47_05190	0.13	-0.0
1,098,114	-		IAI47_05190	0.13	-0.1
1,098,121	+		IAI47_05190	0.14	-0.7
1,098,121	+		IAI47_05190	0.14	-0.1
1,098,121	+		IAI47_05190	0.14	-0.5
1,098,121	+		IAI47_05190	0.14	-0.3
1,098,122	-		IAI47_05190	0.14	+0.9
1,098,127	+		IAI47_05190	0.14	-0.5
1,098,128	-		IAI47_05190	0.14	+0.7
1,098,147	-		IAI47_05190	0.16	+0.0
1,098,147	-		IAI47_05190	0.16	+0.5
1,098,169	+		IAI47_05190	0.17	-0.1
1,098,186	+		IAI47_05190	0.19	-0.5
1,098,186	+		IAI47_05190	0.19	+0.1
1,098,187	-		IAI47_05190	0.19	+0.3
1,098,187	-		IAI47_05190	0.19	-0.9
1,098,187	-		IAI47_05190	0.19	-1.1
1,098,187	-		IAI47_05190	0.19	-0.1
1,098,204	-		IAI47_05190	0.20	-0.1
1,098,226	+		IAI47_05190	0.22	+1.6
1,098,226	+		IAI47_05190	0.22	-1.7
1,098,226	+		IAI47_05190	0.22	+0.5
1,098,227	-		IAI47_05190	0.22	-0.6
1,098,370	+		IAI47_05190	0.33	+0.0
1,098,413	-		IAI47_05190	0.36	-0.9
1,098,448	-		IAI47_05190	0.39	+0.5
1,098,538	+		IAI47_05190	0.46	-0.9
1,098,538	+		IAI47_05190	0.46	+0.5
1,098,599	+		IAI47_05190	0.51	+0.4
1,098,599	+		IAI47_05190	0.51	-0.1
1,098,600	-		IAI47_05190	0.51	-0.9
1,098,600	-		IAI47_05190	0.51	+0.1
1,098,684	+		IAI47_05190	0.58	-0.7
1,098,806	+		IAI47_05190	0.67	-0.7
1,098,806	+		IAI47_05190	0.67	-0.1
1,098,807	-		IAI47_05190	0.67	+0.6
1,098,807	-		IAI47_05190	0.67	+1.6
1,098,807	-		IAI47_05190	0.67	+0.4
1,098,807	-		IAI47_05190	0.67	-3.0
1,098,807	-		IAI47_05190	0.67	-0.4
1,098,845	+		IAI47_05190	0.70	-0.7
1,098,846	-		IAI47_05190	0.70	-1.9
1,098,968	+		IAI47_05190	0.80	+0.9
1,098,968	+		IAI47_05190	0.80	+0.3
1,098,968	+		IAI47_05190	0.80	+0.4
1,098,969	-		IAI47_05190	0.80	+0.2
1,098,969	-		IAI47_05190	0.80	-0.3
1,099,022	+		IAI47_05190	0.84	+0.3
1,099,022	+		IAI47_05190	0.84	+0.1
1,099,022	+		IAI47_05190	0.84	-1.5
1,099,023	-		IAI47_05190	0.84	+1.5
1,099,023	-		IAI47_05190	0.84	-0.2
1,099,094	-		IAI47_05190	0.89	+0.5
1,099,168	+				+0.5
1,099,293	+				-1.1
1,099,293	+				-0.1
1,099,293	+				-0.6
1,099,294	-				+1.1
1,099,370	-				+0.9
1,099,370	-				+0.5
1,099,468	+		IAI47_05195	0.19	+0.9
1,099,468	+		IAI47_05195	0.19	+1.7
1,099,469	-		IAI47_05195	0.20	-1.5
1,099,474	+		IAI47_05195	0.20	-0.7
1,099,698	+		IAI47_05195	0.52	-0.1
1,099,764	+		IAI47_05195	0.61	-0.1
1,099,847	+		IAI47_05195	0.73	-1.1
1,100,016	+				-1.5
1,100,036	-				+1.7
1,100,082	-		IAI47_05200	0.14	+0.3
1,100,097	+		IAI47_05200	0.18	-0.4
1,100,127	+		IAI47_05200	0.27	+0.9
1,100,128	-		IAI47_05200	0.27	+1.5
1,100,182	+		IAI47_05200	0.43	-0.1
1,100,183	-		IAI47_05200	0.44	-2.2
1,100,196	-		IAI47_05200	0.47	+0.1
1,100,196	-		IAI47_05200	0.47	-1.1
1,100,196	-		IAI47_05200	0.47	+1.2
1,100,205	+		IAI47_05200	0.50	-2.5