Experiment: D-Tagatose (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX20_01055 and MPMX20_01056 are separated by 208 nucleotides MPMX20_01056 and MPMX20_01057 are separated by 2 nucleotides MPMX20_01057 and MPMX20_01058 overlap by 4 nucleotides MPMX20_01058 and MPMX20_01059 are separated by 100 nucleotides
MPMX20_01055: MPMX20_01055 - putative cyclic di-GMP phosphodiesterase PdeB, at 1,111,363 to 1,112,928
_01055
MPMX20_01056: MPMX20_01056 - 50S ribosomal protein L31 type B, at 1,113,137 to 1,113,397
_01056
MPMX20_01057: MPMX20_01057 - 50S ribosomal protein L36 2, at 1,113,400 to 1,113,540
_01057
MPMX20_01058: MPMX20_01058 - hypothetical protein, at 1,113,537 to 1,114,247
_01058
MPMX20_01059: MPMX20_01059 - HTH-type transcriptional regulatory protein GabR, at 1,114,348 to 1,115,808
_01059
Position (kb)
1113
1114 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1112.166 kb on + strand, within MPMX20_01055 at 1112.202 kb on - strand, within MPMX20_01055 at 1112.229 kb on + strand, within MPMX20_01055 at 1112.253 kb on + strand, within MPMX20_01055 at 1112.307 kb on + strand, within MPMX20_01055 at 1112.321 kb on + strand, within MPMX20_01055 at 1112.323 kb on - strand, within MPMX20_01055 at 1112.335 kb on - strand, within MPMX20_01055 at 1112.335 kb on - strand, within MPMX20_01055 at 1112.451 kb on + strand, within MPMX20_01055 at 1112.466 kb on + strand, within MPMX20_01055 at 1112.474 kb on - strand, within MPMX20_01055 at 1112.493 kb on - strand, within MPMX20_01055 at 1112.530 kb on + strand, within MPMX20_01055 at 1112.582 kb on - strand, within MPMX20_01055 at 1112.596 kb on + strand, within MPMX20_01055 at 1112.604 kb on - strand, within MPMX20_01055 at 1112.630 kb on - strand, within MPMX20_01055 at 1112.696 kb on - strand, within MPMX20_01055 at 1112.725 kb on + strand, within MPMX20_01055 at 1112.726 kb on - strand, within MPMX20_01055 at 1112.748 kb on + strand, within MPMX20_01055 at 1112.801 kb on - strand at 1112.896 kb on + strand at 1112.908 kb on + strand at 1113.019 kb on - strand at 1113.020 kb on - strand at 1113.046 kb on + strand at 1113.067 kb on + strand at 1113.158 kb on + strand at 1113.158 kb on + strand at 1113.158 kb on + strand at 1113.166 kb on - strand, within MPMX20_01056 at 1113.220 kb on + strand, within MPMX20_01056 at 1113.220 kb on + strand, within MPMX20_01056 at 1113.301 kb on + strand, within MPMX20_01056 at 1113.309 kb on - strand, within MPMX20_01056 at 1113.309 kb on - strand, within MPMX20_01056 at 1113.337 kb on + strand, within MPMX20_01056 at 1113.425 kb on + strand, within MPMX20_01057 at 1113.425 kb on + strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.433 kb on - strand, within MPMX20_01057 at 1113.514 kb on + strand, within MPMX20_01057 at 1113.514 kb on + strand, within MPMX20_01057 at 1113.638 kb on - strand, within MPMX20_01058 at 1113.681 kb on + strand, within MPMX20_01058 at 1113.800 kb on + strand, within MPMX20_01058 at 1113.800 kb on + strand, within MPMX20_01058 at 1113.800 kb on + strand, within MPMX20_01058 at 1113.800 kb on + strand, within MPMX20_01058 at 