Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_01379

Experiment: D-Tagatose (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX20_01377 and MPMX20_01378 are separated by 22 nucleotidesMPMX20_01378 and MPMX20_01379 overlap by 4 nucleotidesMPMX20_01379 and MPMX20_01380 are separated by 105 nucleotidesMPMX20_01380 and MPMX20_01381 are separated by 304 nucleotides MPMX20_01377: MPMX20_01377 - Quinolinate synthase A, at 1,439,504 to 1,440,547 _01377 MPMX20_01378: MPMX20_01378 - Nicotinamide riboside transporter PnuC, at 1,440,570 to 1,441,289 _01378 MPMX20_01379: MPMX20_01379 - Zinc transporter ZitB, at 1,441,286 to 1,442,224 _01379 MPMX20_01380: MPMX20_01380 - hypothetical protein, at 1,442,330 to 1,442,710 _01380 MPMX20_01381: MPMX20_01381 - Phospho-2-dehydro-3-deoxyheptonate aldolase, Phe-sensitive, at 1,443,015 to 1,444,067 _01381 Position (kb) 1441 1442 1443Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1440.290 kb on - strand, within MPMX20_01377at 1440.374 kb on + strand, within MPMX20_01377at 1440.382 kb on - strand, within MPMX20_01377at 1440.404 kb on + strand, within MPMX20_01377at 1440.426 kb on + strand, within MPMX20_01377at 1440.447 kb on - strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.484 kb on + strandat 1440.492 kb on - strandat 1440.633 kb on - strandat 1440.635 kb on + strandat 1440.643 kb on - strand, within MPMX20_01378at 1440.738 kb on - strand, within MPMX20_01378at 1440.767 kb on + strand, within MPMX20_01378at 1440.775 kb on - strand, within MPMX20_01378at 1440.845 kb on - strand, within MPMX20_01378at 1440.845 kb on - strand, within MPMX20_01378at 1440.855 kb on - strand, within MPMX20_01378at 1440.938 kb on - strand, within MPMX20_01378at 1440.966 kb on + strand, within MPMX20_01378at 1440.974 kb on - strand, within MPMX20_01378at 1440.994 kb on + strand, within MPMX20_01378at 1441.216 kb on + strand, within MPMX20_01378at 1441.224 kb on - strandat 1441.355 kb on - strandat 1441.360 kb on - strandat 1441.376 kb on + strandat 1441.419 kb on + strand, within MPMX20_01379at 1441.419 kb on + strand, within MPMX20_01379at 1441.510 kb on + strand, within MPMX20_01379at 1441.533 kb on - strand, within MPMX20_01379at 1441.536 kb on + strand, within MPMX20_01379at 1441.595 kb on - strand, within MPMX20_01379at 1441.595 kb on - strand, within MPMX20_01379at 1441.600 kb on + strand, within MPMX20_01379at 1441.610 kb on + strand, within MPMX20_01379at 1441.642 kb on - strand, within MPMX20_01379at 1441.878 kb on + strand, within MPMX20_01379at 1441.878 kb on + strand, within MPMX20_01379at 1441.976 kb on - strand, within MPMX20_01379at 1442.076 kb on - strand, within MPMX20_01379at 1442.102 kb on + strand, within MPMX20_01379at 1442.142 kb on - strandat 1442.142 kb on - strandat 1442.164 kb on + strandat 1442.328 kb on + strandat 1442.485 kb on - strand, within MPMX20_01380at 1442.502 kb on + strand, within MPMX20_01380at 1442.517 kb on + strand, within MPMX20_01380at 1442.525 kb on - strand, within MPMX20_01380at 1442.748 kb on - strandat 1442.809 kb on - strandat 1443.152 kb on + strand, within MPMX20_01381at 1443.160 kb on - strand, within MPMX20_01381

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Tagatose (N)
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1,440,290 - MPMX20_01377 0.75 -0.6
1,440,374 + MPMX20_01377 0.83 +0.6
1,440,382 - MPMX20_01377 0.84 +2.0
1,440,404 + MPMX20_01377 0.86 -0.3
1,440,426 + MPMX20_01377 0.88 +1.0
1,440,447 - -0.7
1,440,484 + +0.7
1,440,484 + -3.1
1,440,484 + -0.5
1,440,484 + +1.3
1,440,492 - +0.1
1,440,633 - +0.3
1,440,635 + +0.8
1,440,643 - MPMX20_01378 0.10 -2.5
1,440,738 - MPMX20_01378 0.23 +2.8
1,440,767 + MPMX20_01378 0.27 +0.3
1,440,775 - MPMX20_01378 0.28 -1.7
1,440,845 - MPMX20_01378 0.38 -1.8
1,440,845 - MPMX20_01378 0.38 +0.2
1,440,855 - MPMX20_01378 0.40 +1.9
1,440,938 - MPMX20_01378 0.51 +0.8
1,440,966 + MPMX20_01378 0.55 -2.5
1,440,974 - MPMX20_01378 0.56 +1.3
1,440,994 + MPMX20_01378 0.59 -2.5
1,441,216 + MPMX20_01378 0.90 +1.3
1,441,224 - -1.4
1,441,355 - +2.1
1,441,360 - -0.3
1,441,376 + +0.4
1,441,419 + MPMX20_01379 0.14 -3.5
1,441,419 + MPMX20_01379 0.14 -1.5
1,441,510 + MPMX20_01379 0.24 -0.1
1,441,533 - MPMX20_01379 0.26 -1.7
1,441,536 + MPMX20_01379 0.27 +0.3
1,441,595 - MPMX20_01379 0.33 -3.0
1,441,595 - MPMX20_01379 0.33 -4.1
1,441,600 + MPMX20_01379 0.33 +0.1
1,441,610 + MPMX20_01379 0.35 +1.6
1,441,642 - MPMX20_01379 0.38 -1.3
1,441,878 + MPMX20_01379 0.63 -3.4
1,441,878 + MPMX20_01379 0.63 -1.9
1,441,976 - MPMX20_01379 0.73 -0.9
1,442,076 - MPMX20_01379 0.84 -1.8
1,442,102 + MPMX20_01379 0.87 +0.3
1,442,142 - -0.3
1,442,142 - -0.3
1,442,164 + -3.0
1,442,328 + -0.6
1,442,485 - MPMX20_01380 0.41 -1.8
1,442,502 + MPMX20_01380 0.45 -2.3
1,442,517 + MPMX20_01380 0.49 +2.9
1,442,525 - MPMX20_01380 0.51 +1.1
1,442,748 - +1.8
1,442,809 - +0.1
1,443,152 + MPMX20_01381 0.13 +1.3
1,443,160 - MPMX20_01381 0.14 +2.2

Or see this region's nucleotide sequence