1113.808 kb on - strand, within MPMX20_01058 at 1113.808 kb on - strand, within MPMX20_01058 at 1113.857 kb on + strand, within MPMX20_01058 at 1113.887 kb on - strand, within MPMX20_01058 at 1113.896 kb on + strand, within MPMX20_01058 at 1113.912 kb on + strand, within MPMX20_01058 at 1113.912 kb on + strand, within MPMX20_01058 at 1113.912 kb on + strand, within MPMX20_01058 at 1114.007 kb on - strand, within MPMX20_01058 at 1114.017 kb on - strand, within MPMX20_01058 at 1114.017 kb on - strand, within MPMX20_01058 at 1114.039 kb on - strand, within MPMX20_01058 at 1114.039 kb on - strand, within MPMX20_01058 at 1114.107 kb on - strand, within MPMX20_01058 at 1114.107 kb on - strand, within MPMX20_01058 at 1114.213 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Tagatose (N) remove 1,112,166 + MPMX20_01055 0.51 -0.4 1,112,202 - MPMX20_01055 0.54 -0.4 1,112,229 + MPMX20_01055 0.55 -1.4 1,112,253 + MPMX20_01055 0.57 -2.8 1,112,307 + MPMX20_01055 0.60 -1.5 1,112,321 + MPMX20_01055 0.61 +0.9 1,112,323 - MPMX20_01055 0.61 +0.7 1,112,335 - MPMX20_01055 0.62 +1.5 1,112,335 - MPMX20_01055 0.62 -0.8 1,112,451 + MPMX20_01055 0.69 +0.0 1,112,466 + MPMX20_01055 0.70 -1.5 1,112,474 - MPMX20_01055 0.71 -0.3 1,112,493 - MPMX20_01055 0.72 +1.6 1,112,530 + MPMX20_01055 0.75 +0.1 1,112,582 - MPMX20_01055 0.78 +0.1 1,112,596 + MPMX20_01055 0.79 -1.2 1,112,604 - MPMX20_01055 0.79 -2.6 1,112,630 - MPMX20_01055 0.81 -0.3 1,112,696 - MPMX20_01055 0.85 -1.9 1,112,725 + MPMX20_01055 0.87 +0.3 1,112,726 - MPMX20_01055 0.87 -2.6 1,112,748 + MPMX20_01055 0.88 +0.9 1,112,801 - -0.6 1,112,896 + -1.2 1,112,908 + +0.5 1,113,019 - +0.2 1,113,020 - +2.1 1,113,046 + +0.2 1,113,067 + +2.5 1,113,158 + -0.5 1,113,158 + -1.9 1,113,158 + +0.4 1,113,166 - MPMX20_01056 0.11 -0.6 1,113,220 + MPMX20_01056 0.32 -1.6 1,113,220 + MPMX20_01056 0.32 +0.6 1,113,301 + MPMX20_01056 0.63 -0.8 1,113,309 - MPMX20_01056 0.66 -2.8 1,113,309 - MPMX20_01056 0.66 -2.4 1,113,337 + MPMX20_01056 0.77 -2.9 1,113,425 + MPMX20_01057 0.18 -0.8 1,113,425 + MPMX20_01057 0.18 +0.5 1,113,433 - MPMX20_01057 0.23 -0.4 1,113,433 - MPMX20_01057 0.23 -0.5 1,113,433 - MPMX20_01057 0.23 -3.4 1,113,433 - MPMX20_01057 0.23 +0.6 1,113,433 - MPMX20_01057 0.23 +0.0 1,113,514 + MPMX20_01057 0.81 -2.1 1,113,514 + MPMX20_01057 0.81 -4.5 1,113,638 - MPMX20_01058 0.14 -0.5 1,113,681 + MPMX20_01058 0.20 +0.7 1,113,800 + MPMX20_01058 0.37 -0.1 1,113,800 + MPMX20_01058 0.37 +0.9 1,113,800 + MPMX20_01058 0.37 -2.6 1,113,800 + MPMX20_01058 0.37 +1.6 1,113,808 - MPMX20_01058 0.38 -2.9 1,113,808 - MPMX20_01058 0.38 +1.0 1,113,857 + MPMX20_01058 0.45 +0.3 1,113,887 - MPMX20_01058 0.49 -1.9 1,113,896 + MPMX20_01058 0.50 +0.5 1,113,912 + MPMX20_01058 0.53 +0.8 1,113,912 + MPMX20_01058 0.53 +0.5 1,113,912 + MPMX20_01058 0.53 -0.1 1,114,007 - MPMX20_01058 0.66 -2.1 1,114,017 - MPMX20_01058 0.68 +1.7 1,114,017 - MPMX20_01058 0.68 -1.6 1,114,039 - MPMX20_01058 0.71 +0.0 1,114,039 - MPMX20_01058 0.71 -1.1 1,114,107 - MPMX20_01058 0.80 +2.4 1,114,107 - MPMX20_01058 0.80 +1.2 1,114,213 + -2.6
Or see this region's nucleotide sequence